Wall clock time and date at job start Wed Apr 1 2020 00:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00103 * 2 1 4 4 H 1.48497 * 109.46771 * 269.99729 * 3 2 1 5 5 H 1.48495 * 109.47284 * 30.00016 * 3 2 1 6 6 H 1.48495 * 109.47169 * 150.00168 * 3 2 1 7 7 C 1.38816 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99864 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00121 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47241 * 324.99820 * 10 9 7 12 12 C 1.53000 * 109.47100 * 205.00204 * 10 9 7 13 13 N 1.46499 * 109.47550 * 54.99999 * 12 10 9 14 14 C 1.34769 * 120.00040 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00384 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99926 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.34239 * 126.50397 * 265.00379 * 18 17 16 20 20 N 1.36834 * 109.92851 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.05933 * 180.02562 * 20 19 18 22 22 C 1.37684 * 109.87550 * 359.97438 * 20 19 18 23 23 C 1.39123 * 133.50709 * 179.97438 * 22 20 19 24 24 C 1.37755 * 119.77684 * 180.02562 * 23 22 20 25 25 C 1.38833 * 120.66853 * 359.97438 * 24 23 22 26 26 C 1.36628 * 120.52451 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.76540 * 359.97438 * 26 25 24 28 28 C 1.52997 * 109.46936 * 85.00102 * 10 9 7 29 29 C 1.52995 * 117.50012 * 8.74671 * 28 10 9 30 30 C 1.53004 * 117.50016 * 300.08408 * 28 10 9 31 31 H 0.97003 * 119.99443 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00486 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47210 * 294.99302 * 12 10 9 34 34 H 1.09008 * 109.46831 * 175.00239 * 12 10 9 35 35 H 0.96998 * 119.99478 * 359.97438 * 13 12 10 36 36 H 1.08997 * 109.47684 * 59.99834 * 16 14 13 37 37 H 1.09008 * 109.47192 * 299.99804 * 16 14 13 38 38 H 1.09004 * 109.47397 * 59.99907 * 17 16 14 39 39 H 1.08998 * 109.47265 * 299.99811 * 17 16 14 40 40 H 1.07992 * 125.03293 * 359.97360 * 19 18 17 41 41 H 1.07996 * 120.11326 * 0.31780 * 23 22 20 42 42 H 1.08001 * 119.66142 * 179.97438 * 24 23 22 43 43 H 1.07992 * 119.73662 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.11150 * 179.97438 * 26 25 24 45 45 H 1.09003 * 115.54981 * 154.41842 * 28 10 9 46 46 H 1.08994 * 117.49804 * 0.02562 * 29 28 10 47 47 H 1.09004 * 117.49887 * 145.01931 * 29 28 10 48 48 H 1.08997 * 117.50002 * 214.98184 * 30 28 10 49 49 H 1.09001 * 117.49251 * 0.02562 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5507 -0.5889 12 6 1.1808 -4.7521 -0.6091 13 7 0.7342 -4.3355 -1.9407 14 6 -0.0556 -5.1472 -2.6712 15 8 -0.3963 -6.2228 -2.2264 16 6 -0.5145 -4.7189 -4.0412 17 6 -1.3919 -5.8141 -4.6508 18 6 -1.8513 -5.3855 -6.0206 19 6 -3.0129 -4.7834 -6.3212 20 7 -3.0808 -4.5466 -7.6671 21 1 -3.8248 -4.1209 -8.1211 22 6 -1.9354 -5.0016 -8.2809 23 6 -1.4955 -5.0122 -9.6007 24 6 -0.2668 -5.5540 -9.9080 25 6 0.5395 -6.0902 -8.9131 26 6 0.1276 -6.0891 -7.6103 27 6 -1.1137 -5.5442 -7.2763 28 6 2.4218 -4.0356 1.4375 29 6 1.8133 -3.1986 2.5644 30 6 3.2994 -3.0603 2.2247 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3881 0.0005 33 1 0.3132 -4.9201 0.0291 34 1 1.7557 -5.6747 -0.6908 35 1 1.0064 -3.4751 -2.2963 36 1 0.3531 -4.5518 -4.6793 37 1 -1.0889 -3.7960 -3.9599 38 1 -2.2597 -5.9817 -4.0129 39 1 -0.8173 -6.7368 -4.7322 40 1 -3.7803 -4.5251 -5.6066 41 1 -2.1132 -4.5929 -10.3811 42 1 0.0727 -5.5616 -10.9332 43 1 1.4999 -6.5114 -9.1709 44 1 0.7601 -6.5084 -6.8418 45 1 2.5631 -5.1007 1.6216 46 1 1.1534 -2.3784 2.2820 47 1 1.5544 -3.7129 3.4900 48 1 4.0177 -3.4837 2.9268 49 1 3.6172 -2.1486 1.7188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752495220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:06 Heat of formation + Delta-G solvation = 47.811813 kcal Electronic energy + Delta-G solvation = -28481.310787 eV Core-core repulsion = 24602.304813 eV Total energy + Delta-G solvation = -3879.005974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39139 -39.32543 -37.61115 -37.05079 -34.52227 -34.02147 -33.22548 -31.28237 -30.72014 -29.47298 -28.86393 -27.84841 -24.65455 -23.46439 -22.96984 -22.28144 -21.89665 -21.46533 -19.98999 -19.37896 -18.96838 -17.93286 -17.34910 -16.57360 -16.45780 -15.61137 -15.57241 -15.39819 -14.93502 -14.64259 -14.53497 -14.26519 -13.99142 -13.78630 -13.73354 -13.22111 -13.12747 -12.86802 -12.54429 -12.29462 -12.06738 -11.93548 -11.75401 -11.72940 -11.25219 -11.15374 -11.04896 -10.89690 -10.84419 -10.70090 -10.51712 -10.12983 -9.76770 -9.69091 -9.55225 -9.36560 -9.14038 -8.98451 -8.54023 -8.35080 -7.75565 -7.07385 -5.84866 -3.14611 0.99814 1.50151 2.54200 2.98118 3.06220 3.37722 3.44406 3.45365 3.68742 3.81682 4.49338 4.58518 4.64162 4.68139 4.85642 4.96897 5.09600 5.15752 5.26315 5.36137 5.39102 5.41761 5.47502 5.52721 5.60297 5.67495 5.74551 5.79179 5.84417 5.86377 5.86749 6.00815 6.08003 6.12338 6.16941 6.24951 6.37960 6.39219 6.49027 6.49543 6.60040 6.66567 6.68900 6.78204 6.95661 7.03377 7.04210 7.28155 7.37582 7.64734 8.03126 8.32497 8.67513 9.44889 9.99047 10.35390 11.36620 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.002349 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.272829 B =11917.895521 C =13024.712841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.191 3.809 11 H 0.056 0.944 12 C 0.119 3.881 13 N -0.714 5.714 14 C 0.510 3.490 15 O -0.558 6.558 16 C -0.134 4.134 17 C -0.026 4.026 18 C -0.164 4.164 19 C 0.052 3.948 20 N -0.597 5.597 21 H 0.414 0.586 22 C 0.094 3.906 23 C -0.133 4.133 24 C -0.101 4.101 25 C -0.150 4.150 26 C -0.067 4.067 27 C -0.101 4.101 28 C -0.177 4.177 29 C -0.163 4.163 30 C -0.176 4.176 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.410 0.590 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.171 0.829 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.118 0.882 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -10.857 -15.665 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.005 4.005 13 N -0.365 5.365 14 C 0.296 3.704 15 O -0.438 6.438 16 C -0.175 4.175 17 C -0.064 4.064 18 C -0.171 4.171 19 C -0.074 4.074 20 N -0.199 5.199 21 H 0.251 0.749 22 C -0.013 4.013 23 C -0.154 4.154 24 C -0.120 4.120 25 C -0.169 4.169 26 C -0.086 4.086 27 C -0.106 4.106 28 C -0.199 4.199 29 C -0.200 4.200 30 C -0.213 4.213 31 H 0.065 0.935 32 H 0.221 0.779 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.188 0.812 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.104 0.896 46 H 0.136 0.864 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.403 -11.396 -15.369 19.433 hybrid contribution -0.060 1.730 -0.224 1.746 sum -3.463 -9.666 -15.593 18.670 Atomic orbital electron populations 1.69663 1.05011 1.25683 1.57278 1.24706 0.95419 0.97530 1.02843 0.86267 0.78759 0.84144 0.77471 1.21796 1.21900 1.20781 1.19163 0.90892 0.83823 1.43041 0.91096 1.42467 1.05836 0.99478 1.88079 1.19996 0.94121 0.86116 0.91689 0.92569 1.21544 0.98647 0.97249 0.83093 1.46022 1.50736 1.21918 1.17862 1.20661 0.78159 0.84400 0.87176 1.90652 1.57268 1.22946 1.72909 1.21644 1.01508 1.00776 0.93530 1.19604 0.99545 0.97362 0.89921 1.20326 0.95125 1.07573 0.94071 1.21695 0.99712 1.01992 0.83967 1.41726 1.17315 1.53934 1.06968 0.74898 1.18274 0.88134 1.00858 0.94030 1.20001 0.97815 1.05050 0.92542 1.20787 0.93552 0.98481 0.99216 1.20629 1.00404 1.03087 0.92807 1.20330 0.94187 0.97679 0.96390 1.19131 0.95402 1.03486 0.92541 1.23073 1.05915 0.95315 0.95593 1.22908 0.96693 1.03531 0.96879 1.22856 0.93479 1.01917 1.03068 0.93499 0.77934 0.91837 0.92021 0.75382 0.89174 0.88823 0.90521 0.90601 0.81179 0.86512 0.85980 0.86139 0.85998 0.89647 0.86365 0.91316 0.91041 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.06 13.06 55.49 0.72 -25.33 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -5.89 8.15 -15.06 -0.12 -6.01 16 8 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16 9 N -0.72 -15.78 3.08 -53.43 -0.16 -15.95 16 10 C 0.19 3.50 2.86 -67.93 -0.19 3.31 16 11 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 12 C 0.12 2.02 5.21 -4.04 -0.02 2.00 16 13 N -0.71 -11.64 5.39 -60.29 -0.32 -11.97 16 14 C 0.51 8.17 7.83 -10.99 -0.09 8.08 16 15 O -0.56 -10.57 15.98 5.56 0.09 -10.48 16 16 C -0.13 -1.72 5.68 -27.88 -0.16 -1.88 16 17 C -0.03 -0.32 5.03 -27.88 -0.14 -0.46 16 18 C -0.16 -1.90 5.57 -102.71 -0.57 -2.47 16 19 C 0.05 0.50 11.73 -16.73 -0.20 0.31 16 20 N -0.60 -5.33 6.07 -10.65 -0.06 -5.39 16 21 H 0.41 2.40 8.96 -40.82 -0.37 2.03 16 22 C 0.09 1.03 7.28 -83.99 -0.61 0.42 16 23 C -0.13 -1.26 10.08 -39.43 -0.40 -1.66 16 24 C -0.10 -0.92 10.01 -39.54 -0.40 -1.31 16 25 C -0.15 -1.46 9.97 -39.94 -0.40 -1.86 16 26 C -0.07 -0.75 10.05 -39.65 -0.40 -1.15 16 27 C -0.10 -1.22 6.35 -105.14 -0.67 -1.89 16 28 C -0.18 -3.09 5.70 -90.62 -0.52 -3.61 16 29 C -0.16 -3.06 9.74 -26.69 -0.26 -3.32 16 30 C -0.18 -3.15 9.87 -26.69 -0.26 -3.42 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 9.37 7.80 -40.82 -0.32 9.05 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.41 6.76 8.14 -40.82 -0.33 6.43 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 38 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 46 H 0.12 2.65 6.68 -51.93 -0.35 2.30 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -30.33 405.64 -11.67 -41.99 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -7.52 Total: 20.02 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -5.50 Total: -15.23 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.17 Total: -58.64 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.33 -11.67 -41.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752495220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.804 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds