Wall clock time and date at job start Wed Apr 1 2020 00:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00103 * 2 1 4 4 H 1.48497 * 109.46771 * 269.99729 * 3 2 1 5 5 H 1.48495 * 109.47284 * 30.00016 * 3 2 1 6 6 H 1.48495 * 109.47169 * 150.00168 * 3 2 1 7 7 C 1.38816 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99864 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00121 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47241 * 324.99820 * 10 9 7 12 12 C 1.53000 * 109.47100 * 205.00204 * 10 9 7 13 13 N 1.46499 * 109.47550 * 54.99999 * 12 10 9 14 14 C 1.34769 * 120.00040 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00384 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99926 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.34239 * 126.50397 * 265.00379 * 18 17 16 20 20 N 1.36834 * 109.92851 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.05933 * 180.02562 * 20 19 18 22 22 C 1.37684 * 109.87550 * 359.97438 * 20 19 18 23 23 C 1.39123 * 133.50709 * 179.97438 * 22 20 19 24 24 C 1.37755 * 119.77684 * 180.02562 * 23 22 20 25 25 C 1.38833 * 120.66853 * 359.97438 * 24 23 22 26 26 C 1.36628 * 120.52451 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.76540 * 359.97438 * 26 25 24 28 28 C 1.52997 * 109.46936 * 85.00102 * 10 9 7 29 29 C 1.52995 * 117.50012 * 8.74671 * 28 10 9 30 30 C 1.53004 * 117.50016 * 300.08408 * 28 10 9 31 31 H 0.97003 * 119.99443 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00486 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47210 * 294.99302 * 12 10 9 34 34 H 1.09008 * 109.46831 * 175.00239 * 12 10 9 35 35 H 0.96998 * 119.99478 * 359.97438 * 13 12 10 36 36 H 1.08997 * 109.47684 * 59.99834 * 16 14 13 37 37 H 1.09008 * 109.47192 * 299.99804 * 16 14 13 38 38 H 1.09004 * 109.47397 * 59.99907 * 17 16 14 39 39 H 1.08998 * 109.47265 * 299.99811 * 17 16 14 40 40 H 1.07992 * 125.03293 * 359.97360 * 19 18 17 41 41 H 1.07996 * 120.11326 * 0.31780 * 23 22 20 42 42 H 1.08001 * 119.66142 * 179.97438 * 24 23 22 43 43 H 1.07992 * 119.73662 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.11150 * 179.97438 * 26 25 24 45 45 H 1.09003 * 115.54981 * 154.41842 * 28 10 9 46 46 H 1.08994 * 117.49804 * 0.02562 * 29 28 10 47 47 H 1.09004 * 117.49887 * 145.01931 * 29 28 10 48 48 H 1.08997 * 117.50002 * 214.98184 * 30 28 10 49 49 H 1.09001 * 117.49251 * 0.02562 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5507 -0.5889 12 6 1.1808 -4.7521 -0.6091 13 7 0.7342 -4.3355 -1.9407 14 6 -0.0556 -5.1472 -2.6712 15 8 -0.3963 -6.2228 -2.2264 16 6 -0.5145 -4.7189 -4.0412 17 6 -1.3919 -5.8141 -4.6508 18 6 -1.8513 -5.3855 -6.0206 19 6 -3.0129 -4.7834 -6.3212 20 7 -3.0808 -4.5466 -7.6671 21 1 -3.8248 -4.1209 -8.1211 22 6 -1.9354 -5.0016 -8.2809 23 6 -1.4955 -5.0122 -9.6007 24 6 -0.2668 -5.5540 -9.9080 25 6 0.5395 -6.0902 -8.9131 26 6 0.1276 -6.0891 -7.6103 27 6 -1.1137 -5.5442 -7.2763 28 6 2.4218 -4.0356 1.4375 29 6 1.8133 -3.1986 2.5644 30 6 3.2994 -3.0603 2.2247 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3881 0.0005 33 1 0.3132 -4.9201 0.0291 34 1 1.7557 -5.6747 -0.6908 35 1 1.0064 -3.4751 -2.2963 36 1 0.3531 -4.5518 -4.6793 37 1 -1.0889 -3.7960 -3.9599 38 1 -2.2597 -5.9817 -4.0129 39 1 -0.8173 -6.7368 -4.7322 40 1 -3.7803 -4.5251 -5.6066 41 1 -2.1132 -4.5929 -10.3811 42 1 0.0727 -5.5616 -10.9332 43 1 1.4999 -6.5114 -9.1709 44 1 0.7601 -6.5084 -6.8418 45 1 2.5631 -5.1007 1.6216 46 1 1.1534 -2.3784 2.2820 47 1 1.5544 -3.7129 3.4900 48 1 4.0177 -3.4837 2.9268 49 1 3.6172 -2.1486 1.7188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752495220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:05 Heat of formation + Delta-G solvation = 31.491149 kcal Electronic energy + Delta-G solvation = -28482.018504 eV Core-core repulsion = 24602.304813 eV Total energy + Delta-G solvation = -3879.713691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.14063 -40.67411 -39.12768 -37.77402 -35.89348 -35.08479 -34.97895 -32.65306 -31.91552 -30.28079 -30.02191 -29.09792 -25.96427 -25.15190 -23.73548 -23.62131 -22.92093 -22.63091 -21.34087 -20.46439 -20.19146 -19.20476 -18.69943 -17.82088 -17.29135 -16.98532 -16.76934 -16.40353 -16.31656 -16.17931 -15.53165 -15.46254 -15.19659 -14.98714 -14.72611 -14.57851 -14.41302 -14.23878 -13.65475 -13.31856 -13.26330 -12.98697 -12.87590 -12.84807 -12.63477 -12.56263 -12.52602 -12.50175 -12.11061 -11.94136 -11.91624 -11.57975 -11.56922 -11.02982 -10.99199 -10.75053 -10.60040 -10.42959 -9.92634 -9.10541 -8.97145 -8.51951 -7.86920 -5.13965 0.25204 0.74459 1.49743 1.51845 1.57814 1.73918 1.75939 2.29436 2.44138 2.59856 3.03060 3.15274 3.48025 3.82852 3.87280 3.91065 3.96873 4.03281 4.18417 4.24873 4.28180 4.33336 4.35613 4.41912 4.51016 4.53923 4.57950 4.62021 4.69682 4.76451 4.78541 4.93804 4.97690 4.97822 5.01315 5.11064 5.20416 5.24791 5.29066 5.34237 5.44670 5.62293 5.63281 5.68134 5.69848 5.74700 5.84176 5.88922 6.29282 6.33374 6.69061 6.75906 7.35211 7.41961 8.12807 8.38600 9.35433 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.002349 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.272829 B =11917.895521 C =13024.712841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.956 3.044 4 H -0.291 1.291 5 H -0.305 1.305 6 H -0.274 1.274 7 C -0.216 4.216 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.192 3.808 11 H 0.059 0.941 12 C 0.128 3.872 13 N -0.714 5.714 14 C 0.509 3.491 15 O -0.588 6.588 16 C -0.123 4.123 17 C -0.014 4.014 18 C -0.193 4.193 19 C 0.062 3.938 20 N -0.587 5.587 21 H 0.429 0.571 22 C 0.076 3.924 23 C -0.136 4.136 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.091 4.091 27 C -0.127 4.127 28 C -0.169 4.169 29 C -0.173 4.173 30 C -0.171 4.171 31 H 0.247 0.753 32 H 0.374 0.626 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.196 0.804 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -11.434 -16.800 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.259 4.259 3 Si 0.787 3.213 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.199 1.199 7 C -0.348 4.348 8 H 0.093 0.907 9 N -0.359 5.359 10 C 0.083 3.917 11 H 0.077 0.923 12 C 0.003 3.997 13 N -0.365 5.365 14 C 0.297 3.703 15 O -0.469 6.469 16 C -0.163 4.163 17 C -0.053 4.053 18 C -0.200 4.200 19 C -0.065 4.065 20 N -0.191 5.191 21 H 0.269 0.731 22 C -0.032 4.032 23 C -0.157 4.157 24 C -0.126 4.126 25 C -0.172 4.172 26 C -0.110 4.110 27 C -0.132 4.132 28 C -0.190 4.190 29 C -0.210 4.210 30 C -0.208 4.208 31 H 0.056 0.944 32 H 0.207 0.793 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.246 0.754 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.213 0.787 41 H 0.158 0.842 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.119 0.881 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.584 -11.989 -16.524 20.578 hybrid contribution -0.267 1.824 0.106 1.847 sum -2.851 -10.165 -16.417 19.519 Atomic orbital electron populations 1.69798 1.06230 1.25471 1.59953 1.25290 0.96000 1.00132 1.04471 0.85397 0.77788 0.80996 0.77117 1.21805 1.23217 1.19908 1.19399 0.91043 0.84581 1.39786 0.90719 1.42510 1.05275 1.00225 1.87901 1.20124 0.93971 0.84906 0.92671 0.92275 1.21420 0.97930 0.97188 0.83125 1.46046 1.50831 1.21918 1.17686 1.21177 0.77347 0.83748 0.87981 1.90635 1.58289 1.24216 1.73773 1.21613 1.02024 1.01121 0.91582 1.19423 0.98904 0.96496 0.90475 1.20299 0.96376 1.09738 0.93591 1.22080 0.99457 1.00339 0.84649 1.41739 1.17315 1.53315 1.06703 0.73118 1.18553 0.88678 1.01393 0.94555 1.20359 0.98239 1.04540 0.92558 1.21164 0.93313 0.97730 1.00370 1.20934 1.01249 1.02588 0.92456 1.20497 0.94460 0.98797 0.97254 1.19417 0.96167 1.04357 0.93210 1.23066 1.04996 0.96728 0.94182 1.22770 0.96734 1.03090 0.98433 1.22847 0.93392 1.01183 1.03366 0.94445 0.79324 0.93229 0.90505 0.75411 0.88194 0.88238 0.91016 0.91902 0.78743 0.84157 0.83329 0.84375 0.86156 0.86758 0.90415 0.89138 0.88075 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.29 13.06 21.65 0.28 -55.01 16 2 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.96 44.10 29.55 68.60 2.03 46.12 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.22 -10.67 8.15 84.04 0.69 -9.99 16 8 H 0.07 3.61 6.91 -2.91 -0.02 3.59 16 9 N -0.72 -31.73 3.08 -322.95 -0.99 -32.72 16 10 C 0.19 6.83 2.86 44.99 0.13 6.96 16 11 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 12 C 0.13 4.22 5.21 86.38 0.45 4.67 16 13 N -0.71 -23.06 5.39 -463.07 -2.49 -25.56 16 14 C 0.51 16.30 7.83 87.66 0.69 16.98 16 15 O -0.59 -22.32 15.98 -3.02 -0.05 -22.37 16 16 C -0.12 -3.15 5.68 29.85 0.17 -2.98 16 17 C -0.01 -0.36 5.03 29.85 0.15 -0.21 16 18 C -0.19 -4.44 5.57 -18.62 -0.10 -4.54 16 19 C 0.06 1.12 11.73 83.00 0.97 2.10 16 20 N -0.59 -9.61 6.07 -187.61 -1.14 -10.75 16 21 H 0.43 4.14 8.96 -92.71 -0.83 3.30 16 22 C 0.08 1.57 7.28 39.03 0.28 1.85 16 23 C -0.14 -2.34 10.08 22.37 0.23 -2.11 16 24 C -0.11 -1.74 10.01 22.30 0.22 -1.51 16 25 C -0.15 -2.83 9.97 22.04 0.22 -2.61 16 26 C -0.09 -2.05 10.05 22.23 0.22 -1.83 16 27 C -0.13 -3.05 6.35 -20.20 -0.13 -3.18 16 28 C -0.17 -5.53 5.70 -10.79 -0.06 -5.59 16 29 C -0.17 -6.29 9.74 30.62 0.30 -6.00 16 30 C -0.17 -5.76 9.87 30.62 0.30 -5.46 16 31 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.37 18.48 7.80 -92.71 -0.72 17.76 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.41 13.41 8.14 -92.71 -0.75 12.66 16 36 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.07 1.79 8.10 -2.38 -0.02 1.77 16 39 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 40 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.11 3.17 8.11 -2.39 -0.02 3.15 16 46 H 0.08 3.53 6.68 -2.39 -0.02 3.51 16 47 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 48 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 49 H 0.08 3.04 6.22 -2.39 -0.01 3.03 16 Total: -1.00 -65.86 405.64 1.51 -64.36 By element: Atomic # 1 Polarization: 53.76 SS G_CDS: -1.32 Total: 52.44 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.19 Total: -16.50 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -4.34 Total: -124.04 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.86 1.51 -64.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752495220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.846 kcal (2) G-P(sol) polarization free energy of solvation -65.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds