Wall clock time and date at job start Wed Apr 1 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48495 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47003 * 299.99891 * 3 2 1 6 6 H 1.48503 * 109.47141 * 60.00032 * 3 2 1 7 7 C 1.38808 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99198 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00714 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00396 * 184.21908 * 9 7 2 11 11 C 1.53000 * 112.84405 * 294.82832 * 10 9 7 12 12 N 1.46499 * 109.47442 * 290.29657 * 11 10 9 13 13 C 1.34769 * 120.00378 * 185.06582 * 12 11 10 14 14 O 1.21599 * 119.99914 * 359.97438 * 13 12 11 15 15 C 1.47520 * 120.00204 * 179.97438 * 13 12 11 16 16 C 1.39796 * 120.06860 * 179.97438 * 15 13 12 17 17 C 1.37613 * 119.93128 * 179.97438 * 16 15 13 18 18 C 1.39225 * 120.06569 * 0.02562 * 17 16 15 19 19 N 1.39039 * 119.92802 * 179.97438 * 18 17 16 20 20 C 1.48232 * 111.00319 * 126.55782 * 19 18 17 21 21 C 1.51119 * 105.44282 * 144.85198 * 20 19 18 22 22 C 1.31119 * 109.36715 * 343.14186 * 21 20 19 23 23 C 1.48230 * 111.00265 * 240.19845 * 19 18 17 24 24 C 1.39214 * 120.13751 * 0.27082 * 18 17 16 25 25 C 1.37610 * 120.07033 * 359.45088 * 24 18 17 26 26 C 1.53786 * 113.69126 * 66.09337 * 10 9 7 27 27 C 1.53775 * 87.07549 * 89.12986 * 26 10 9 28 28 C 1.53773 * 113.61607 * 163.63368 * 10 9 7 29 29 H 0.97004 * 119.99985 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00026 * 4.21220 * 9 7 2 31 31 H 1.09008 * 109.46980 * 170.29601 * 11 10 9 32 32 H 1.09001 * 109.47379 * 50.29760 * 11 10 9 33 33 H 0.97001 * 119.99590 * 5.06368 * 12 11 10 34 34 H 1.08004 * 120.03793 * 0.02562 * 16 15 13 35 35 H 1.07994 * 119.96472 * 180.02562 * 17 16 15 36 36 H 1.08998 * 110.26827 * 263.87343 * 20 19 18 37 37 H 1.09004 * 110.26058 * 25.83520 * 20 19 18 38 38 H 1.07998 * 125.26720 * 163.07428 * 21 20 19 39 39 H 1.07997 * 125.24551 * 179.97438 * 22 21 20 40 40 H 1.09001 * 110.26253 * 334.06877 * 23 19 18 41 41 H 1.08993 * 110.26897 * 96.03239 * 23 19 18 42 42 H 1.08001 * 119.96261 * 179.70413 * 24 18 17 43 43 H 1.08005 * 120.03643 * 180.29737 * 25 24 18 44 44 H 1.08997 * 113.61082 * 203.67880 * 26 10 9 45 45 H 1.08997 * 113.61052 * 334.58022 * 26 10 9 46 46 H 1.09004 * 113.61615 * 270.87824 * 27 26 10 47 47 H 1.09001 * 113.61223 * 139.98167 * 27 26 10 48 48 H 1.08999 * 113.61654 * 25.34319 * 28 10 9 49 49 H 1.09004 * 113.61763 * 156.25223 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0550 -3.6551 0.0944 11 6 2.9448 -3.9197 -1.1217 12 7 2.1055 -4.1983 -2.2897 13 6 2.6735 -4.5620 -3.4565 14 8 3.8827 -4.6585 -3.5399 15 6 1.8282 -4.8430 -4.6324 16 6 2.4159 -5.2198 -5.8435 17 6 1.6247 -5.4818 -6.9385 18 6 0.2403 -5.3713 -6.8412 19 7 -0.5564 -5.6362 -7.9495 20 6 -1.5987 -6.6396 -7.6270 21 6 -2.8131 -6.2300 -8.4278 22 6 -2.6732 -4.9884 -8.8254 23 6 -1.3539 -4.4452 -8.3273 24 6 -0.3476 -4.9903 -5.6382 25 6 0.4378 -4.7325 -4.5380 26 6 2.7737 -3.8561 1.4391 27 6 1.4752 -4.5050 1.9464 28 6 1.1671 -4.8500 0.4798 29 1 -0.4850 0.8401 -0.0004 30 1 0.3575 -2.3893 -0.0615 31 1 3.5866 -4.7781 -0.9225 32 1 3.5616 -3.0428 -1.3184 33 1 1.1408 -4.1209 -2.2232 34 1 3.4898 -5.3061 -5.9195 35 1 2.0782 -5.7734 -7.8743 36 1 -1.2690 -7.6352 -7.9236 37 1 -1.8251 -6.6194 -6.5609 38 1 -3.6624 -6.8624 -8.6400 39 1 -3.3908 -4.4385 -9.4161 40 1 -1.5125 -3.8060 -7.4587 41 1 -0.8503 -3.8889 -9.1178 42 1 -1.4216 -4.9008 -5.5671 43 1 -0.0191 -4.4416 -3.6037 44 1 3.6151 -4.5470 1.3854 45 1 3.0223 -2.9232 1.9450 46 1 0.7741 -3.7945 2.3844 47 1 1.6409 -5.3798 2.5752 48 1 0.1188 -4.7195 0.2115 49 1 1.5693 -5.8127 0.1640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733721750.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:36 Heat of formation + Delta-G solvation = 69.717310 kcal Electronic energy + Delta-G solvation = -29160.181103 eV Core-core repulsion = 25282.125022 eV Total energy + Delta-G solvation = -3878.056080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88526 -39.72096 -38.68802 -37.49428 -34.07092 -33.31010 -33.09706 -31.17776 -30.10681 -29.23913 -28.76502 -27.04074 -25.30892 -24.24195 -23.65224 -22.84935 -21.98773 -21.24697 -19.99799 -19.75270 -18.51049 -17.92326 -17.25498 -17.07038 -16.36726 -15.55087 -15.23160 -14.95780 -14.79398 -14.67652 -14.43357 -14.10589 -14.04647 -13.82742 -13.44902 -13.31594 -13.19161 -13.13398 -12.75200 -12.64296 -12.27814 -12.19238 -11.91441 -11.76340 -11.64311 -11.38875 -11.25426 -11.05667 -10.87256 -10.39063 -10.21219 -10.15080 -10.01257 -9.73397 -9.68048 -9.49511 -9.14682 -8.92939 -8.87821 -8.71405 -8.49430 -7.08138 -5.85834 -3.15447 0.68514 1.24520 1.77648 2.93136 3.39101 3.46476 3.47578 3.49714 3.55930 3.84973 4.30563 4.46615 4.51259 4.67198 4.73803 4.91917 5.03685 5.13081 5.15637 5.15677 5.19711 5.22894 5.24193 5.28822 5.40156 5.40752 5.44785 5.51960 5.60676 5.73092 5.83911 5.97028 5.97180 6.05850 6.06435 6.11179 6.17772 6.20023 6.30350 6.30929 6.37884 6.44511 6.49952 6.55493 6.70558 6.86278 6.94624 7.03640 7.06722 7.67623 7.90087 8.32513 8.53972 9.44259 9.97350 10.32466 11.36245 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.002728 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.164632 B =10261.539149 C =11131.769838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.173 3.827 11 C 0.119 3.881 12 N -0.699 5.699 13 C 0.551 3.449 14 O -0.549 6.549 15 C -0.127 4.127 16 C -0.055 4.055 17 C -0.102 4.102 18 C 0.093 3.907 19 N -0.471 5.471 20 C 0.053 3.947 21 C -0.170 4.170 22 C -0.166 4.166 23 C 0.053 3.947 24 C -0.158 4.158 25 C -0.072 4.072 26 C -0.150 4.150 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -14.683 -13.023 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.090 0.910 9 N -0.341 5.341 10 C 0.080 3.920 11 C -0.007 4.007 12 N -0.349 5.349 13 C 0.337 3.663 14 O -0.429 6.429 15 C -0.130 4.130 16 C -0.075 4.075 17 C -0.120 4.120 18 C -0.001 4.001 19 N -0.192 5.192 20 C -0.073 4.073 21 C -0.188 4.188 22 C -0.184 4.184 23 C -0.073 4.073 24 C -0.178 4.178 25 C -0.091 4.091 26 C -0.190 4.190 27 C -0.166 4.166 28 C -0.182 4.182 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.597 -14.748 -13.460 20.289 hybrid contribution -0.998 1.430 0.669 1.867 sum -4.594 -13.319 -12.792 19.030 Atomic orbital electron populations 1.69660 1.05064 1.25634 1.57546 1.24715 0.95481 0.97644 1.02685 0.86157 0.78999 0.84154 0.77151 1.20450 1.21893 1.21865 1.19151 0.91128 0.83594 1.42675 0.91025 1.42085 1.05669 0.98922 1.87412 1.20815 0.92465 0.87582 0.91178 1.21925 0.93593 1.00071 0.85142 1.45740 1.11065 1.67612 1.10442 1.18151 0.87616 0.77547 0.82961 1.90748 1.14217 1.53544 1.84406 1.20147 0.93526 1.04217 0.95083 1.21240 1.00869 0.94571 0.90772 1.20923 0.91634 1.00481 0.98994 1.19133 0.93457 0.98305 0.89237 1.63104 1.17623 1.07749 1.30764 1.22244 0.88902 0.97262 0.98915 1.23610 0.98789 0.97228 0.99168 1.23626 0.97776 0.96655 1.00361 1.22241 0.91328 0.92714 1.00974 1.21532 1.00271 1.02361 0.93609 1.21244 0.92596 0.96513 0.98760 1.23300 0.96128 1.00842 0.98719 1.22631 0.98726 0.99683 0.95522 1.23138 0.99895 0.97833 0.97369 0.93552 0.77938 0.92273 0.91261 0.76496 0.84222 0.84717 0.89190 0.91497 0.84405 0.84404 0.91437 0.89072 0.85626 0.85197 0.91332 0.90586 0.89973 0.92740 0.91761 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.71 13.06 55.49 0.72 -25.98 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.10 9.08 -15.06 -0.14 -6.24 16 8 H 0.07 1.87 7.59 -52.48 -0.40 1.47 16 9 N -0.70 -15.85 5.19 -46.48 -0.24 -16.09 16 10 C 0.17 3.14 0.82 -131.01 -0.11 3.03 16 11 C 0.12 2.16 5.13 -4.04 -0.02 2.14 16 12 N -0.70 -11.76 5.33 -61.35 -0.33 -12.08 16 13 C 0.55 9.54 7.76 -12.48 -0.10 9.44 16 14 O -0.55 -11.15 16.33 5.28 0.09 -11.06 16 15 C -0.13 -1.82 5.88 -104.95 -0.62 -2.44 16 16 C -0.06 -0.72 9.58 -39.23 -0.38 -1.09 16 17 C -0.10 -1.16 9.95 -39.44 -0.39 -1.55 16 18 C 0.09 1.04 4.90 -83.86 -0.41 0.63 16 19 N -0.47 -4.76 5.56 -171.16 -0.95 -5.72 16 20 C 0.05 0.45 6.42 -4.04 -0.03 0.42 16 21 C -0.17 -1.23 10.96 -35.85 -0.39 -1.63 16 22 C -0.17 -1.24 10.95 -35.85 -0.39 -1.64 16 23 C 0.05 0.48 6.46 -4.04 -0.03 0.45 16 24 C -0.16 -1.77 7.64 -39.45 -0.30 -2.07 16 25 C -0.07 -0.90 9.53 -39.23 -0.37 -1.27 16 26 C -0.15 -2.55 7.28 -25.92 -0.19 -2.74 16 27 C -0.13 -1.99 7.99 -25.92 -0.21 -2.20 16 28 C -0.14 -2.19 7.02 -25.92 -0.18 -2.37 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.39 9.30 7.86 -40.82 -0.32 8.98 16 31 H 0.06 1.02 7.97 -51.92 -0.41 0.61 16 32 H 0.07 1.46 7.57 -51.93 -0.39 1.07 16 33 H 0.40 6.21 6.34 -40.82 -0.26 5.95 16 34 H 0.14 1.79 7.64 -52.48 -0.40 1.39 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.57 6.30 -51.93 -0.33 0.24 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.07 0.64 6.72 -51.93 -0.35 0.29 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.13 1.23 7.01 -52.49 -0.37 0.86 16 43 H 0.13 1.52 6.39 -52.48 -0.34 1.18 16 44 H 0.07 1.03 7.98 -51.93 -0.41 0.62 16 45 H 0.08 1.46 7.87 -51.93 -0.41 1.06 16 46 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 49 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -30.61 397.68 -11.41 -42.02 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -7.32 Total: 15.38 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.34 Total: -9.46 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.80 Total: -59.88 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.61 -11.41 -42.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733721750.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.738 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds