Wall clock time and date at job start Wed Apr 1 2020 01:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46725 * 299.99797 * 3 2 1 6 6 H 1.48497 * 109.46779 * 59.99468 * 3 2 1 7 7 C 1.38948 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99619 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00603 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00269 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00445 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99983 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47276 * 179.97438 * 12 10 9 14 14 C 1.46907 * 111.00101 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46818 * 179.97438 * 14 13 12 16 16 C 1.31008 * 119.99730 * 127.09482 * 15 14 13 17 17 C 1.50695 * 119.99750 * 7.83491 * 16 15 14 18 18 N 1.46504 * 109.47090 * 127.05291 * 17 16 15 19 19 C 1.34774 * 119.99999 * 180.02562 * 18 17 16 20 20 O 1.21276 * 120.00441 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99928 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.47126 * 59.99725 * 21 19 18 23 23 C 1.52996 * 109.47301 * 299.99747 * 21 19 18 24 24 C 1.52997 * 109.47462 * 180.02562 * 23 21 19 25 25 C 1.52997 * 109.47190 * 59.99398 * 24 23 21 26 26 C 1.52996 * 109.47410 * 300.00634 * 25 24 23 27 27 H 1.09001 * 109.47013 * 299.99517 * 26 25 24 28 28 F 1.39906 * 109.46911 * 179.97438 * 26 25 24 29 29 C 1.52997 * 109.47462 * 59.99532 * 26 25 24 30 30 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99546 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47333 * 59.99549 * 12 10 9 33 33 H 1.09004 * 109.46975 * 299.99823 * 12 10 9 34 34 H 1.00902 * 111.00036 * 303.94686 * 13 12 10 35 35 H 1.08999 * 109.47319 * 59.99669 * 14 13 12 36 36 H 1.09004 * 109.46834 * 299.99488 * 14 13 12 37 37 H 1.07996 * 120.00408 * 307.36872 * 15 14 13 38 38 H 1.07997 * 120.00047 * 187.83675 * 16 15 14 39 39 H 1.09003 * 109.46906 * 247.04900 * 17 16 15 40 40 H 1.08997 * 109.47951 * 7.05133 * 17 16 15 41 41 H 0.96997 * 119.99821 * 359.97438 * 18 17 16 42 42 H 1.09001 * 109.47013 * 300.00047 * 23 21 19 43 43 H 1.09008 * 109.47038 * 59.99450 * 23 21 19 44 44 H 1.09006 * 109.46737 * 299.99610 * 24 23 21 45 45 H 1.09003 * 109.47357 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.47114 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46639 * 60.00380 * 25 24 23 48 48 H 1.08994 * 109.47146 * 180.02562 * 29 26 25 49 49 H 1.09001 * 109.47019 * 59.99989 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2709 0.0026 15 6 2.5076 -8.3897 0.0025 16 6 2.4383 -9.3345 0.9075 17 6 1.2536 -9.4028 1.8363 18 7 0.6707 -10.7459 1.7863 19 6 -0.4068 -11.0414 2.5401 20 8 -0.8936 -10.1955 3.2600 21 6 -1.0067 -12.4229 2.4883 22 1 -0.2605 -13.1549 2.7972 23 6 -1.4601 -12.7287 1.0594 24 6 -2.0698 -14.1310 1.0069 25 6 -3.2729 -14.1997 1.9496 26 6 -2.8195 -13.8938 3.3784 27 1 -2.0736 -14.6261 3.6875 28 9 -3.9199 -13.9560 4.2402 29 6 -2.2098 -12.4915 3.4309 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6174 -4.9213 -0.8880 33 1 0.6168 -4.9201 0.8920 34 1 2.8331 -5.9129 -0.7788 35 1 0.8734 -7.3455 -0.8875 36 1 0.8729 -7.3452 0.8925 37 1 3.2907 -8.4104 -0.7408 38 1 3.2303 -10.0644 0.9878 39 1 1.5769 -9.1847 2.8541 40 1 0.5071 -8.6711 1.5275 41 1 1.0598 -11.4224 1.2103 42 1 -2.2064 -11.9967 0.7505 43 1 -0.6030 -12.6793 0.3878 44 1 -1.3238 -14.8633 1.3160 45 1 -2.3932 -14.3488 -0.0110 46 1 -3.7075 -15.1986 1.9118 47 1 -4.0188 -13.4674 1.6405 48 1 -1.8864 -12.2738 4.4488 49 1 -2.9557 -11.7592 3.1218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754120117.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:39 Heat of formation + Delta-G solvation = -123.159923 kcal Electronic energy + Delta-G solvation = -28330.439775 eV Core-core repulsion = 24013.250685 eV Total energy + Delta-G solvation = -4317.189090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.01691 -40.52576 -38.38889 -37.94096 -36.95489 -35.10662 -33.90585 -32.96479 -31.64923 -31.20093 -30.68110 -28.04035 -26.35536 -24.80174 -23.84232 -23.16538 -23.08555 -21.07889 -20.40783 -19.54140 -18.90778 -17.89258 -17.50308 -16.78671 -16.44256 -16.19953 -16.00227 -15.54405 -15.45794 -15.37491 -15.11434 -14.89512 -14.61050 -14.34404 -14.05973 -13.77918 -13.68688 -13.62625 -13.35307 -13.04562 -12.90411 -12.71598 -12.47631 -12.25768 -11.86652 -11.79781 -11.69993 -11.54714 -11.49179 -11.33241 -11.05757 -11.05284 -10.86673 -10.78560 -10.33547 -10.21877 -10.12815 -9.60736 -9.51398 -9.17168 -8.46338 -8.05445 -7.95240 -6.40948 -3.81849 1.77198 2.31408 2.95952 3.17206 3.27718 3.35111 3.90933 3.91285 3.97645 3.98565 4.13721 4.30842 4.38328 4.42017 4.45365 4.54809 4.63658 4.71487 4.77094 4.81557 4.93581 4.97803 5.09644 5.16449 5.26003 5.31230 5.31985 5.35671 5.48886 5.49541 5.53207 5.54799 5.59962 5.65672 5.70738 5.79992 5.82369 5.97742 6.07704 6.26008 6.32955 6.55882 7.15531 7.16847 7.56233 7.62180 7.90530 8.07146 8.61833 9.18596 9.54965 10.06209 10.76872 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.001493 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.249766 B =18749.823804 C =19606.023020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.069 3.931 15 C -0.110 4.110 16 C -0.184 4.184 17 C 0.139 3.861 18 N -0.724 5.724 19 C 0.515 3.485 20 O -0.534 6.534 21 C -0.102 4.102 22 H 0.101 0.899 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.149 4.149 26 C 0.093 3.907 27 H 0.083 0.917 28 F -0.213 7.213 29 C -0.127 4.127 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.400 0.600 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -32.755 0.332 33.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.295 5.295 14 C -0.059 4.059 15 C -0.129 4.129 16 C -0.203 4.203 17 C 0.017 3.983 18 N -0.376 5.376 19 C 0.300 3.700 20 O -0.410 6.410 21 C -0.124 4.124 22 H 0.119 0.881 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.187 4.187 26 C 0.056 3.944 27 H 0.101 0.899 28 F -0.193 7.193 29 C -0.165 4.165 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.234 0.766 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.433 -31.925 1.569 32.270 hybrid contribution -0.316 0.543 -1.132 1.295 sum -4.750 -31.383 0.436 31.743 Atomic orbital electron populations 1.69622 1.05950 1.28071 1.50635 1.25274 0.95643 0.99751 0.97323 0.85789 0.79700 0.81094 0.77693 1.19208 1.20781 1.20731 1.19763 0.93418 0.82218 1.47498 0.87840 1.41867 1.09228 1.04603 1.64312 1.19777 0.88371 0.84696 0.84516 1.90521 1.13744 1.87061 1.55431 1.21700 0.94340 0.90923 1.01334 1.60106 1.18717 0.99374 1.51322 1.21289 0.94909 0.88428 1.01311 1.22857 0.98914 0.94289 0.96865 1.22656 0.98547 1.01835 0.97290 1.20521 0.94085 0.83824 0.99901 1.46009 1.31288 1.14426 1.45900 1.20522 0.79991 0.89874 0.79578 1.90755 1.60980 1.49607 1.39610 1.21250 0.98477 0.95024 0.97646 0.88114 1.21613 1.01617 0.97910 0.94202 1.21463 0.97096 0.96661 0.99979 1.22175 0.99254 1.03335 0.93895 1.21565 0.85665 0.98437 0.88698 0.89919 1.92829 1.56704 1.97614 1.72201 1.21933 0.97382 0.96282 1.00950 0.91911 0.77434 0.93794 0.89478 0.83118 0.94495 0.89662 0.86545 0.86434 0.90646 0.89946 0.76593 0.90795 0.90800 0.91235 0.90589 0.90576 0.90466 0.89847 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 9 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 10 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 11 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.66 -10.72 6.12 -116.33 -0.71 -11.43 16 14 C 0.07 0.83 5.77 -4.97 -0.03 0.81 16 15 C -0.11 -1.08 9.77 -36.03 -0.35 -1.43 16 16 C -0.18 -1.54 9.63 -36.03 -0.35 -1.89 16 17 C 0.14 1.31 5.76 -5.19 -0.03 1.28 16 18 N -0.72 -5.28 5.44 -61.47 -0.33 -5.62 16 19 C 0.51 4.70 7.15 -10.99 -0.08 4.62 16 20 O -0.53 -7.43 15.98 5.56 0.09 -7.34 16 21 C -0.10 -0.58 2.53 -91.77 -0.23 -0.81 16 22 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 23 C -0.12 -0.46 5.10 -26.73 -0.14 -0.60 16 24 C -0.11 -0.35 5.92 -26.73 -0.16 -0.51 16 25 C -0.15 -0.68 5.66 -26.73 -0.15 -0.83 16 26 C 0.09 0.56 3.88 -26.73 -0.10 0.45 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 F -0.21 -1.95 17.08 2.25 0.04 -1.91 16 29 C -0.13 -0.92 4.23 -26.73 -0.11 -1.04 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.35 5.70 8.42 -39.29 -0.33 5.37 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 1.05 5.31 -51.93 -0.28 0.77 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.90 5.31 -51.93 -0.28 0.62 16 41 H 0.40 1.70 7.88 -40.82 -0.32 1.38 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.20 7.56 -51.92 -0.39 -0.20 16 44 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 49 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -34.74 403.88 -8.96 -43.69 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.77 Total: 11.59 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.09 Total: 3.30 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.38 Total: -55.67 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.18 Total: -23.28 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.74 -8.96 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120117.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.465 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds