Wall clock time and date at job start Wed Apr 1 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86795 * 120.00368 * 2 1 4 4 H 1.48498 * 109.47527 * 270.00103 * 3 2 1 5 5 H 1.48505 * 109.46906 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.47065 * 150.00001 * 3 2 1 7 7 C 1.38956 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00420 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99812 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.30993 * 120.00196 * 125.00091 * 15 14 13 17 17 C 1.50710 * 120.00228 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.47015 * 124.99572 * 17 16 15 19 19 C 1.34773 * 119.99723 * 179.97438 * 18 17 16 20 20 O 1.21285 * 120.00104 * 0.02562 * 19 18 17 21 21 C 1.50705 * 120.00124 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.46803 * 300.00865 * 21 19 18 23 23 C 1.53000 * 109.47128 * 180.02562 * 21 19 18 24 24 C 1.53001 * 109.46718 * 180.02562 * 23 21 19 25 25 C 1.53003 * 109.47381 * 60.00386 * 24 23 21 26 26 C 1.53004 * 109.46785 * 299.99870 * 25 24 23 27 27 H 1.09000 * 109.47386 * 180.02562 * 26 25 24 28 28 F 1.39905 * 109.47220 * 299.99934 * 26 25 24 29 29 C 1.53001 * 109.47563 * 59.99770 * 26 25 24 30 30 H 0.97004 * 119.99652 * 359.97438 * 1 2 3 31 31 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 33 33 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 34 34 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 35 35 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 36 36 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 37 37 H 1.08001 * 119.99932 * 304.99608 * 15 14 13 38 38 H 1.08005 * 120.00295 * 359.97438 * 16 15 14 39 39 H 1.08997 * 109.46936 * 245.00031 * 17 16 15 40 40 H 1.08997 * 109.46556 * 4.99984 * 17 16 15 41 41 H 0.96995 * 120.00152 * 0.02562 * 18 17 16 42 42 H 1.08997 * 109.46962 * 300.00304 * 23 21 19 43 43 H 1.08997 * 109.46818 * 60.00433 * 23 21 19 44 44 H 1.09004 * 109.47049 * 179.97438 * 24 23 21 45 45 H 1.08997 * 109.47531 * 299.99807 * 24 23 21 46 46 H 1.08997 * 109.47260 * 59.99255 * 25 24 23 47 47 H 1.08996 * 109.47182 * 180.02562 * 25 24 23 48 48 H 1.08988 * 109.47307 * 180.02562 * 29 26 25 49 49 H 1.09001 * 109.46503 * 59.99578 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2036 -0.0011 10 6 4.0536 -2.3707 -0.0021 11 8 3.4471 -3.4211 -0.0031 12 6 5.5606 -2.3708 -0.0021 13 7 6.0502 -3.7559 -0.0040 14 6 7.5187 -3.7951 -0.0034 15 6 7.9828 -5.2288 -0.0060 16 6 8.8040 -5.6498 -0.9357 17 6 9.2687 -7.0835 -0.9379 18 7 8.9701 -7.6915 -2.2369 19 6 9.2991 -8.9774 -2.4705 20 8 9.8418 -9.6314 -1.6052 21 6 8.9915 -9.6032 -3.8066 22 1 7.9166 -9.5696 -3.9846 23 6 9.4633 -11.0586 -3.8088 24 6 9.1516 -11.6936 -5.1655 25 6 9.8766 -10.9207 -6.2691 26 6 9.4048 -9.4653 -6.2668 27 1 9.9210 -8.9147 -7.0532 28 9 8.0254 -9.4218 -6.4961 29 6 9.7165 -8.8302 -4.9101 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3635 -0.0007 32 1 5.9241 -1.8578 0.8883 33 1 5.9240 -1.8562 -0.8916 34 1 5.6747 -4.2711 -0.7861 35 1 7.8960 -3.2899 -0.8926 36 1 7.8952 -3.2925 0.8874 37 1 7.6385 -5.9093 0.7588 38 1 9.1482 -4.9695 -1.7007 39 1 10.3434 -7.1174 -0.7592 40 1 8.7520 -7.6340 -0.1518 41 1 8.5364 -7.1684 -2.9291 42 1 10.5381 -11.0924 -3.6306 43 1 8.9470 -11.6091 -3.0224 44 1 9.4881 -12.7304 -5.1673 45 1 8.0769 -11.6598 -5.3442 46 1 10.9513 -10.9545 -6.0904 47 1 9.6542 -11.3729 -7.2356 48 1 9.3800 -7.7935 -4.9084 49 1 10.7912 -8.8641 -4.7315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754120116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:36 Heat of formation + Delta-G solvation = -122.703076 kcal Electronic energy + Delta-G solvation = -28273.191124 eV Core-core repulsion = 23956.021844 eV Total energy + Delta-G solvation = -4317.169279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.09725 -40.41769 -38.54743 -37.68356 -36.78946 -35.33311 -33.98464 -33.06849 -31.72623 -31.60158 -30.86061 -28.62299 -26.36365 -24.55715 -23.71190 -23.14809 -22.53478 -21.00242 -20.24820 -19.80061 -19.35408 -18.36601 -17.88314 -16.61941 -16.49076 -16.27618 -15.89421 -15.79869 -15.59573 -15.43831 -15.09866 -14.82450 -14.41572 -14.29222 -13.94335 -13.92754 -13.78778 -13.44228 -13.07432 -13.00278 -12.92241 -12.81637 -12.53683 -12.29416 -12.06632 -12.05243 -12.00005 -11.71114 -11.65983 -11.29123 -11.24140 -11.17074 -10.98370 -10.61789 -10.61302 -10.12502 -9.99207 -9.63629 -9.59074 -9.24923 -8.63456 -8.23563 -8.17958 -6.32540 -3.84118 1.72758 2.30669 2.99556 3.01147 3.04939 3.13627 3.71700 3.90901 3.93714 4.07486 4.09777 4.11091 4.24292 4.50187 4.51896 4.57102 4.61884 4.74650 4.78420 4.86395 4.87478 4.93459 5.02545 5.14589 5.19415 5.29565 5.30659 5.35285 5.42889 5.46091 5.49826 5.55624 5.59824 5.62154 5.65012 5.76786 5.77208 5.90250 5.91593 6.04603 6.35140 6.43796 7.01755 7.15758 7.51295 7.56577 7.89027 8.12882 8.58001 8.93358 9.40644 9.80631 10.80548 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.001562 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.120605 B =17923.305021 C =18923.163480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.666 5.666 14 C 0.083 3.917 15 C -0.109 4.109 16 C -0.191 4.191 17 C 0.152 3.848 18 N -0.726 5.726 19 C 0.518 3.482 20 O -0.540 6.540 21 C -0.108 4.108 22 H 0.105 0.895 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.148 4.148 26 C 0.093 3.907 27 H 0.087 0.913 28 F -0.210 7.210 29 C -0.137 4.137 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.352 0.648 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.302 -15.752 -12.018 32.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.046 4.046 15 C -0.128 4.128 16 C -0.210 4.210 17 C 0.029 3.971 18 N -0.378 5.378 19 C 0.304 3.696 20 O -0.416 6.416 21 C -0.129 4.129 22 H 0.123 0.877 23 C -0.138 4.138 24 C -0.160 4.160 25 C -0.186 4.186 26 C 0.057 3.943 27 H 0.105 0.895 28 F -0.191 7.191 29 C -0.175 4.175 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.172 0.828 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.237 0.763 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 25.978 -16.878 -10.695 32.773 hybrid contribution 0.458 2.159 -1.173 2.500 sum 26.437 -14.719 -11.868 32.502 Atomic orbital electron populations 1.69626 1.05646 1.27509 1.49276 1.25046 0.95503 0.97990 0.97633 0.86661 0.79802 0.84023 0.78834 1.19670 1.20143 1.19481 1.19440 0.79231 0.96660 1.48123 0.86268 1.42204 1.07545 1.06137 1.67060 1.19691 0.88161 0.84593 0.84100 1.90573 1.69404 1.30939 1.53681 1.21720 0.95148 0.90249 1.01360 1.60013 1.05376 1.12901 1.51569 1.21077 0.88906 0.93652 1.00969 1.22997 0.94509 0.97287 0.98034 1.22816 1.01333 0.96112 1.00787 1.20311 1.00797 0.90535 0.85419 1.46063 1.62433 1.12477 1.16804 1.20602 0.78016 0.81501 0.89476 1.90710 1.42244 1.61815 1.46848 1.21334 1.02967 0.96801 0.91841 0.87708 1.21370 1.02304 0.92786 0.97329 1.21544 1.01292 0.99361 0.93775 1.22168 1.01537 0.94366 1.00486 1.21535 0.77328 0.97851 0.97561 0.89543 1.92828 1.32764 1.97631 1.95853 1.22141 1.02181 0.99858 0.93358 0.91597 0.79685 0.89360 0.93709 0.82798 0.94936 0.89903 0.86163 0.86795 0.90849 0.90903 0.76301 0.91024 0.90719 0.90984 0.91100 0.90005 0.90593 0.90191 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 3 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.64 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 10 C 0.45 10.12 7.82 -10.99 -0.09 10.03 16 11 O -0.56 -15.16 15.78 5.54 0.09 -15.07 16 12 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 13 N -0.67 -9.98 6.11 -116.34 -0.71 -10.69 16 14 C 0.08 0.89 6.13 -4.98 -0.03 0.86 16 15 C -0.11 -1.04 9.38 -36.03 -0.34 -1.38 16 16 C -0.19 -1.52 9.24 -36.02 -0.33 -1.85 16 17 C 0.15 1.30 6.11 -5.19 -0.03 1.27 16 18 N -0.73 -5.75 5.44 -61.47 -0.33 -6.09 16 19 C 0.52 4.91 7.15 -10.98 -0.08 4.83 16 20 O -0.54 -7.15 15.98 5.55 0.09 -7.06 16 21 C -0.11 -0.76 2.40 -91.77 -0.22 -0.98 16 22 H 0.10 0.75 7.80 -51.93 -0.41 0.35 16 23 C -0.10 -0.70 4.49 -26.73 -0.12 -0.82 16 24 C -0.12 -0.67 5.80 -26.73 -0.16 -0.83 16 25 C -0.15 -0.66 5.72 -26.73 -0.15 -0.81 16 26 C 0.09 0.47 4.12 -26.73 -0.11 0.36 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 F -0.21 -1.69 16.05 2.25 0.04 -1.65 16 29 C -0.14 -0.69 4.89 -26.73 -0.13 -0.82 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.35 5.51 8.42 -39.29 -0.33 5.18 16 35 H 0.03 0.31 7.79 -51.93 -0.40 -0.09 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.12 1.23 7.84 -52.49 -0.41 0.82 16 38 H 0.11 0.78 7.84 -52.48 -0.41 0.36 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 41 H 0.40 2.41 7.88 -40.82 -0.32 2.09 16 42 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.45 7.80 -51.93 -0.41 0.04 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.34 7.56 -51.94 -0.39 -0.05 16 49 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 403.64 15.07 6.08 6.08 Total: -1.00 -34.96 403.64 -8.74 -43.70 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -7.92 Total: 12.35 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.07 Total: 2.84 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.33 Total: -55.69 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.18 Total: -22.13 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.96 -8.74 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.003 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds