Wall clock time and date at job start Wed Apr 1 2020 01:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99906 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.47474 * 110.99554 * 265.96989 * 13 12 10 15 15 C 1.53515 * 87.93229 * 221.29624 * 14 13 12 16 16 C 1.52998 * 114.34566 * 139.68434 * 15 14 13 17 17 N 1.46497 * 109.47153 * 91.07604 * 16 15 14 18 18 C 1.34778 * 119.99806 * 179.97438 * 17 16 15 19 19 O 1.21279 * 120.00171 * 0.02562 * 18 17 16 20 20 C 1.50708 * 119.99624 * 179.97438 * 18 17 16 21 21 H 1.08995 * 109.46572 * 60.00744 * 20 18 17 22 22 C 1.52995 * 109.47351 * 300.00589 * 20 18 17 23 23 C 1.52995 * 109.47222 * 180.02562 * 22 20 18 24 24 C 1.52998 * 109.47184 * 59.99795 * 23 22 20 25 25 C 1.53002 * 109.47374 * 299.99997 * 24 23 22 26 26 H 1.09002 * 109.47133 * 300.00439 * 25 24 23 27 27 F 1.39897 * 109.47544 * 180.02562 * 25 24 23 28 28 C 1.53003 * 109.46645 * 180.02562 * 20 18 17 29 29 C 1.47473 * 110.99654 * 170.00034 * 13 12 10 30 30 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 34 34 H 1.09001 * 113.48384 * 336.06306 * 14 13 12 35 35 H 1.09002 * 113.47897 * 106.53578 * 14 13 12 36 36 H 1.08999 * 114.17381 * 272.38257 * 15 14 13 37 37 H 1.08998 * 109.47293 * 211.08349 * 16 15 14 38 38 H 1.09002 * 109.47349 * 331.07918 * 16 15 14 39 39 H 0.97000 * 119.99868 * 0.02562 * 17 16 15 40 40 H 1.09007 * 109.47350 * 300.00077 * 22 20 18 41 41 H 1.09005 * 109.47151 * 59.99947 * 22 20 18 42 42 H 1.09007 * 109.46872 * 300.00187 * 23 22 20 43 43 H 1.08998 * 109.47605 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.47301 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.47349 * 60.00304 * 24 23 22 46 46 H 1.09006 * 109.47019 * 299.99889 * 28 20 18 47 47 H 1.08990 * 109.47205 * 60.00370 * 28 20 18 48 48 H 1.09002 * 113.47545 * 253.46383 * 29 13 12 49 49 H 1.09003 * 113.48400 * 23.87493 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0503 -3.7556 0.0099 14 6 6.3114 -4.2197 1.3851 15 6 7.5873 -4.8905 0.8571 16 6 8.7971 -4.7632 1.7850 17 7 8.8394 -5.9123 2.6928 18 6 9.8261 -6.0144 3.6051 19 8 10.6788 -5.1548 3.6749 20 6 9.8692 -7.1961 4.5393 21 1 9.9510 -8.1151 3.9590 22 6 8.5880 -7.2328 5.3748 23 6 8.6321 -8.4322 6.3236 24 6 9.8422 -8.3046 7.2511 25 6 11.1235 -8.2680 6.4156 26 1 11.2055 -9.1872 5.8356 27 9 12.2300 -8.1519 7.2636 28 6 11.0791 -7.0688 5.4671 29 6 7.5059 -3.8022 -0.2225 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 0.0004 32 1 5.9281 -1.8579 -0.8832 33 1 5.9200 -1.8555 0.8967 34 1 6.5058 -3.4092 2.0875 35 1 5.5689 -4.9280 1.7527 36 1 7.4370 -5.9030 0.4823 37 1 9.7101 -4.7363 1.1901 38 1 8.7147 -3.8444 2.3656 39 1 8.1576 -6.5999 2.6367 40 1 8.5062 -6.3137 5.9551 41 1 7.7258 -7.3233 4.7140 42 1 8.7141 -9.3515 5.7436 43 1 7.7191 -8.4587 6.9185 44 1 9.8738 -9.1593 7.9268 45 1 9.7602 -7.3854 7.8311 46 1 11.9921 -7.0425 4.8721 47 1 10.9970 -6.1499 6.0474 48 1 7.7757 -4.1565 -1.2174 49 1 8.0190 -2.8798 0.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753402036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:21 Heat of formation + Delta-G solvation = -100.528622 kcal Electronic energy + Delta-G solvation = -29115.858683 eV Core-core repulsion = 24799.650960 eV Total energy + Delta-G solvation = -4316.207723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -48.01770 -40.76160 -40.11043 -38.04878 -37.71326 -35.12170 -33.94510 -31.98653 -31.68027 -31.09581 -30.47282 -27.64182 -26.00067 -25.10252 -23.99764 -23.07230 -22.46543 -21.11361 -20.51180 -19.69587 -19.35329 -18.37263 -17.66515 -16.70808 -16.34214 -16.21221 -16.07479 -15.70121 -15.42576 -15.29966 -15.14911 -14.98733 -14.81022 -14.64306 -14.08514 -13.87529 -13.49595 -13.31140 -13.23098 -13.03822 -12.85739 -12.67296 -12.49395 -12.28415 -12.17372 -11.78196 -11.67844 -11.64244 -11.51909 -11.28274 -11.20288 -11.04310 -10.88219 -10.76150 -10.62880 -10.59545 -10.01512 -9.98119 -9.56976 -9.39312 -8.92684 -8.35102 -8.18134 -6.31508 -3.82911 2.29110 2.76322 3.01213 3.05818 3.14048 3.72801 3.86324 3.93006 3.95670 4.01224 4.09489 4.19197 4.32840 4.42484 4.48151 4.51473 4.66641 4.67651 4.73031 4.79947 4.94660 4.97450 5.01625 5.12362 5.20587 5.24411 5.34695 5.37509 5.41011 5.42505 5.51080 5.51936 5.53895 5.56182 5.58612 5.63326 5.67129 5.82321 5.83474 5.90875 5.98652 6.15462 6.39016 7.02167 7.14364 7.57723 7.87891 8.13753 8.60130 8.95097 9.42155 9.83843 10.81707 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019099 B = 0.001730 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.687084 B =16183.111599 C =16633.271229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.455 3.545 11 O -0.557 6.557 12 C 0.005 3.995 13 N -0.439 5.439 14 C 0.009 3.991 15 C -0.131 4.131 16 C 0.130 3.870 17 N -0.726 5.726 18 C 0.517 3.483 19 O -0.539 6.539 20 C -0.103 4.103 21 H 0.102 0.898 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.148 4.148 25 C 0.092 3.908 26 H 0.083 0.917 27 F -0.213 7.213 28 C -0.126 4.126 29 C 0.005 3.995 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.156 -15.133 10.289 29.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.241 3.759 11 O -0.438 6.438 12 C -0.127 4.127 13 N -0.161 5.161 14 C -0.120 4.120 15 C -0.150 4.150 16 C 0.006 3.994 17 N -0.377 5.377 18 C 0.303 3.697 19 O -0.416 6.416 20 C -0.125 4.125 21 H 0.120 0.880 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.186 4.186 25 C 0.056 3.944 26 H 0.101 0.899 27 F -0.194 7.194 28 C -0.164 4.164 29 C -0.125 4.125 30 H 0.084 0.916 31 H 0.202 0.798 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.671 -15.411 9.894 29.144 hybrid contribution 0.716 1.796 0.437 1.982 sum 23.387 -13.615 10.331 28.966 Atomic orbital electron populations 1.69622 1.05615 1.27455 1.49535 1.25031 0.95497 0.97945 0.97734 0.86671 0.79725 0.84084 0.78887 1.19613 1.20183 1.19597 1.19420 0.79233 0.96604 1.48022 0.86322 1.42226 1.07529 1.06106 1.67526 1.19560 0.87859 0.84555 0.83972 1.90561 1.69253 1.30927 1.53048 1.22553 0.96650 0.91345 1.02147 1.68819 1.11765 1.18628 1.16888 1.23976 0.96205 0.99726 0.92105 1.23016 0.94366 1.00747 0.96901 1.21374 0.98081 0.88862 0.91047 1.46014 1.29415 1.26171 1.36147 1.20520 0.81034 0.87432 0.80703 1.90725 1.38516 1.41807 1.70530 1.21256 0.97143 0.97819 0.96256 0.88044 1.21621 0.95724 0.99816 0.98266 1.21464 0.98024 0.98242 0.97518 1.22176 0.93867 1.03883 0.98701 1.21565 0.83077 0.99704 0.90055 0.89883 1.92822 1.55802 1.97511 1.73280 1.21911 0.98290 0.98717 0.97499 1.23842 0.91094 0.97712 0.99878 0.91635 0.79793 0.89211 0.92137 0.91307 0.89236 0.87248 0.91006 0.91215 0.76233 0.90827 0.90584 0.91181 0.90473 0.90567 0.90508 0.89968 0.89851 0.89263 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.38 27.74 -169.99 -4.71 14.66 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 10 C 0.46 10.38 7.85 -10.98 -0.09 10.30 16 11 O -0.56 -15.12 16.01 5.55 0.09 -15.03 16 12 C 0.01 0.09 5.30 -4.97 -0.03 0.06 16 13 N -0.44 -6.60 5.82 -246.11 -1.43 -8.04 16 14 C 0.01 0.11 7.29 -7.56 -0.06 0.06 16 15 C -0.13 -1.17 4.08 -90.09 -0.37 -1.54 16 16 C 0.13 1.09 5.59 -4.04 -0.02 1.07 16 17 N -0.73 -5.28 5.45 -60.29 -0.33 -5.61 16 18 C 0.52 4.60 7.15 -10.98 -0.08 4.52 16 19 O -0.54 -7.08 15.98 5.56 0.09 -7.00 16 20 C -0.10 -0.60 2.53 -91.77 -0.23 -0.83 16 21 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 22 C -0.12 -0.56 5.10 -26.74 -0.14 -0.69 16 23 C -0.11 -0.44 5.92 -26.73 -0.16 -0.60 16 24 C -0.15 -0.74 5.66 -26.73 -0.15 -0.89 16 25 C 0.09 0.57 3.87 -26.75 -0.10 0.47 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 F -0.21 -1.95 17.08 2.25 0.04 -1.91 16 28 C -0.13 -0.90 4.22 -26.75 -0.11 -1.02 16 29 C 0.00 0.05 7.26 -7.56 -0.05 -0.01 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 32 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 33 H 0.06 0.86 7.30 -51.93 -0.38 0.48 16 34 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 39 H 0.40 2.02 7.89 -40.82 -0.32 1.70 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.29 7.57 -51.93 -0.39 -0.10 16 42 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -36.08 396.26 -9.39 -45.47 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.98 Total: 7.61 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.83 Total: 3.13 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -1.04 Total: -52.90 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.18 Total: -22.03 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.08 -9.39 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.061 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds