Wall clock time and date at job start Wed Apr 1 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46725 * 299.99797 * 3 2 1 6 6 H 1.48497 * 109.46779 * 59.99468 * 3 2 1 7 7 C 1.38948 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99619 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00603 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00269 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00445 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99983 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47276 * 179.97438 * 12 10 9 14 14 C 1.46907 * 111.00101 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46818 * 179.97438 * 14 13 12 16 16 C 1.31008 * 119.99730 * 127.09482 * 15 14 13 17 17 C 1.50695 * 119.99750 * 7.83491 * 16 15 14 18 18 N 1.46504 * 109.47090 * 127.05291 * 17 16 15 19 19 C 1.34774 * 119.99999 * 180.02562 * 18 17 16 20 20 O 1.21276 * 120.00441 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99928 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.47126 * 59.99725 * 21 19 18 23 23 C 1.52996 * 109.47301 * 299.99747 * 21 19 18 24 24 C 1.52997 * 109.47462 * 180.02562 * 23 21 19 25 25 C 1.52997 * 109.47190 * 59.99398 * 24 23 21 26 26 C 1.52996 * 109.47410 * 300.00634 * 25 24 23 27 27 H 1.09001 * 109.47013 * 299.99517 * 26 25 24 28 28 F 1.39906 * 109.46911 * 179.97438 * 26 25 24 29 29 C 1.52997 * 109.47462 * 59.99532 * 26 25 24 30 30 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99546 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47333 * 59.99549 * 12 10 9 33 33 H 1.09004 * 109.46975 * 299.99823 * 12 10 9 34 34 H 1.00902 * 111.00036 * 303.94686 * 13 12 10 35 35 H 1.08999 * 109.47319 * 59.99669 * 14 13 12 36 36 H 1.09004 * 109.46834 * 299.99488 * 14 13 12 37 37 H 1.07996 * 120.00408 * 307.36872 * 15 14 13 38 38 H 1.07997 * 120.00047 * 187.83675 * 16 15 14 39 39 H 1.09003 * 109.46906 * 247.04900 * 17 16 15 40 40 H 1.08997 * 109.47951 * 7.05133 * 17 16 15 41 41 H 0.96997 * 119.99821 * 359.97438 * 18 17 16 42 42 H 1.09001 * 109.47013 * 300.00047 * 23 21 19 43 43 H 1.09008 * 109.47038 * 59.99450 * 23 21 19 44 44 H 1.09006 * 109.46737 * 299.99610 * 24 23 21 45 45 H 1.09003 * 109.47357 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.47114 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46639 * 60.00380 * 25 24 23 48 48 H 1.08994 * 109.47146 * 180.02562 * 29 26 25 49 49 H 1.09001 * 109.47019 * 59.99989 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2709 0.0026 15 6 2.5076 -8.3897 0.0025 16 6 2.4383 -9.3345 0.9075 17 6 1.2536 -9.4028 1.8363 18 7 0.6707 -10.7459 1.7863 19 6 -0.4068 -11.0414 2.5401 20 8 -0.8936 -10.1955 3.2600 21 6 -1.0067 -12.4229 2.4883 22 1 -0.2605 -13.1549 2.7972 23 6 -1.4601 -12.7287 1.0594 24 6 -2.0698 -14.1310 1.0069 25 6 -3.2729 -14.1997 1.9496 26 6 -2.8195 -13.8938 3.3784 27 1 -2.0736 -14.6261 3.6875 28 9 -3.9199 -13.9560 4.2402 29 6 -2.2098 -12.4915 3.4309 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6174 -4.9213 -0.8880 33 1 0.6168 -4.9201 0.8920 34 1 2.8331 -5.9129 -0.7788 35 1 0.8734 -7.3455 -0.8875 36 1 0.8729 -7.3452 0.8925 37 1 3.2907 -8.4104 -0.7408 38 1 3.2303 -10.0644 0.9878 39 1 1.5769 -9.1847 2.8541 40 1 0.5071 -8.6711 1.5275 41 1 1.0598 -11.4224 1.2103 42 1 -2.2064 -11.9967 0.7505 43 1 -0.6030 -12.6793 0.3878 44 1 -1.3238 -14.8633 1.3160 45 1 -2.3932 -14.3488 -0.0110 46 1 -3.7075 -15.1986 1.9118 47 1 -4.0188 -13.4674 1.6405 48 1 -1.8864 -12.2738 4.4488 49 1 -2.9557 -11.7592 3.1218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754120117.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:38 Heat of formation + Delta-G solvation = -148.936349 kcal Electronic energy + Delta-G solvation = -28331.557524 eV Core-core repulsion = 24013.250685 eV Total energy + Delta-G solvation = -4318.306839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.63104 -41.20964 -40.19715 -38.55891 -37.89794 -36.28803 -35.77169 -33.94267 -33.26066 -32.11806 -31.13750 -29.29916 -27.45337 -26.34894 -24.53668 -24.36799 -23.48758 -21.64090 -21.22103 -20.94202 -20.06734 -19.71069 -18.29844 -17.80015 -17.36653 -17.07758 -16.87877 -16.70979 -16.46633 -16.21544 -16.02340 -15.89520 -15.78579 -15.38904 -15.29192 -15.11944 -14.60385 -14.46652 -14.31774 -14.01157 -13.82645 -13.54143 -13.45760 -13.38382 -13.21584 -12.97516 -12.75959 -12.71619 -12.42090 -12.27714 -12.11750 -12.07436 -11.71613 -11.64713 -11.55753 -11.53192 -11.24371 -10.82932 -10.39215 -10.35230 -10.04067 -9.96667 -9.28943 -8.48464 -5.97701 1.03262 1.35950 1.41255 1.55935 1.60597 2.02144 2.27421 2.31404 2.99691 3.18608 3.47201 3.48531 3.56514 3.59064 3.73757 3.87913 3.97765 4.04828 4.06192 4.23120 4.25616 4.29996 4.30094 4.37395 4.42729 4.45987 4.52401 4.56324 4.58044 4.68968 4.77257 4.93625 4.97581 5.03457 5.09599 5.17926 5.19485 5.23450 5.36960 5.39469 5.44782 5.57424 5.79552 5.87223 6.06198 6.37976 6.56176 6.57480 7.10296 7.25619 7.53394 8.08242 8.69214 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.001493 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.249766 B =18749.823804 C =19606.023020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.996 3.004 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.064 3.936 13 N -0.678 5.678 14 C 0.071 3.929 15 C -0.126 4.126 16 C -0.161 4.161 17 C 0.138 3.862 18 N -0.707 5.707 19 C 0.510 3.490 20 O -0.590 6.590 21 C -0.092 4.092 22 H 0.134 0.866 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.148 4.148 26 C 0.089 3.911 27 H 0.109 0.891 28 F -0.234 7.234 29 C -0.127 4.127 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.347 0.653 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.419 0.581 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 -34.993 -0.787 35.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.311 5.311 14 C -0.057 4.057 15 C -0.145 4.145 16 C -0.180 4.180 17 C 0.014 3.986 18 N -0.360 5.360 19 C 0.297 3.703 20 O -0.471 6.471 21 C -0.113 4.113 22 H 0.152 0.848 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.186 4.186 26 C 0.053 3.947 27 H 0.127 0.873 28 F -0.215 7.215 29 C -0.165 4.165 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.166 0.834 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.257 0.743 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.743 -34.214 0.418 34.420 hybrid contribution -0.553 1.184 -0.742 1.502 sum -4.296 -33.030 -0.323 33.309 Atomic orbital electron populations 1.69684 1.06906 1.29300 1.50301 1.26085 0.96566 1.02536 0.96182 0.84833 0.78032 0.76896 0.78333 1.19687 1.19444 1.19695 1.19735 0.92770 0.84003 1.49959 0.90197 1.41945 1.09349 1.04761 1.64965 1.20827 0.88258 0.86118 0.82288 1.90485 1.15763 1.87949 1.56671 1.21542 0.94079 0.88272 1.02994 1.60097 1.19000 1.00454 1.51541 1.21315 0.95511 0.87174 1.01663 1.22828 0.99221 0.94143 0.98345 1.22762 0.98107 1.01717 0.95398 1.20394 0.94299 0.84612 0.99256 1.45837 1.30564 1.14060 1.45512 1.21205 0.79752 0.90725 0.78583 1.90734 1.62669 1.51564 1.42086 1.21256 0.98167 0.93330 0.98508 0.84840 1.21638 1.02088 0.98255 0.93076 1.21461 0.96666 0.96207 1.00144 1.22186 0.99902 1.03367 0.93105 1.21809 0.85510 0.97963 0.89406 0.87306 1.92785 1.57969 1.97643 1.73110 1.21880 0.97634 0.96675 1.00338 0.91269 0.76998 0.91344 0.88316 0.83381 0.93254 0.90157 0.85250 0.83633 0.92314 0.91666 0.74339 0.92646 0.88503 0.89048 0.89439 0.89583 0.91946 0.91715 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.10 5.29 -306.99 -1.62 -31.72 16 10 C 0.44 21.32 7.82 87.66 0.69 22.00 16 11 O -0.62 -35.05 15.78 -3.06 -0.05 -35.10 16 12 C 0.06 2.25 6.17 85.56 0.53 2.77 16 13 N -0.68 -21.53 6.12 -521.96 -3.19 -24.72 16 14 C 0.07 1.63 5.77 85.56 0.49 2.12 16 15 C -0.13 -2.22 9.77 25.64 0.25 -1.97 16 16 C -0.16 -2.30 9.63 25.64 0.25 -2.05 16 17 C 0.14 2.47 5.76 85.63 0.49 2.97 16 18 N -0.71 -9.08 5.44 -466.79 -2.54 -11.62 16 19 C 0.51 9.05 7.15 87.66 0.63 9.68 16 20 O -0.59 -17.24 15.98 -3.02 -0.05 -17.29 16 21 C -0.09 -0.88 2.53 -11.54 -0.03 -0.91 16 22 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 23 C -0.11 -0.63 5.10 30.59 0.16 -0.47 16 24 C -0.11 -0.30 5.92 30.59 0.18 -0.12 16 25 C -0.15 -1.11 5.66 30.59 0.17 -0.93 16 26 C 0.09 0.99 3.88 30.59 0.12 1.11 16 27 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 28 F -0.23 -4.35 17.08 44.97 0.77 -3.58 16 29 C -0.13 -1.88 4.23 30.59 0.13 -1.75 16 30 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 32 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 34 H 0.35 11.19 8.42 -89.69 -0.76 10.43 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.93 5.31 -2.38 -0.01 1.92 16 37 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.43 5.31 -2.39 -0.01 1.41 16 41 H 0.42 2.15 7.88 -92.71 -0.73 1.42 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.10 0.13 7.56 -2.38 -0.02 0.11 16 44 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 45 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 49 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -78.83 403.88 -0.27 -79.10 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -1.23 Total: 36.10 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.33 Total: 13.57 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -7.07 Total: -118.29 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.10 Total: -52.39 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.77 Total: -3.58 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -78.83 -0.27 -79.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120117.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.838 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds