Wall clock time and date at job start Wed Apr 1 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86795 * 120.00368 * 2 1 4 4 H 1.48498 * 109.47527 * 270.00103 * 3 2 1 5 5 H 1.48505 * 109.46906 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.47065 * 150.00001 * 3 2 1 7 7 C 1.38956 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00420 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99812 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.30993 * 120.00196 * 125.00091 * 15 14 13 17 17 C 1.50710 * 120.00228 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.47015 * 124.99572 * 17 16 15 19 19 C 1.34773 * 119.99723 * 179.97438 * 18 17 16 20 20 O 1.21285 * 120.00104 * 0.02562 * 19 18 17 21 21 C 1.50705 * 120.00124 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.46803 * 300.00865 * 21 19 18 23 23 C 1.53000 * 109.47128 * 180.02562 * 21 19 18 24 24 C 1.53001 * 109.46718 * 180.02562 * 23 21 19 25 25 C 1.53003 * 109.47381 * 60.00386 * 24 23 21 26 26 C 1.53004 * 109.46785 * 299.99870 * 25 24 23 27 27 H 1.09000 * 109.47386 * 180.02562 * 26 25 24 28 28 F 1.39905 * 109.47220 * 299.99934 * 26 25 24 29 29 C 1.53001 * 109.47563 * 59.99770 * 26 25 24 30 30 H 0.97004 * 119.99652 * 359.97438 * 1 2 3 31 31 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 33 33 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 34 34 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 35 35 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 36 36 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 37 37 H 1.08001 * 119.99932 * 304.99608 * 15 14 13 38 38 H 1.08005 * 120.00295 * 359.97438 * 16 15 14 39 39 H 1.08997 * 109.46936 * 245.00031 * 17 16 15 40 40 H 1.08997 * 109.46556 * 4.99984 * 17 16 15 41 41 H 0.96995 * 120.00152 * 0.02562 * 18 17 16 42 42 H 1.08997 * 109.46962 * 300.00304 * 23 21 19 43 43 H 1.08997 * 109.46818 * 60.00433 * 23 21 19 44 44 H 1.09004 * 109.47049 * 179.97438 * 24 23 21 45 45 H 1.08997 * 109.47531 * 299.99807 * 24 23 21 46 46 H 1.08997 * 109.47260 * 59.99255 * 25 24 23 47 47 H 1.08996 * 109.47182 * 180.02562 * 25 24 23 48 48 H 1.08988 * 109.47307 * 180.02562 * 29 26 25 49 49 H 1.09001 * 109.46503 * 59.99578 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2036 -0.0011 10 6 4.0536 -2.3707 -0.0021 11 8 3.4471 -3.4211 -0.0031 12 6 5.5606 -2.3708 -0.0021 13 7 6.0502 -3.7559 -0.0040 14 6 7.5187 -3.7951 -0.0034 15 6 7.9828 -5.2288 -0.0060 16 6 8.8040 -5.6498 -0.9357 17 6 9.2687 -7.0835 -0.9379 18 7 8.9701 -7.6915 -2.2369 19 6 9.2991 -8.9774 -2.4705 20 8 9.8418 -9.6314 -1.6052 21 6 8.9915 -9.6032 -3.8066 22 1 7.9166 -9.5696 -3.9846 23 6 9.4633 -11.0586 -3.8088 24 6 9.1516 -11.6936 -5.1655 25 6 9.8766 -10.9207 -6.2691 26 6 9.4048 -9.4653 -6.2668 27 1 9.9210 -8.9147 -7.0532 28 9 8.0254 -9.4218 -6.4961 29 6 9.7165 -8.8302 -4.9101 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3635 -0.0007 32 1 5.9241 -1.8578 0.8883 33 1 5.9240 -1.8562 -0.8916 34 1 5.6747 -4.2711 -0.7861 35 1 7.8960 -3.2899 -0.8926 36 1 7.8952 -3.2925 0.8874 37 1 7.6385 -5.9093 0.7588 38 1 9.1482 -4.9695 -1.7007 39 1 10.3434 -7.1174 -0.7592 40 1 8.7520 -7.6340 -0.1518 41 1 8.5364 -7.1684 -2.9291 42 1 10.5381 -11.0924 -3.6306 43 1 8.9470 -11.6091 -3.0224 44 1 9.4881 -12.7304 -5.1673 45 1 8.0769 -11.6598 -5.3442 46 1 10.9513 -10.9545 -6.0904 47 1 9.6542 -11.3729 -7.2356 48 1 9.3800 -7.7935 -4.9084 49 1 10.7912 -8.8641 -4.7315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754120116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:35 Heat of formation + Delta-G solvation = -149.454813 kcal Electronic energy + Delta-G solvation = -28274.351166 eV Core-core repulsion = 23956.021844 eV Total energy + Delta-G solvation = -4318.329322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.59282 -41.14252 -40.30825 -38.26990 -37.69657 -36.36643 -35.86250 -33.99349 -33.70717 -32.20111 -31.31826 -29.69342 -27.66770 -25.85202 -24.61269 -23.72131 -23.34914 -21.67949 -21.33771 -20.80468 -20.47164 -20.14317 -18.50093 -17.89525 -17.30002 -17.15269 -16.94240 -16.63455 -16.44146 -16.33078 -15.99033 -15.81426 -15.54052 -15.37900 -15.03710 -14.87575 -14.79309 -14.47014 -14.33677 -14.14033 -13.97585 -13.54746 -13.44128 -13.28029 -13.13178 -12.96158 -12.83102 -12.68673 -12.51935 -12.41193 -12.17836 -12.05150 -11.96725 -11.73341 -11.52798 -11.51197 -11.04444 -10.82548 -10.48140 -10.35511 -10.25226 -9.98116 -9.33690 -8.41289 -6.02624 1.01098 1.31038 1.36320 1.45729 1.55701 1.95589 2.23670 2.32250 2.78420 3.15232 3.43197 3.45276 3.51607 3.64382 3.77561 3.87523 4.04540 4.07444 4.10143 4.14208 4.16030 4.34658 4.36232 4.38711 4.42768 4.50093 4.51280 4.58344 4.60818 4.67928 4.80415 4.85472 4.88674 5.00560 5.04565 5.13404 5.19539 5.26898 5.33023 5.44873 5.52046 5.63578 5.71215 5.90450 6.05020 6.39146 6.48748 6.59676 6.87943 7.17892 7.39564 7.96507 8.76414 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.001562 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.120605 B =17923.305021 C =18923.163480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.617 6.617 12 C 0.063 3.937 13 N -0.690 5.690 14 C 0.089 3.911 15 C -0.128 4.128 16 C -0.164 4.164 17 C 0.151 3.849 18 N -0.716 5.716 19 C 0.516 3.484 20 O -0.582 6.582 21 C -0.104 4.104 22 H 0.102 0.898 23 C -0.098 4.098 24 C -0.119 4.119 25 C -0.146 4.146 26 C 0.088 3.912 27 H 0.110 0.890 28 F -0.229 7.229 29 C -0.133 4.133 30 H 0.279 0.721 31 H 0.391 0.609 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.345 0.655 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.414 0.586 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.989 -13.287 -13.406 35.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.069 4.069 13 N -0.322 5.322 14 C -0.039 4.039 15 C -0.147 4.147 16 C -0.183 4.183 17 C 0.028 3.972 18 N -0.368 5.368 19 C 0.303 3.697 20 O -0.462 6.462 21 C -0.125 4.125 22 H 0.120 0.880 23 C -0.136 4.136 24 C -0.157 4.157 25 C -0.184 4.184 26 C 0.052 3.948 27 H 0.128 0.872 28 F -0.210 7.210 29 C -0.171 4.171 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.133 0.867 33 H 0.100 0.900 34 H 0.163 0.837 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.155 0.845 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.251 0.749 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 29.692 -14.398 -12.096 35.146 hybrid contribution -0.721 1.214 -0.730 1.590 sum 28.971 -13.183 -12.826 34.317 Atomic orbital electron populations 1.69815 1.08219 1.29283 1.50212 1.26159 0.96494 1.02836 0.95981 0.85333 0.79498 0.76491 0.79986 1.18004 1.20127 1.15306 1.19013 0.81602 0.94911 1.50503 0.92843 1.42022 1.05759 1.07642 1.67728 1.21060 0.91159 0.83271 0.81109 1.90551 1.71481 1.32908 1.55190 1.21642 0.89307 0.91727 1.04267 1.60000 1.08217 1.12261 1.51731 1.21107 0.86040 0.94329 1.02432 1.22859 0.96011 0.97031 0.98804 1.22838 0.99700 0.95593 1.00169 1.20272 1.00757 0.90926 0.85249 1.45998 1.61761 1.12191 1.16845 1.21048 0.77178 0.81604 0.89865 1.90690 1.44367 1.62849 1.48298 1.21317 1.03044 0.96902 0.91219 0.88020 1.21332 1.01773 0.92844 0.97675 1.21515 1.00851 0.99995 0.93338 1.22185 1.02203 0.93849 1.00136 1.21773 0.76362 0.98525 0.98129 0.87218 1.92794 1.34472 1.97728 1.95972 1.22155 1.02484 1.00046 0.92401 0.91138 0.77365 0.86691 0.90040 0.83661 0.92575 0.89051 0.87693 0.84481 0.90592 0.92708 0.74923 0.91327 0.92686 0.90215 0.92188 0.88506 0.89942 0.89059 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.96 21.67 0.30 -56.07 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 3 Si 0.97 38.21 27.74 68.60 1.90 40.11 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 5 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 7 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 8 H 0.05 3.75 7.39 -2.92 -0.02 3.73 16 9 N -0.59 -27.49 5.09 -306.99 -1.56 -29.05 16 10 C 0.45 19.91 7.82 87.66 0.69 20.59 16 11 O -0.62 -34.34 15.78 -3.08 -0.05 -34.39 16 12 C 0.06 1.81 6.17 85.55 0.53 2.34 16 13 N -0.69 -19.28 6.11 -521.98 -3.19 -22.47 16 14 C 0.09 1.62 6.13 85.56 0.52 2.14 16 15 C -0.13 -2.22 9.38 25.65 0.24 -1.98 16 16 C -0.16 -2.20 9.24 25.66 0.24 -1.96 16 17 C 0.15 2.43 6.11 85.64 0.52 2.95 16 18 N -0.72 -10.55 5.44 -466.78 -2.54 -13.09 16 19 C 0.52 9.67 7.15 87.66 0.63 10.30 16 20 O -0.58 -15.81 15.98 -3.05 -0.05 -15.86 16 21 C -0.10 -1.40 2.40 -11.54 -0.03 -1.43 16 22 H 0.10 1.45 7.80 -2.39 -0.02 1.43 16 23 C -0.10 -1.39 4.49 30.59 0.14 -1.25 16 24 C -0.12 -1.25 5.80 30.60 0.18 -1.08 16 25 C -0.15 -1.03 5.72 30.60 0.17 -0.86 16 26 C 0.09 0.71 4.12 30.60 0.13 0.84 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 F -0.23 -3.39 16.05 44.97 0.72 -2.67 16 29 C -0.13 -1.07 4.89 30.60 0.15 -0.92 16 30 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.39 14.84 5.76 -92.70 -0.53 14.30 16 32 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.34 10.43 8.42 -89.69 -0.76 9.68 16 35 H 0.06 0.79 7.79 -2.39 -0.02 0.77 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 2.14 7.84 -2.91 -0.02 2.12 16 38 H 0.14 1.28 7.84 -2.91 -0.02 1.26 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.10 7.79 -2.39 -0.02 1.08 16 41 H 0.41 4.16 7.88 -92.71 -0.73 3.43 16 42 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 43 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 44 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 0.76 7.80 -2.39 -0.02 0.74 16 46 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.09 0.54 7.56 -2.39 -0.02 0.52 16 49 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -83.10 403.64 -0.14 -83.24 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -1.10 Total: 39.54 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.42 Total: 10.70 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -6.99 Total: -120.68 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.10 Total: -50.25 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.72 Total: -2.67 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.90 Total: 40.11 kcal Total: -83.10 -0.14 -83.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.211 kcal (2) G-P(sol) polarization free energy of solvation -83.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds