Wall clock time and date at job start Wed Apr 1 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00089 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47474 * 110.99554 * 265.96989 * 13 12 10 15 15 C 1.53515 * 87.93229 * 221.29624 * 14 13 12 16 16 C 1.53000 * 114.17363 * 139.67279 * 15 14 13 17 17 N 1.46492 * 109.47079 * 91.16074 * 16 15 14 18 18 C 1.34775 * 119.99871 * 180.02562 * 17 16 15 19 19 O 1.21282 * 120.00090 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00136 * 180.02562 * 18 17 16 21 21 H 1.08996 * 109.46983 * 299.99509 * 20 18 17 22 22 C 1.52998 * 109.47050 * 59.99927 * 20 18 17 23 23 C 1.53007 * 109.47040 * 180.02562 * 22 20 18 24 24 C 1.52998 * 109.46738 * 299.99936 * 23 22 20 25 25 C 1.52993 * 109.47625 * 60.00151 * 24 23 22 26 26 H 1.08999 * 109.47352 * 179.97438 * 25 24 23 27 27 F 1.39904 * 109.47570 * 59.99589 * 25 24 23 28 28 C 1.53005 * 109.47018 * 179.97438 * 20 18 17 29 29 C 1.47483 * 110.99811 * 169.99675 * 13 12 10 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.08995 * 113.47997 * 336.06182 * 14 13 12 35 35 H 1.09002 * 113.47897 * 106.53578 * 14 13 12 36 36 H 1.08999 * 114.17381 * 272.38257 * 15 14 13 37 37 H 1.09000 * 109.47154 * 211.16571 * 16 15 14 38 38 H 1.09006 * 109.46677 * 331.15549 * 16 15 14 39 39 H 0.96995 * 120.00296 * 0.02562 * 17 16 15 40 40 H 1.08999 * 109.47029 * 299.99865 * 22 20 18 41 41 H 1.08990 * 109.47375 * 60.00357 * 22 20 18 42 42 H 1.08994 * 109.47394 * 179.97438 * 23 22 20 43 43 H 1.09003 * 109.46831 * 59.99519 * 23 22 20 44 44 H 1.09003 * 109.47119 * 299.99406 * 24 23 22 45 45 H 1.09005 * 109.46753 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.47085 * 299.99743 * 28 20 18 47 47 H 1.09004 * 109.47001 * 60.00163 * 28 20 18 48 48 H 1.08998 * 113.47493 * 253.46813 * 29 13 12 49 49 H 1.08996 * 113.47429 * 23.88220 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.4694 -6.4367 -1.4013 15 6 2.4126 -7.8774 -0.8742 16 6 1.6960 -8.8574 -1.8054 17 7 2.6694 -9.4684 -2.7138 18 6 2.2631 -10.3699 -3.6295 19 8 1.0916 -10.6757 -3.7012 20 6 3.2645 -10.9989 -4.5637 21 1 3.7472 -10.2214 -5.1558 22 6 4.3202 -11.7493 -3.7494 23 6 5.3373 -12.3874 -4.6978 24 6 4.6209 -13.3667 -5.6298 25 6 3.5652 -12.6163 -6.4441 26 1 3.0552 -13.3139 -7.1084 27 9 4.1846 -11.6180 -7.2037 28 6 2.5478 -11.9788 -5.4949 29 6 1.5112 -7.2636 0.2063 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 1.6700 -6.1993 -2.1031 35 1 3.4539 -6.1475 -1.7691 36 1 3.3647 -8.2537 -0.5002 37 1 1.2139 -9.6350 -1.2129 38 1 0.9432 -8.3232 -2.3852 39 1 3.6063 -9.2241 -2.6563 40 1 4.8308 -11.0515 -3.0857 41 1 3.8375 -12.5268 -3.1574 42 1 6.0897 -12.9216 -4.1178 43 1 5.8199 -11.6096 -5.2896 44 1 4.1383 -14.1445 -5.0380 45 1 5.3454 -13.8209 -6.3058 46 1 2.0654 -12.7562 -4.9025 47 1 1.7954 -11.4445 -6.0751 48 1 1.6836 -7.6749 1.2008 49 1 0.4559 -7.2464 -0.0657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753402038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:29 Heat of formation + Delta-G solvation = -132.038416 kcal Electronic energy + Delta-G solvation = -29148.209019 eV Core-core repulsion = 24830.634929 eV Total energy + Delta-G solvation = -4317.574090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -48.61085 -41.59979 -40.89139 -39.62776 -38.05597 -36.04910 -35.79290 -33.33279 -32.61462 -31.82835 -31.26746 -28.68323 -26.92984 -26.73452 -24.89324 -23.74646 -23.44855 -21.66886 -21.04551 -20.79260 -20.37182 -19.90030 -18.46918 -17.80559 -17.45933 -16.97207 -16.70827 -16.57384 -16.43719 -16.35174 -16.26450 -15.92128 -15.79811 -15.40909 -15.33329 -14.96020 -14.55693 -14.40042 -14.10196 -13.69524 -13.63257 -13.54301 -13.46225 -13.25351 -13.01282 -12.95577 -12.68819 -12.49690 -12.45668 -12.36830 -12.13917 -12.09481 -11.90221 -11.74722 -11.53159 -11.49015 -11.39882 -11.02779 -10.69926 -10.39564 -10.09918 -10.02527 -9.73177 -8.47546 -5.96597 1.38745 1.40232 1.51476 1.60853 2.04520 2.14133 2.28041 2.82546 3.18112 3.27934 3.43507 3.47049 3.57025 3.67617 3.72653 3.86950 3.98089 4.08810 4.13996 4.16423 4.24993 4.27963 4.30798 4.38083 4.41344 4.46159 4.50694 4.52437 4.62210 4.65917 4.71398 4.80390 4.86439 4.96674 5.06151 5.08178 5.10653 5.18814 5.22660 5.28229 5.36741 5.39642 5.45069 5.48105 5.89706 6.08402 6.52336 6.59625 7.11785 7.21995 7.55257 8.11724 8.69653 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.001667 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.036541 B =16794.385807 C =17265.458410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.619 6.619 12 C 0.022 3.978 13 N -0.476 5.476 14 C 0.002 3.998 15 C -0.101 4.101 16 C 0.137 3.863 17 N -0.717 5.717 18 C 0.516 3.484 19 O -0.583 6.583 20 C -0.104 4.104 21 H 0.103 0.897 22 C -0.107 4.107 23 C -0.119 4.119 24 C -0.146 4.146 25 C 0.088 3.912 26 H 0.101 0.899 27 F -0.229 7.229 28 C -0.124 4.124 29 C 0.009 3.991 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -29.576 -8.950 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.505 6.505 12 C -0.110 4.110 13 N -0.198 5.198 14 C -0.127 4.127 15 C -0.120 4.120 16 C 0.013 3.987 17 N -0.369 5.369 18 C 0.304 3.696 19 O -0.464 6.464 20 C -0.125 4.125 21 H 0.121 0.879 22 C -0.145 4.145 23 C -0.157 4.157 24 C -0.183 4.183 25 C 0.052 3.948 26 H 0.119 0.881 27 F -0.210 7.210 28 C -0.162 4.162 29 C -0.120 4.120 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.251 0.749 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.119 0.881 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.434 -29.326 -8.544 31.025 hybrid contribution -0.665 1.427 -0.559 1.670 sum 4.769 -27.900 -9.103 29.732 Atomic orbital electron populations 1.69665 1.06815 1.29358 1.50314 1.26055 0.96580 1.02424 0.96277 0.84984 0.77766 0.76599 0.78950 1.19720 1.19389 1.19688 1.19623 0.92665 0.84084 1.50090 0.90439 1.41957 1.09269 1.04740 1.65412 1.20813 0.88283 0.85940 0.82123 1.90478 1.15885 1.87940 1.56184 1.22384 0.94451 0.90275 1.03896 1.68775 1.31393 1.01277 1.18390 1.24028 1.02270 0.95028 0.91400 1.22819 1.00918 0.92464 0.95817 1.21247 0.91147 0.95466 0.90859 1.45966 1.12692 1.42868 1.35343 1.21015 0.89208 0.78575 0.80817 1.90688 1.20369 1.63474 1.71822 1.21314 0.95739 0.99280 0.96173 0.87891 1.21567 0.95260 1.00056 0.97614 1.21511 0.97802 0.98909 0.97444 1.22179 0.98206 0.98803 0.99120 1.21794 0.93587 0.87486 0.91978 0.88132 1.92776 1.84994 1.64942 1.78273 1.21920 0.97386 0.99451 0.97472 1.23927 0.97969 0.89159 1.00928 0.91292 0.77059 0.87390 0.90246 0.91107 0.91226 0.86041 0.90406 0.92370 0.74897 0.89793 0.90856 0.89505 0.91852 0.88620 0.89929 0.89172 0.91901 0.88082 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.28 13.05 21.67 0.28 -49.99 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.47 29.55 68.60 2.03 45.49 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.41 9.68 84.04 0.81 -18.59 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -30.25 5.29 -306.97 -1.62 -31.87 16 10 C 0.44 21.61 7.85 87.66 0.69 22.30 16 11 O -0.62 -35.49 16.01 -3.07 -0.05 -35.54 16 12 C 0.02 0.75 5.30 85.56 0.45 1.21 16 13 N -0.48 -14.90 5.82 -932.40 -5.43 -20.33 16 14 C 0.00 0.05 7.28 83.58 0.61 0.66 16 15 C -0.10 -1.81 4.09 -10.45 -0.04 -1.85 16 16 C 0.14 2.32 5.58 86.38 0.48 2.80 16 17 N -0.72 -10.94 5.45 -463.07 -2.52 -13.46 16 18 C 0.52 9.76 7.15 87.66 0.63 10.39 16 19 O -0.58 -15.82 15.98 -3.04 -0.05 -15.87 16 20 C -0.10 -1.41 2.40 -11.54 -0.03 -1.43 16 21 H 0.10 1.43 7.80 -2.39 -0.02 1.41 16 22 C -0.11 -0.93 5.10 30.60 0.16 -0.77 16 23 C -0.12 -0.90 5.80 30.60 0.18 -0.73 16 24 C -0.15 -1.04 5.72 30.59 0.17 -0.86 16 25 C 0.09 0.96 4.13 30.61 0.13 1.09 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 F -0.23 -3.84 16.05 44.97 0.72 -3.12 16 28 C -0.12 -1.73 4.29 30.61 0.13 -1.60 16 29 C 0.01 0.19 7.26 83.58 0.61 0.79 16 30 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 32 H 0.11 3.30 8.08 -2.38 -0.02 3.28 16 33 H 0.08 2.43 7.30 -2.39 -0.02 2.41 16 34 H 0.07 1.82 7.15 -2.39 -0.02 1.80 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.16 7.81 -2.38 -0.02 1.15 16 39 H 0.41 4.44 7.89 -92.71 -0.73 3.71 16 40 H 0.08 0.54 7.56 -2.39 -0.02 0.52 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.06 0.61 7.80 -2.39 -0.02 0.60 16 44 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 47 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 48 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.09 1.53 7.87 -2.39 -0.02 1.51 16 Total: -1.00 -76.78 397.76 -1.69 -78.47 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.49 Total: 33.11 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 5.44 Total: 13.11 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -9.29 Total: -115.66 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.10 Total: -51.41 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.72 Total: -3.12 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -76.78 -1.69 -78.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.568 kcal (2) G-P(sol) polarization free energy of solvation -76.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds