Wall clock time and date at job start Wed Apr 1 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46887 * 299.99435 * 3 2 1 6 6 H 1.48505 * 109.46944 * 59.99643 * 3 2 1 7 7 C 1.38952 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99958 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00445 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47276 * 179.97438 * 12 10 9 14 14 C 1.46907 * 111.00101 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46818 * 179.97438 * 14 13 12 16 16 C 1.31008 * 119.99730 * 127.09482 * 15 14 13 17 17 C 1.50695 * 119.99750 * 7.83491 * 16 15 14 18 18 N 1.46504 * 109.47090 * 127.05291 * 17 16 15 19 19 C 1.34774 * 119.99999 * 180.02562 * 18 17 16 20 20 O 1.21280 * 120.00208 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99928 * 179.97438 * 19 18 17 22 22 H 1.08994 * 109.46985 * 299.99547 * 21 19 18 23 23 C 1.52997 * 109.47244 * 179.97438 * 21 19 18 24 24 C 1.52997 * 109.47190 * 179.97438 * 23 21 19 25 25 C 1.52998 * 109.46937 * 60.00656 * 24 23 21 26 26 C 1.53006 * 109.47057 * 299.99651 * 25 24 23 27 27 H 1.09001 * 109.47051 * 180.02562 * 26 25 24 28 28 F 1.39904 * 109.47218 * 300.00186 * 26 25 24 29 29 C 1.52997 * 109.46962 * 60.00364 * 26 25 24 30 30 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99857 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47333 * 59.99549 * 12 10 9 33 33 H 1.09004 * 109.46975 * 299.99823 * 12 10 9 34 34 H 1.00902 * 111.00036 * 303.94686 * 13 12 10 35 35 H 1.08999 * 109.47319 * 59.99669 * 14 13 12 36 36 H 1.09004 * 109.46834 * 299.99488 * 14 13 12 37 37 H 1.07996 * 120.00408 * 307.36872 * 15 14 13 38 38 H 1.07997 * 120.00047 * 187.83675 * 16 15 14 39 39 H 1.09003 * 109.46906 * 247.04900 * 17 16 15 40 40 H 1.09006 * 109.47729 * 7.05036 * 17 16 15 41 41 H 0.96997 * 119.99821 * 359.97438 * 18 17 16 42 42 H 1.08994 * 109.47405 * 300.00080 * 23 21 19 43 43 H 1.09001 * 109.46639 * 60.00216 * 23 21 19 44 44 H 1.08998 * 109.47454 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.47357 * 300.00407 * 24 23 21 46 46 H 1.08994 * 109.47409 * 59.99908 * 25 24 23 47 47 H 1.09003 * 109.46899 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.47454 * 180.02562 * 29 26 25 49 49 H 1.09001 * 109.47544 * 59.99200 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.4980 -7.2709 0.0006 15 6 2.5076 -8.3897 0.0007 16 6 2.4376 -9.3349 0.9052 17 6 1.2522 -9.4036 1.8331 18 7 0.6693 -10.7467 1.7821 19 6 -0.4087 -11.0425 2.5349 20 8 -0.8961 -10.1969 3.2548 21 6 -1.0086 -12.4240 2.4820 22 1 -1.3309 -12.6414 1.4637 23 6 -2.2121 -12.4938 3.4241 24 6 -2.8215 -13.8961 3.3699 25 6 -1.7745 -14.9242 3.8031 26 6 -0.5709 -14.8545 2.8610 27 1 0.1748 -15.5872 3.1694 28 9 -0.9850 -15.1329 1.5540 29 6 0.0385 -13.4521 2.9152 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0002 32 1 0.6181 -4.9209 -0.8897 33 1 0.6161 -4.9205 0.8903 34 1 2.8338 -5.9125 -0.7792 35 1 0.8741 -7.3451 -0.8901 36 1 0.8722 -7.3456 0.8899 37 1 3.2913 -8.4101 -0.7420 38 1 3.2295 -10.0648 0.9859 39 1 1.5747 -9.1859 2.8513 40 1 0.5059 -8.6717 1.5240 41 1 1.0589 -11.4229 1.2060 42 1 -1.8896 -12.2765 4.4423 43 1 -2.9582 -11.7616 3.1152 44 1 -3.6792 -13.9458 4.0407 45 1 -3.1442 -14.1130 2.3516 46 1 -1.4519 -14.7074 4.8214 47 1 -2.2086 -15.9233 3.7641 48 1 0.8956 -13.4022 2.2437 49 1 0.3610 -13.2352 3.9336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754120118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:42 Heat of formation + Delta-G solvation = -121.450033 kcal Electronic energy + Delta-G solvation = -28426.961214 eV Core-core repulsion = 24109.846271 eV Total energy + Delta-G solvation = -4317.114943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.14804 -40.39762 -38.36548 -37.72193 -36.88053 -35.07440 -33.89810 -32.99206 -31.62137 -31.18611 -30.86900 -28.03168 -26.33152 -24.78450 -23.87853 -23.15325 -23.11961 -20.90281 -20.13056 -19.52230 -18.91478 -17.89729 -17.54808 -16.78927 -16.41148 -16.21601 -15.91793 -15.88776 -15.49174 -15.38933 -15.11321 -14.65446 -14.41877 -14.34447 -13.97827 -13.86171 -13.64758 -13.61463 -13.06200 -12.95101 -12.85373 -12.79145 -12.53186 -12.23728 -12.04982 -11.85247 -11.70599 -11.53479 -11.48403 -11.24289 -11.04731 -10.98593 -10.84723 -10.62903 -10.33073 -10.21256 -10.06950 -9.58238 -9.50704 -9.13703 -8.45264 -8.04055 -7.94451 -6.40309 -3.81179 1.80197 2.35211 3.03214 3.17646 3.28086 3.35538 3.90137 3.92151 3.92499 4.08967 4.14489 4.21786 4.42258 4.50878 4.52796 4.56824 4.64465 4.77940 4.82792 4.87080 4.92960 5.02149 5.11423 5.18159 5.26955 5.29717 5.33814 5.41787 5.44812 5.52120 5.57269 5.61740 5.64606 5.73473 5.77676 5.81465 5.92697 5.98925 6.11716 6.27056 6.35347 6.58379 7.17524 7.20608 7.56835 7.63733 7.94763 8.07884 8.62596 9.19259 9.55721 10.07023 10.77507 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.001458 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.983702 B =19202.707364 C =19952.978659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.069 3.931 15 C -0.110 4.110 16 C -0.184 4.184 17 C 0.139 3.861 18 N -0.725 5.725 19 C 0.515 3.485 20 O -0.535 6.535 21 C -0.107 4.107 22 H 0.103 0.897 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.148 4.148 26 C 0.094 3.906 27 H 0.087 0.913 28 F -0.211 7.211 29 C -0.138 4.138 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.400 0.600 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -33.202 4.218 33.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.295 5.295 14 C -0.059 4.059 15 C -0.130 4.130 16 C -0.203 4.203 17 C 0.017 3.983 18 N -0.377 5.377 19 C 0.301 3.699 20 O -0.411 6.411 21 C -0.128 4.128 22 H 0.121 0.879 23 C -0.139 4.139 24 C -0.159 4.159 25 C -0.186 4.186 26 C 0.058 3.942 27 H 0.104 0.896 28 F -0.192 7.192 29 C -0.176 4.176 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.234 0.766 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.927 -32.378 5.400 33.059 hybrid contribution -0.250 0.516 -1.318 1.438 sum -4.177 -31.861 4.081 32.392 Atomic orbital electron populations 1.69622 1.05947 1.28057 1.50651 1.25271 0.95638 0.99738 0.97330 0.85792 0.79704 0.81106 0.77687 1.19211 1.20783 1.20737 1.19764 0.93417 0.82222 1.47492 0.87843 1.41868 1.09226 1.04599 1.64332 1.19780 0.88370 0.84698 0.84491 1.90520 1.13748 1.87065 1.55421 1.21700 0.94350 0.90920 1.01335 1.60109 1.18676 0.99376 1.51357 1.21289 0.94915 0.88412 1.01325 1.22854 0.98929 0.94315 0.96853 1.22658 0.98545 1.01783 0.97340 1.20516 0.94065 0.83894 0.99840 1.46049 1.31328 1.14387 1.45971 1.20591 0.79934 0.89889 0.79502 1.90739 1.60897 1.49748 1.39690 1.21317 0.96832 0.91736 1.02906 0.87923 1.21379 0.96019 0.96845 0.99680 1.21537 0.97926 0.93977 1.02471 1.22169 0.95969 1.00783 0.99663 1.21541 0.97076 0.96972 0.78650 0.89554 1.92812 1.92095 1.94976 1.39355 1.22146 0.98006 0.93429 1.03982 0.91921 0.77433 0.93788 0.89481 0.83122 0.94480 0.89655 0.86546 0.86456 0.90678 0.89976 0.76603 0.90902 0.90676 0.90961 0.91219 0.89928 0.90639 0.90236 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C 0.44 10.63 7.82 -10.99 -0.09 10.54 16 11 O -0.58 -16.10 15.78 5.55 0.09 -16.01 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.66 -10.88 6.12 -116.33 -0.71 -11.59 16 14 C 0.07 0.86 5.77 -4.97 -0.03 0.83 16 15 C -0.11 -1.13 9.77 -36.03 -0.35 -1.48 16 16 C -0.18 -1.63 9.63 -36.03 -0.35 -1.97 16 17 C 0.14 1.38 5.76 -5.19 -0.03 1.35 16 18 N -0.73 -5.82 5.44 -61.47 -0.33 -6.16 16 19 C 0.51 5.01 7.16 -10.99 -0.08 4.94 16 20 O -0.53 -7.55 15.98 5.56 0.09 -7.46 16 21 C -0.11 -0.72 2.40 -91.77 -0.22 -0.94 16 22 H 0.10 0.66 7.80 -51.93 -0.41 0.25 16 23 C -0.10 -0.72 4.49 -26.73 -0.12 -0.84 16 24 C -0.12 -0.65 5.80 -26.73 -0.16 -0.80 16 25 C -0.15 -0.62 5.72 -26.73 -0.15 -0.77 16 26 C 0.09 0.42 4.12 -26.73 -0.11 0.31 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 F -0.21 -1.48 16.04 2.25 0.04 -1.45 16 29 C -0.14 -0.65 4.90 -26.73 -0.13 -0.78 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.35 5.79 8.42 -39.29 -0.33 5.46 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 1.07 5.31 -51.93 -0.28 0.80 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.93 5.31 -51.93 -0.28 0.66 16 41 H 0.40 2.13 7.88 -40.82 -0.32 1.81 16 42 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.41 7.80 -51.93 -0.41 0.00 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.29 7.56 -51.93 -0.39 -0.10 16 49 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 402.29 15.07 6.06 6.06 Total: -1.00 -34.36 402.29 -8.94 -43.30 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -7.73 Total: 12.65 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.08 Total: 3.13 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.38 Total: -56.47 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.47 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.36 -8.94 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.150 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds