Wall clock time and date at job start Wed Apr 1 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47183 * 180.02562 * 14 13 12 16 16 C 1.30997 * 120.00291 * 125.00007 * 15 14 13 17 17 C 1.50700 * 120.00291 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47245 * 124.99889 * 17 16 15 19 19 C 1.34773 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21282 * 120.00087 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.00393 * 180.02562 * 19 18 17 22 22 H 1.09004 * 109.47168 * 59.99953 * 21 19 18 23 23 C 1.53003 * 109.46940 * 300.00344 * 21 19 18 24 24 C 1.52996 * 109.47106 * 180.02562 * 23 21 19 25 25 C 1.53004 * 109.47440 * 59.99405 * 24 23 21 26 26 C 1.52995 * 109.47244 * 300.00421 * 25 24 23 27 27 H 1.09004 * 109.46943 * 299.99615 * 26 25 24 28 28 F 1.39897 * 109.47303 * 180.02562 * 26 25 24 29 29 C 1.52995 * 109.47536 * 180.02562 * 21 19 18 30 30 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 35 35 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 36 36 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 37 37 H 1.08003 * 119.99888 * 305.00006 * 15 14 13 38 38 H 1.08003 * 119.99821 * 359.97438 * 16 15 14 39 39 H 1.08996 * 109.47472 * 245.00392 * 17 16 15 40 40 H 1.09004 * 109.46881 * 4.99901 * 17 16 15 41 41 H 0.97003 * 119.99960 * 0.02562 * 18 17 16 42 42 H 1.09005 * 109.47148 * 299.99325 * 23 21 19 43 43 H 1.08994 * 109.47431 * 59.99667 * 23 21 19 44 44 H 1.09004 * 109.47023 * 299.99622 * 24 23 21 45 45 H 1.09002 * 109.47675 * 179.97438 * 24 23 21 46 46 H 1.09007 * 109.47021 * 180.02562 * 25 24 23 47 47 H 1.09004 * 109.46835 * 60.00102 * 25 24 23 48 48 H 1.08996 * 109.47262 * 300.00339 * 29 21 19 49 49 H 1.09004 * 109.46978 * 59.99778 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 2.5079 -8.3897 -0.0015 16 6 2.4635 -9.3119 0.9279 17 6 3.4727 -10.4311 0.9276 18 7 4.1509 -10.4773 2.2253 19 6 5.1012 -11.4047 2.4564 20 8 5.3953 -12.2006 1.5898 21 6 5.7985 -11.4527 3.7915 22 1 5.0647 -11.6259 4.5787 23 6 6.5113 -10.1223 4.0427 24 6 7.2198 -10.1712 5.3978 25 6 8.2450 -11.3070 5.3967 26 6 7.5322 -12.6373 5.1456 27 1 6.7986 -12.8107 5.9330 28 9 8.4695 -13.6758 5.1452 29 6 6.8241 -12.5880 3.7908 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6170 -4.9209 0.8886 33 1 0.6176 -4.9205 -0.8913 34 1 2.8335 -5.9120 -0.7829 35 1 0.8738 -7.3454 0.8886 36 1 0.8731 -7.3451 -0.8914 37 1 3.2680 -8.4313 -0.7676 38 1 1.7037 -9.2701 1.6942 39 1 2.9644 -11.3786 0.7493 40 1 4.2064 -10.2585 0.1402 41 1 3.9160 -9.8405 2.9183 42 1 7.2453 -9.9491 3.2555 43 1 5.7811 -9.3132 4.0430 44 1 6.4863 -10.3447 6.1852 45 1 7.7280 -9.2237 5.5766 46 1 8.7494 -11.3421 6.3625 47 1 8.9785 -11.1336 4.6093 48 1 6.3166 -13.5359 3.6116 49 1 7.5579 -12.4143 3.0037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754120119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:45 Heat of formation + Delta-G solvation = -132.196574 kcal Electronic energy + Delta-G solvation = -28075.739390 eV Core-core repulsion = 23758.158442 eV Total energy + Delta-G solvation = -4317.580948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.99136 -40.48844 -38.37587 -37.86341 -36.73781 -35.29680 -33.94623 -32.96881 -31.61533 -31.24010 -30.63677 -28.49541 -26.25383 -24.59879 -23.73394 -23.02651 -22.49059 -21.06784 -20.54181 -19.89565 -19.16070 -17.91726 -17.73216 -16.63384 -16.38028 -16.16509 -15.92114 -15.71947 -15.40273 -15.31705 -14.94153 -14.78677 -14.49617 -14.31131 -14.14275 -13.77348 -13.72707 -13.61858 -13.33780 -13.15724 -12.89468 -12.56152 -12.32109 -12.22451 -11.81687 -11.74093 -11.61889 -11.61307 -11.53895 -11.27024 -11.20599 -11.06773 -11.01191 -10.73047 -10.41783 -10.24958 -10.14277 -9.61046 -9.53989 -9.24989 -8.50903 -8.10141 -7.99228 -6.44756 -3.85749 1.78828 2.31602 2.99165 3.15609 3.24537 3.30444 3.87164 3.97392 4.02818 4.05273 4.08829 4.30933 4.36144 4.46275 4.51814 4.61902 4.71236 4.76000 4.80432 4.84606 5.01453 5.05084 5.08236 5.20047 5.23805 5.32551 5.36963 5.41653 5.45732 5.46047 5.55981 5.60943 5.62664 5.65475 5.70799 5.75259 5.86721 5.91879 6.06242 6.21648 6.38402 6.54188 7.12073 7.18108 7.52331 7.57584 7.90050 8.03052 8.57861 9.14726 9.50813 10.02115 10.72890 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.001519 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.159817 B =18426.706994 C =19985.689956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.082 3.918 15 C -0.109 4.109 16 C -0.185 4.185 17 C 0.152 3.848 18 N -0.724 5.724 19 C 0.518 3.482 20 O -0.540 6.540 21 C -0.103 4.103 22 H 0.101 0.899 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.148 4.148 26 C 0.092 3.908 27 H 0.083 0.917 28 F -0.214 7.214 29 C -0.126 4.126 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.350 0.650 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -23.896 9.627 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.298 5.298 14 C -0.047 4.047 15 C -0.129 4.129 16 C -0.204 4.204 17 C 0.030 3.970 18 N -0.375 5.375 19 C 0.304 3.696 20 O -0.417 6.417 21 C -0.124 4.124 22 H 0.119 0.881 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.186 4.186 26 C 0.056 3.944 27 H 0.101 0.899 28 F -0.194 7.194 29 C -0.164 4.164 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.170 0.830 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.239 0.761 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.987 -24.311 9.664 27.078 hybrid contribution -0.795 1.130 -0.629 1.518 sum 6.192 -23.181 9.036 25.639 Atomic orbital electron populations 1.69613 1.05941 1.28187 1.50539 1.25264 0.95642 0.99740 0.97269 0.85851 0.79248 0.80759 0.78392 1.20411 1.20905 1.19396 1.19710 0.93394 0.82229 1.47652 0.87901 1.41862 1.09203 1.04598 1.64305 1.19792 0.88386 0.84707 0.84577 1.90526 1.13753 1.87053 1.55425 1.21691 0.94337 0.90949 1.01275 1.60120 1.18750 0.99469 1.51434 1.21090 0.94455 0.88172 1.00999 1.22886 0.98292 0.93575 0.98123 1.22726 1.00253 0.96865 1.00552 1.20309 0.93632 0.97721 0.85376 1.46026 1.39618 1.34952 1.16943 1.20532 0.79328 0.80320 0.89469 1.90719 1.64209 1.40156 1.46630 1.21254 0.98146 0.97359 0.95674 0.88062 1.21624 1.00246 0.95161 0.98434 1.21467 0.98051 0.98682 0.97058 1.22179 0.99117 0.93815 1.03515 1.21562 0.89214 0.84797 0.98823 0.89895 1.92820 1.68037 1.60762 1.97816 1.21907 0.98525 0.99033 0.96930 0.91855 0.77449 0.89552 0.93780 0.83022 0.90494 0.94273 0.86950 0.86553 0.90887 0.91084 0.76135 0.90798 0.90509 0.91194 0.90412 0.90567 0.90497 0.89998 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.21 7.82 -10.98 -0.09 10.12 16 11 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 12 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 13 N -0.67 -10.22 6.11 -116.33 -0.71 -10.94 16 14 C 0.08 0.91 6.13 -4.97 -0.03 0.88 16 15 C -0.11 -1.06 9.38 -36.03 -0.34 -1.40 16 16 C -0.18 -1.54 9.24 -36.03 -0.33 -1.87 16 17 C 0.15 1.32 6.11 -5.20 -0.03 1.29 16 18 N -0.72 -5.70 5.44 -61.48 -0.33 -6.03 16 19 C 0.52 4.85 7.15 -10.99 -0.08 4.77 16 20 O -0.54 -7.25 15.98 5.56 0.09 -7.16 16 21 C -0.10 -0.65 2.53 -91.77 -0.23 -0.88 16 22 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 23 C -0.12 -0.65 5.10 -26.73 -0.14 -0.79 16 24 C -0.12 -0.52 5.92 -26.73 -0.16 -0.68 16 25 C -0.15 -0.82 5.66 -26.73 -0.15 -0.97 16 26 C 0.09 0.60 3.87 -26.76 -0.10 0.50 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 F -0.21 -2.01 17.08 2.25 0.04 -1.97 16 29 C -0.13 -0.95 4.22 -26.76 -0.11 -1.06 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.35 5.59 8.42 -39.29 -0.33 5.26 16 35 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 1.07 7.84 -52.48 -0.41 0.66 16 38 H 0.12 0.86 7.84 -52.48 -0.41 0.44 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 41 H 0.40 2.37 7.88 -40.82 -0.32 2.04 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.38 7.56 -51.93 -0.39 -0.02 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 49 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 408.35 15.07 6.15 6.15 Total: -1.00 -33.59 408.35 -9.10 -42.69 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.00 Total: 11.87 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.06 Total: 2.79 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.38 Total: -54.58 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.18 Total: -22.73 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.59 -9.10 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.502 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds