Wall clock time and date at job start Wed Apr 1 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99906 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.47474 * 110.99554 * 265.96989 * 13 12 10 15 15 C 1.53515 * 87.93229 * 221.29624 * 14 13 12 16 16 C 1.52998 * 114.34566 * 139.68434 * 15 14 13 17 17 N 1.46497 * 109.47153 * 91.07604 * 16 15 14 18 18 C 1.34778 * 119.99806 * 179.97438 * 17 16 15 19 19 O 1.21279 * 120.00171 * 0.02562 * 18 17 16 20 20 C 1.50708 * 119.99624 * 179.97438 * 18 17 16 21 21 H 1.08995 * 109.46572 * 60.00744 * 20 18 17 22 22 C 1.52995 * 109.47351 * 300.00589 * 20 18 17 23 23 C 1.52995 * 109.47222 * 180.02562 * 22 20 18 24 24 C 1.52998 * 109.47184 * 59.99795 * 23 22 20 25 25 C 1.53002 * 109.47374 * 299.99997 * 24 23 22 26 26 H 1.09002 * 109.47133 * 300.00439 * 25 24 23 27 27 F 1.39897 * 109.47544 * 180.02562 * 25 24 23 28 28 C 1.53003 * 109.46645 * 180.02562 * 20 18 17 29 29 C 1.47473 * 110.99654 * 170.00034 * 13 12 10 30 30 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 34 34 H 1.09001 * 113.48384 * 336.06306 * 14 13 12 35 35 H 1.09002 * 113.47897 * 106.53578 * 14 13 12 36 36 H 1.08999 * 114.17381 * 272.38257 * 15 14 13 37 37 H 1.08998 * 109.47293 * 211.08349 * 16 15 14 38 38 H 1.09002 * 109.47349 * 331.07918 * 16 15 14 39 39 H 0.97000 * 119.99868 * 0.02562 * 17 16 15 40 40 H 1.09007 * 109.47350 * 300.00077 * 22 20 18 41 41 H 1.09005 * 109.47151 * 59.99947 * 22 20 18 42 42 H 1.09007 * 109.46872 * 300.00187 * 23 22 20 43 43 H 1.08998 * 109.47605 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.47301 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.47349 * 60.00304 * 24 23 22 46 46 H 1.09006 * 109.47019 * 299.99889 * 28 20 18 47 47 H 1.08990 * 109.47205 * 60.00370 * 28 20 18 48 48 H 1.09002 * 113.47545 * 253.46383 * 29 13 12 49 49 H 1.09003 * 113.48400 * 23.87493 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0503 -3.7556 0.0099 14 6 6.3114 -4.2197 1.3851 15 6 7.5873 -4.8905 0.8571 16 6 8.7971 -4.7632 1.7850 17 7 8.8394 -5.9123 2.6928 18 6 9.8261 -6.0144 3.6051 19 8 10.6788 -5.1548 3.6749 20 6 9.8692 -7.1961 4.5393 21 1 9.9510 -8.1151 3.9590 22 6 8.5880 -7.2328 5.3748 23 6 8.6321 -8.4322 6.3236 24 6 9.8422 -8.3046 7.2511 25 6 11.1235 -8.2680 6.4156 26 1 11.2055 -9.1872 5.8356 27 9 12.2300 -8.1519 7.2636 28 6 11.0791 -7.0688 5.4671 29 6 7.5059 -3.8022 -0.2225 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 0.0004 32 1 5.9281 -1.8579 -0.8832 33 1 5.9200 -1.8555 0.8967 34 1 6.5058 -3.4092 2.0875 35 1 5.5689 -4.9280 1.7527 36 1 7.4370 -5.9030 0.4823 37 1 9.7101 -4.7363 1.1901 38 1 8.7147 -3.8444 2.3656 39 1 8.1576 -6.5999 2.6367 40 1 8.5062 -6.3137 5.9551 41 1 7.7258 -7.3233 4.7140 42 1 8.7141 -9.3515 5.7436 43 1 7.7191 -8.4587 6.9185 44 1 9.8738 -9.1593 7.9268 45 1 9.7602 -7.3854 7.8311 46 1 11.9921 -7.0425 4.8721 47 1 10.9970 -6.1499 6.0474 48 1 7.7757 -4.1565 -1.2174 49 1 8.0190 -2.8798 0.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753402036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:19 Heat of formation + Delta-G solvation = -129.261000 kcal Electronic energy + Delta-G solvation = -29117.104612 eV Core-core repulsion = 24799.650960 eV Total energy + Delta-G solvation = -4317.453652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -48.62904 -41.61777 -40.96479 -39.75831 -38.29780 -36.06869 -35.80750 -33.77164 -32.64878 -31.87099 -31.07821 -28.75703 -26.90876 -26.66147 -24.85368 -23.60884 -23.40230 -21.70826 -21.27043 -21.07751 -20.46207 -20.18635 -18.36484 -17.78729 -17.41751 -16.97981 -16.81424 -16.67031 -16.54637 -16.47397 -16.00224 -15.87890 -15.78229 -15.42378 -15.10266 -14.95542 -14.71761 -14.43732 -14.36498 -14.16871 -13.82658 -13.64049 -13.56526 -13.40078 -13.04253 -12.80465 -12.66437 -12.43378 -12.34658 -12.27473 -12.07772 -11.99676 -11.88945 -11.66779 -11.56210 -11.52358 -11.47936 -11.23265 -10.69732 -10.46515 -10.25121 -10.08991 -9.72686 -8.42083 -6.02920 1.28726 1.34474 1.43141 1.61619 1.95749 2.13970 2.21848 2.67254 3.12937 3.23232 3.35881 3.47548 3.50992 3.56505 3.72839 3.88167 3.97012 4.05135 4.07753 4.16969 4.23620 4.25575 4.29124 4.35732 4.39802 4.40000 4.49445 4.56382 4.57503 4.62318 4.73774 4.82658 4.88484 4.93438 5.02566 5.09040 5.17128 5.18581 5.21222 5.24075 5.37985 5.42297 5.48662 5.52923 5.91047 6.04648 6.54708 6.59321 6.87940 7.24337 7.39460 7.97408 8.75627 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019099 B = 0.001730 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.687084 B =16183.111599 C =16633.271229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.232 1.232 7 C -0.328 4.328 8 H 0.054 0.946 9 N -0.594 5.594 10 C 0.452 3.548 11 O -0.609 6.609 12 C 0.018 3.982 13 N -0.480 5.480 14 C 0.002 3.998 15 C -0.103 4.103 16 C 0.137 3.863 17 N -0.715 5.715 18 C 0.514 3.486 19 O -0.587 6.587 20 C -0.094 4.094 21 H 0.132 0.868 22 C -0.114 4.114 23 C -0.109 4.109 24 C -0.147 4.147 25 C 0.089 3.911 26 H 0.108 0.892 27 F -0.233 7.233 28 C -0.124 4.124 29 C 0.010 3.990 30 H 0.279 0.721 31 H 0.389 0.611 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.416 0.584 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.688 -14.803 10.074 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.156 1.156 7 C -0.457 4.457 8 H 0.072 0.928 9 N -0.236 5.236 10 C 0.240 3.760 11 O -0.493 6.493 12 C -0.114 4.114 13 N -0.203 5.203 14 C -0.127 4.127 15 C -0.122 4.122 16 C 0.012 3.988 17 N -0.367 5.367 18 C 0.302 3.698 19 O -0.467 6.467 20 C -0.115 4.115 21 H 0.149 0.851 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.185 4.185 25 C 0.053 3.947 26 H 0.126 0.874 27 F -0.214 7.214 28 C -0.162 4.162 29 C -0.119 4.119 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.118 0.882 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 25.210 -15.112 9.674 30.944 hybrid contribution -0.137 1.564 0.496 1.646 sum 25.074 -13.548 10.169 30.260 Atomic orbital electron populations 1.69805 1.08104 1.29217 1.50396 1.26114 0.96491 1.02694 0.96141 0.85362 0.79436 0.76749 0.79950 1.18124 1.20005 1.15563 1.18995 0.81533 0.94878 1.50335 0.92768 1.42070 1.05814 1.07593 1.68171 1.20924 0.90848 0.83243 0.81020 1.90532 1.71319 1.32851 1.54598 1.22484 0.90870 0.93212 1.04802 1.68769 1.15028 1.17888 1.18577 1.24045 0.97329 0.99948 0.91363 1.22811 0.92633 1.00820 0.95922 1.21244 0.97736 0.88871 0.90917 1.45942 1.29276 1.26126 1.35391 1.21037 0.80379 0.87591 0.80800 1.90706 1.40409 1.43690 1.71897 1.21254 0.96938 0.97588 0.95739 0.85055 1.21629 0.95531 0.99659 0.98403 1.21456 0.97529 0.98442 0.97236 1.22174 0.93804 1.03623 0.98889 1.21781 0.82871 1.00056 0.89970 0.87407 1.92782 1.57021 1.97610 1.73968 1.21847 0.98498 0.98295 0.97567 1.23930 0.88087 0.98980 1.00892 0.91157 0.77573 0.86405 0.89240 0.90664 0.91274 0.86254 0.90683 0.92170 0.74675 0.92547 0.89099 0.89215 0.89854 0.89701 0.91838 0.91296 0.92264 0.88231 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.96 21.66 0.30 -56.21 16 2 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 3 Si 0.97 38.84 27.74 68.60 1.90 40.75 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 7 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 8 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -28.20 5.09 -306.98 -1.56 -29.76 16 10 C 0.45 20.59 7.85 87.66 0.69 21.27 16 11 O -0.61 -34.33 16.01 -3.07 -0.05 -34.38 16 12 C 0.02 0.54 5.30 85.56 0.45 0.99 16 13 N -0.48 -13.48 5.82 -932.54 -5.43 -18.91 16 14 C 0.00 0.05 7.29 83.57 0.61 0.66 16 15 C -0.10 -1.57 4.08 -10.45 -0.04 -1.61 16 16 C 0.14 1.97 5.59 86.38 0.48 2.45 16 17 N -0.72 -8.89 5.45 -463.06 -2.52 -11.41 16 18 C 0.51 8.51 7.15 87.66 0.63 9.14 16 19 O -0.59 -15.33 15.98 -3.03 -0.05 -15.37 16 20 C -0.09 -0.93 2.53 -11.54 -0.03 -0.96 16 21 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 22 C -0.11 -0.88 5.10 30.59 0.16 -0.72 16 23 C -0.11 -0.57 5.92 30.59 0.18 -0.39 16 24 C -0.15 -1.26 5.66 30.59 0.17 -1.09 16 25 C 0.09 1.00 3.87 30.58 0.12 1.12 16 26 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 27 F -0.23 -4.21 17.08 44.97 0.77 -3.44 16 28 C -0.12 -1.74 4.22 30.58 0.13 -1.61 16 29 C 0.01 0.17 7.26 83.57 0.61 0.78 16 30 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 31 H 0.39 15.21 5.76 -92.71 -0.53 14.67 16 32 H 0.12 2.89 8.08 -2.38 -0.02 2.87 16 33 H 0.09 2.19 7.30 -2.39 -0.02 2.17 16 34 H 0.08 1.62 7.16 -2.39 -0.02 1.61 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.03 7.82 -2.39 -0.02 1.01 16 39 H 0.42 3.02 7.89 -92.71 -0.73 2.29 16 40 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.09 0.45 7.57 -2.38 -0.02 0.43 16 42 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 1.13 8.10 -2.38 -0.02 1.12 16 47 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 48 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.09 1.25 7.87 -2.39 -0.02 1.24 16 Total: -1.00 -86.10 396.26 -1.52 -87.62 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.36 Total: 30.02 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.47 Total: 11.11 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -9.21 Total: -116.29 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.10 Total: -49.76 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.77 Total: -3.44 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.75 kcal Total: -86.10 -1.52 -87.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.637 kcal (2) G-P(sol) polarization free energy of solvation -86.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds