Wall clock time and date at job start Wed Apr 1 2020 01:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46887 * 299.99435 * 3 2 1 6 6 H 1.48505 * 109.46944 * 59.99643 * 3 2 1 7 7 C 1.38952 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99958 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00445 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47276 * 179.97438 * 12 10 9 14 14 C 1.46907 * 111.00101 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46818 * 179.97438 * 14 13 12 16 16 C 1.31008 * 119.99730 * 127.09482 * 15 14 13 17 17 C 1.50695 * 119.99750 * 7.83491 * 16 15 14 18 18 N 1.46504 * 109.47090 * 127.05291 * 17 16 15 19 19 C 1.34774 * 119.99999 * 180.02562 * 18 17 16 20 20 O 1.21280 * 120.00208 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99928 * 179.97438 * 19 18 17 22 22 H 1.08994 * 109.46985 * 299.99547 * 21 19 18 23 23 C 1.52997 * 109.47244 * 179.97438 * 21 19 18 24 24 C 1.52997 * 109.47190 * 179.97438 * 23 21 19 25 25 C 1.52998 * 109.46937 * 60.00656 * 24 23 21 26 26 C 1.53006 * 109.47057 * 299.99651 * 25 24 23 27 27 H 1.09001 * 109.47051 * 180.02562 * 26 25 24 28 28 F 1.39904 * 109.47218 * 300.00186 * 26 25 24 29 29 C 1.52997 * 109.46962 * 60.00364 * 26 25 24 30 30 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99857 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47333 * 59.99549 * 12 10 9 33 33 H 1.09004 * 109.46975 * 299.99823 * 12 10 9 34 34 H 1.00902 * 111.00036 * 303.94686 * 13 12 10 35 35 H 1.08999 * 109.47319 * 59.99669 * 14 13 12 36 36 H 1.09004 * 109.46834 * 299.99488 * 14 13 12 37 37 H 1.07996 * 120.00408 * 307.36872 * 15 14 13 38 38 H 1.07997 * 120.00047 * 187.83675 * 16 15 14 39 39 H 1.09003 * 109.46906 * 247.04900 * 17 16 15 40 40 H 1.09006 * 109.47729 * 7.05036 * 17 16 15 41 41 H 0.96997 * 119.99821 * 359.97438 * 18 17 16 42 42 H 1.08994 * 109.47405 * 300.00080 * 23 21 19 43 43 H 1.09001 * 109.46639 * 60.00216 * 23 21 19 44 44 H 1.08998 * 109.47454 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.47357 * 300.00407 * 24 23 21 46 46 H 1.08994 * 109.47409 * 59.99908 * 25 24 23 47 47 H 1.09003 * 109.46899 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.47454 * 180.02562 * 29 26 25 49 49 H 1.09001 * 109.47544 * 59.99200 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.4980 -7.2709 0.0006 15 6 2.5076 -8.3897 0.0007 16 6 2.4376 -9.3349 0.9052 17 6 1.2522 -9.4036 1.8331 18 7 0.6693 -10.7467 1.7821 19 6 -0.4087 -11.0425 2.5349 20 8 -0.8961 -10.1969 3.2548 21 6 -1.0086 -12.4240 2.4820 22 1 -1.3309 -12.6414 1.4637 23 6 -2.2121 -12.4938 3.4241 24 6 -2.8215 -13.8961 3.3699 25 6 -1.7745 -14.9242 3.8031 26 6 -0.5709 -14.8545 2.8610 27 1 0.1748 -15.5872 3.1694 28 9 -0.9850 -15.1329 1.5540 29 6 0.0385 -13.4521 2.9152 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0002 32 1 0.6181 -4.9209 -0.8897 33 1 0.6161 -4.9205 0.8903 34 1 2.8338 -5.9125 -0.7792 35 1 0.8741 -7.3451 -0.8901 36 1 0.8722 -7.3456 0.8899 37 1 3.2913 -8.4101 -0.7420 38 1 3.2295 -10.0648 0.9859 39 1 1.5747 -9.1859 2.8513 40 1 0.5059 -8.6717 1.5240 41 1 1.0589 -11.4229 1.2060 42 1 -1.8896 -12.2765 4.4423 43 1 -2.9582 -11.7616 3.1152 44 1 -3.6792 -13.9458 4.0407 45 1 -3.1442 -14.1130 2.3516 46 1 -1.4519 -14.7074 4.8214 47 1 -2.2086 -15.9233 3.7641 48 1 0.8956 -13.4022 2.2437 49 1 0.3610 -13.2352 3.9336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754120118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:41 Heat of formation + Delta-G solvation = -146.521412 kcal Electronic energy + Delta-G solvation = -28428.048390 eV Core-core repulsion = 24109.846271 eV Total energy + Delta-G solvation = -4318.202120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.57285 -41.14507 -40.19650 -38.41854 -37.79440 -36.28394 -35.77191 -33.98452 -33.26258 -32.13826 -31.30352 -29.31825 -27.46216 -26.34818 -24.53921 -24.40534 -23.56730 -21.56782 -21.21885 -20.64041 -20.06854 -19.73287 -18.33738 -17.79073 -17.44199 -16.94719 -16.90641 -16.78440 -16.42534 -16.31730 -16.11541 -15.88884 -15.72696 -15.31281 -15.23570 -15.08256 -14.63291 -14.35480 -14.31767 -14.02401 -13.54602 -13.51587 -13.47500 -13.26994 -13.22610 -12.97977 -12.82139 -12.74607 -12.50438 -12.41988 -12.14403 -12.11600 -11.72347 -11.70063 -11.53088 -11.50875 -11.02899 -10.80382 -10.40116 -10.37125 -10.03914 -9.97030 -9.29652 -8.48259 -5.97514 1.02110 1.36074 1.41367 1.56043 1.58522 2.02212 2.27888 2.32859 2.99371 3.18739 3.44796 3.53000 3.58617 3.65694 3.73054 3.88583 4.03839 4.05811 4.11148 4.16177 4.22599 4.29266 4.36715 4.38110 4.42300 4.45180 4.52172 4.52676 4.62198 4.67497 4.75887 4.90180 4.96172 5.02386 5.05880 5.15644 5.21292 5.28216 5.35349 5.39627 5.46302 5.56121 5.78292 5.86638 6.06002 6.37061 6.53298 6.57651 7.10432 7.22808 7.53471 8.08361 8.69394 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.001458 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.983702 B =19202.707364 C =19952.978659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.063 3.937 13 N -0.678 5.678 14 C 0.071 3.929 15 C -0.127 4.127 16 C -0.162 4.162 17 C 0.138 3.862 18 N -0.711 5.711 19 C 0.512 3.488 20 O -0.585 6.585 21 C -0.100 4.100 22 H 0.109 0.891 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.148 4.148 26 C 0.091 3.909 27 H 0.110 0.890 28 F -0.226 7.226 29 C -0.134 4.134 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.347 0.653 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.416 0.584 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -35.010 4.015 35.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.310 5.310 14 C -0.057 4.057 15 C -0.146 4.146 16 C -0.181 4.181 17 C 0.015 3.985 18 N -0.363 5.363 19 C 0.300 3.700 20 O -0.464 6.464 21 C -0.121 4.121 22 H 0.127 0.873 23 C -0.139 4.139 24 C -0.155 4.155 25 C -0.185 4.185 26 C 0.055 3.945 27 H 0.128 0.872 28 F -0.207 7.207 29 C -0.172 4.172 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.166 0.834 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.147 0.853 38 H 0.163 0.837 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.253 0.747 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.564 -34.235 5.170 34.806 hybrid contribution -0.391 1.020 -1.227 1.643 sum -3.955 -33.215 3.944 33.681 Atomic orbital electron populations 1.69683 1.06900 1.29298 1.50271 1.26080 0.96560 1.02515 0.96161 0.84837 0.78026 0.76906 0.78341 1.19709 1.19460 1.19654 1.19736 0.92769 0.84005 1.49996 0.90210 1.41942 1.09346 1.04748 1.64952 1.20818 0.88252 0.86112 0.82304 1.90485 1.15767 1.87947 1.56682 1.21546 0.94080 0.88266 1.03013 1.60101 1.18947 1.00425 1.51558 1.21313 0.95480 0.87180 1.01679 1.22833 0.99257 0.94211 0.98279 1.22773 0.98153 1.01660 0.95536 1.20405 0.94241 0.84461 0.99368 1.45911 1.30698 1.14103 1.45579 1.21150 0.79709 0.90533 0.78627 1.90717 1.62422 1.51405 1.41893 1.21294 0.97163 0.90434 1.03182 0.87338 1.21347 0.95845 0.97536 0.99159 1.21501 0.98523 0.93143 1.02378 1.22191 0.95536 1.00651 1.00136 1.21717 0.97662 0.97214 0.77859 0.87196 1.92787 1.92308 1.95064 1.40532 1.22168 0.97680 0.92814 1.04559 0.91266 0.76990 0.91384 0.88238 0.83405 0.93340 0.90044 0.85296 0.83725 0.92001 0.91623 0.74676 0.91830 0.92695 0.90460 0.91756 0.88899 0.89800 0.88706 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 1.00 43.50 29.55 68.60 2.03 45.52 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.34 -19.44 9.68 84.04 0.81 -18.62 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.57 -30.15 5.29 -306.99 -1.62 -31.77 16 10 C 0.44 21.41 7.82 87.66 0.69 22.10 16 11 O -0.62 -35.20 15.78 -3.06 -0.05 -35.25 16 12 C 0.06 2.26 6.17 85.56 0.53 2.79 16 13 N -0.68 -21.84 6.12 -521.96 -3.19 -25.03 16 14 C 0.07 1.69 5.77 85.56 0.49 2.18 16 15 C -0.13 -2.36 9.77 25.64 0.25 -2.11 16 16 C -0.16 -2.50 9.63 25.64 0.25 -2.26 16 17 C 0.14 2.61 5.76 85.63 0.49 3.10 16 18 N -0.71 -10.46 5.44 -466.78 -2.54 -13.00 16 19 C 0.51 9.81 7.16 87.66 0.63 10.43 16 20 O -0.58 -17.03 15.98 -3.03 -0.05 -17.08 16 21 C -0.10 -1.26 2.40 -11.54 -0.03 -1.28 16 22 H 0.11 1.26 7.80 -2.39 -0.02 1.25 16 23 C -0.10 -1.43 4.49 30.59 0.14 -1.29 16 24 C -0.12 -1.16 5.80 30.59 0.18 -0.98 16 25 C -0.15 -0.94 5.72 30.60 0.17 -0.77 16 26 C 0.09 0.60 4.12 30.60 0.13 0.73 16 27 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 28 F -0.23 -2.71 16.04 44.97 0.72 -1.98 16 29 C -0.13 -0.97 4.90 30.60 0.15 -0.82 16 30 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.40 19.85 7.90 -92.71 -0.73 19.11 16 32 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 34 H 0.35 11.38 8.42 -89.69 -0.76 10.62 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 2.00 5.31 -2.38 -0.01 1.99 16 37 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.49 5.31 -2.38 -0.01 1.47 16 41 H 0.42 3.41 7.88 -92.71 -0.73 2.68 16 42 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 43 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.71 7.80 -2.39 -0.02 0.69 16 46 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.09 0.41 7.56 -2.39 -0.02 0.39 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -75.91 402.29 -0.31 -76.22 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -1.23 Total: 39.66 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 5.34 Total: 12.93 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -7.07 Total: -120.02 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -0.10 Total: -52.33 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.72 Total: -1.98 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.91 -0.31 -76.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.306 kcal (2) G-P(sol) polarization free energy of solvation -75.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds