Wall clock time and date at job start Wed Apr 1 2020 01:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00089 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47474 * 110.99554 * 265.96989 * 13 12 10 15 15 C 1.53515 * 87.93229 * 221.29624 * 14 13 12 16 16 C 1.53000 * 114.17363 * 139.67279 * 15 14 13 17 17 N 1.46492 * 109.47079 * 91.16074 * 16 15 14 18 18 C 1.34775 * 119.99871 * 180.02562 * 17 16 15 19 19 O 1.21282 * 120.00090 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00136 * 180.02562 * 18 17 16 21 21 H 1.08996 * 109.46983 * 299.99509 * 20 18 17 22 22 C 1.52998 * 109.47050 * 59.99927 * 20 18 17 23 23 C 1.53007 * 109.47040 * 180.02562 * 22 20 18 24 24 C 1.52998 * 109.46738 * 299.99936 * 23 22 20 25 25 C 1.52993 * 109.47625 * 60.00151 * 24 23 22 26 26 H 1.08999 * 109.47352 * 179.97438 * 25 24 23 27 27 F 1.39904 * 109.47570 * 59.99589 * 25 24 23 28 28 C 1.53005 * 109.47018 * 179.97438 * 20 18 17 29 29 C 1.47483 * 110.99811 * 169.99675 * 13 12 10 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.08995 * 113.47997 * 336.06182 * 14 13 12 35 35 H 1.09002 * 113.47897 * 106.53578 * 14 13 12 36 36 H 1.08999 * 114.17381 * 272.38257 * 15 14 13 37 37 H 1.09000 * 109.47154 * 211.16571 * 16 15 14 38 38 H 1.09006 * 109.46677 * 331.15549 * 16 15 14 39 39 H 0.96995 * 120.00296 * 0.02562 * 17 16 15 40 40 H 1.08999 * 109.47029 * 299.99865 * 22 20 18 41 41 H 1.08990 * 109.47375 * 60.00357 * 22 20 18 42 42 H 1.08994 * 109.47394 * 179.97438 * 23 22 20 43 43 H 1.09003 * 109.46831 * 59.99519 * 23 22 20 44 44 H 1.09003 * 109.47119 * 299.99406 * 24 23 22 45 45 H 1.09005 * 109.46753 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.47085 * 299.99743 * 28 20 18 47 47 H 1.09004 * 109.47001 * 60.00163 * 28 20 18 48 48 H 1.08998 * 113.47493 * 253.46813 * 29 13 12 49 49 H 1.08996 * 113.47429 * 23.88220 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.4694 -6.4367 -1.4013 15 6 2.4126 -7.8774 -0.8742 16 6 1.6960 -8.8574 -1.8054 17 7 2.6694 -9.4684 -2.7138 18 6 2.2631 -10.3699 -3.6295 19 8 1.0916 -10.6757 -3.7012 20 6 3.2645 -10.9989 -4.5637 21 1 3.7472 -10.2214 -5.1558 22 6 4.3202 -11.7493 -3.7494 23 6 5.3373 -12.3874 -4.6978 24 6 4.6209 -13.3667 -5.6298 25 6 3.5652 -12.6163 -6.4441 26 1 3.0552 -13.3139 -7.1084 27 9 4.1846 -11.6180 -7.2037 28 6 2.5478 -11.9788 -5.4949 29 6 1.5112 -7.2636 0.2063 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 1.6700 -6.1993 -2.1031 35 1 3.4539 -6.1475 -1.7691 36 1 3.3647 -8.2537 -0.5002 37 1 1.2139 -9.6350 -1.2129 38 1 0.9432 -8.3232 -2.3852 39 1 3.6063 -9.2241 -2.6563 40 1 4.8308 -11.0515 -3.0857 41 1 3.8375 -12.5268 -3.1574 42 1 6.0897 -12.9216 -4.1178 43 1 5.8199 -11.6096 -5.2896 44 1 4.1383 -14.1445 -5.0380 45 1 5.3454 -13.8209 -6.3058 46 1 2.0654 -12.7562 -4.9025 47 1 1.7954 -11.4445 -6.0751 48 1 1.6836 -7.6749 1.2008 49 1 0.4559 -7.2464 -0.0657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753402038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:31 Heat of formation + Delta-G solvation = -105.936867 kcal Electronic energy + Delta-G solvation = -29147.077171 eV Core-core repulsion = 24830.634929 eV Total energy + Delta-G solvation = -4316.442242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -48.03301 -40.63549 -39.95951 -37.81465 -37.46146 -35.03667 -33.87262 -31.92862 -31.31628 -31.03815 -30.50285 -27.48972 -25.90140 -25.05827 -24.01288 -23.18343 -22.47730 -20.95962 -20.16177 -19.61390 -19.18562 -17.94933 -17.68505 -16.70763 -16.25390 -16.13689 -15.89716 -15.71822 -15.49625 -15.27748 -15.05625 -14.84185 -14.68283 -14.37596 -13.90095 -13.80260 -13.62382 -13.21994 -13.16204 -12.90243 -12.73766 -12.55825 -12.45017 -12.24025 -12.02720 -11.63592 -11.59395 -11.49992 -11.36905 -11.29897 -11.05458 -10.89470 -10.76182 -10.58505 -10.52020 -10.43130 -10.19536 -9.93654 -9.47602 -9.31374 -8.80305 -8.19577 -7.94433 -6.39882 -3.80678 2.37573 2.85849 3.21096 3.26478 3.30943 3.91111 3.95737 3.97270 4.01728 4.15018 4.23172 4.27644 4.33627 4.49636 4.53830 4.61612 4.74375 4.77790 4.85415 4.95499 4.99939 5.04693 5.07012 5.20550 5.30867 5.37248 5.38863 5.43206 5.47980 5.49310 5.51134 5.58122 5.63876 5.66222 5.69917 5.73263 5.74165 5.87734 5.93164 6.05955 6.23808 6.28153 6.52963 7.16071 7.22503 7.56469 7.95389 8.07570 8.64093 9.20099 9.56488 10.09033 10.77939 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.001667 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.036541 B =16794.385807 C =17265.458410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.576 6.576 12 C 0.008 3.992 13 N -0.440 5.440 14 C 0.009 3.991 15 C -0.131 4.131 16 C 0.130 3.870 17 N -0.726 5.726 18 C 0.518 3.482 19 O -0.542 6.542 20 C -0.108 4.108 21 H 0.104 0.896 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.148 4.148 25 C 0.091 3.909 26 H 0.086 0.914 27 F -0.212 7.212 28 C -0.125 4.125 29 C 0.005 3.995 30 H 0.272 0.728 31 H 0.391 0.609 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 -28.241 -9.210 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.459 6.459 12 C -0.124 4.124 13 N -0.161 5.161 14 C -0.120 4.120 15 C -0.151 4.151 16 C 0.006 3.994 17 N -0.377 5.377 18 C 0.304 3.696 19 O -0.419 6.419 20 C -0.130 4.130 21 H 0.122 0.878 22 C -0.150 4.150 23 C -0.158 4.158 24 C -0.185 4.185 25 C 0.055 3.945 26 H 0.104 0.896 27 F -0.193 7.193 28 C -0.163 4.163 29 C -0.125 4.125 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.183 -27.982 -8.810 29.790 hybrid contribution -0.583 1.042 -0.473 1.285 sum 4.600 -26.940 -9.283 28.863 Atomic orbital electron populations 1.69603 1.05915 1.28211 1.50724 1.25257 0.95641 0.99684 0.97408 0.85918 0.78752 0.80489 0.79053 1.19939 1.20985 1.19906 1.19645 0.93316 0.82253 1.47628 0.88025 1.41869 1.09132 1.04586 1.64821 1.19666 0.88382 0.84384 0.84432 1.90517 1.13670 1.86977 1.54757 1.22512 0.94706 0.93108 1.02056 1.68817 1.30497 1.00082 1.16733 1.23962 1.03194 0.92607 0.92219 1.23020 1.00610 0.94503 0.96919 1.21377 0.91326 0.95645 0.91010 1.46022 1.12156 1.43572 1.35974 1.20570 0.89394 0.78873 0.80761 1.90707 1.18584 1.62020 1.70597 1.21313 0.95953 0.99191 0.96516 0.87795 1.21563 0.95780 0.99953 0.97659 1.21505 0.97743 0.99002 0.97501 1.22163 0.98507 0.98779 0.99098 1.21613 0.93302 0.87756 0.91864 0.89634 1.92809 1.84695 1.64039 1.77785 1.21948 0.97409 0.99539 0.97420 1.23834 0.97102 0.91867 0.99715 0.91859 0.77553 0.89357 0.92248 0.91331 0.89392 0.87335 0.91055 0.91207 0.76267 0.90909 0.91114 0.90937 0.90936 0.89988 0.90646 0.89328 0.89951 0.89380 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 10 C 0.45 10.77 7.85 -10.98 -0.09 10.68 16 11 O -0.58 -16.06 16.01 5.55 0.09 -15.97 16 12 C 0.01 0.15 5.30 -4.97 -0.03 0.12 16 13 N -0.44 -7.13 5.82 -246.06 -1.43 -8.56 16 14 C 0.01 0.13 7.28 -7.54 -0.05 0.07 16 15 C -0.13 -1.31 4.09 -90.08 -0.37 -1.68 16 16 C 0.13 1.22 5.58 -4.05 -0.02 1.20 16 17 N -0.73 -6.07 5.45 -60.30 -0.33 -6.40 16 18 C 0.52 5.10 7.15 -10.99 -0.08 5.02 16 19 O -0.54 -7.40 15.98 5.56 0.09 -7.31 16 20 C -0.11 -0.78 2.40 -91.77 -0.22 -1.00 16 21 H 0.10 0.75 7.80 -51.93 -0.41 0.34 16 22 C -0.11 -0.59 5.10 -26.73 -0.14 -0.73 16 23 C -0.12 -0.57 5.80 -26.73 -0.16 -0.73 16 24 C -0.15 -0.67 5.72 -26.74 -0.15 -0.83 16 25 C 0.09 0.54 4.13 -26.71 -0.11 0.43 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 F -0.21 -1.84 16.05 2.25 0.04 -1.80 16 28 C -0.13 -0.90 4.29 -26.70 -0.11 -1.01 16 29 C 0.00 0.05 7.26 -7.53 -0.05 0.00 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 32 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 33 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 34 H 0.07 0.91 7.15 -51.93 -0.37 0.53 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.74 7.81 -51.93 -0.41 0.34 16 39 H 0.40 2.53 7.89 -40.82 -0.32 2.21 16 40 H 0.07 0.32 7.56 -51.93 -0.39 -0.07 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.40 7.80 -51.93 -0.41 0.00 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 47 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -34.79 397.76 -9.72 -44.51 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.99 Total: 8.58 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.82 Total: 3.44 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -1.09 Total: -53.69 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.18 Total: -23.28 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.79 -9.72 -44.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.426 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds