Wall clock time and date at job start Wed Apr 1 2020 01:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47183 * 180.02562 * 14 13 12 16 16 C 1.30997 * 120.00291 * 125.00007 * 15 14 13 17 17 C 1.50700 * 120.00291 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47245 * 124.99889 * 17 16 15 19 19 C 1.34773 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21282 * 120.00087 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.00393 * 180.02562 * 19 18 17 22 22 H 1.09004 * 109.47168 * 59.99953 * 21 19 18 23 23 C 1.53003 * 109.46940 * 300.00344 * 21 19 18 24 24 C 1.52996 * 109.47106 * 180.02562 * 23 21 19 25 25 C 1.53004 * 109.47440 * 59.99405 * 24 23 21 26 26 C 1.52995 * 109.47244 * 300.00421 * 25 24 23 27 27 H 1.09004 * 109.46943 * 299.99615 * 26 25 24 28 28 F 1.39897 * 109.47303 * 180.02562 * 26 25 24 29 29 C 1.52995 * 109.47536 * 180.02562 * 21 19 18 30 30 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 35 35 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 36 36 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 37 37 H 1.08003 * 119.99888 * 305.00006 * 15 14 13 38 38 H 1.08003 * 119.99821 * 359.97438 * 16 15 14 39 39 H 1.08996 * 109.47472 * 245.00392 * 17 16 15 40 40 H 1.09004 * 109.46881 * 4.99901 * 17 16 15 41 41 H 0.97003 * 119.99960 * 0.02562 * 18 17 16 42 42 H 1.09005 * 109.47148 * 299.99325 * 23 21 19 43 43 H 1.08994 * 109.47431 * 59.99667 * 23 21 19 44 44 H 1.09004 * 109.47023 * 299.99622 * 24 23 21 45 45 H 1.09002 * 109.47675 * 179.97438 * 24 23 21 46 46 H 1.09007 * 109.47021 * 180.02562 * 25 24 23 47 47 H 1.09004 * 109.46835 * 60.00102 * 25 24 23 48 48 H 1.08996 * 109.47262 * 300.00339 * 29 21 19 49 49 H 1.09004 * 109.46978 * 59.99778 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 2.5079 -8.3897 -0.0015 16 6 2.4635 -9.3119 0.9279 17 6 3.4727 -10.4311 0.9276 18 7 4.1509 -10.4773 2.2253 19 6 5.1012 -11.4047 2.4564 20 8 5.3953 -12.2006 1.5898 21 6 5.7985 -11.4527 3.7915 22 1 5.0647 -11.6259 4.5787 23 6 6.5113 -10.1223 4.0427 24 6 7.2198 -10.1712 5.3978 25 6 8.2450 -11.3070 5.3967 26 6 7.5322 -12.6373 5.1456 27 1 6.7986 -12.8107 5.9330 28 9 8.4695 -13.6758 5.1452 29 6 6.8241 -12.5880 3.7908 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6170 -4.9209 0.8886 33 1 0.6176 -4.9205 -0.8913 34 1 2.8335 -5.9120 -0.7829 35 1 0.8738 -7.3454 0.8886 36 1 0.8731 -7.3451 -0.8914 37 1 3.2680 -8.4313 -0.7676 38 1 1.7037 -9.2701 1.6942 39 1 2.9644 -11.3786 0.7493 40 1 4.2064 -10.2585 0.1402 41 1 3.9160 -9.8405 2.9183 42 1 7.2453 -9.9491 3.2555 43 1 5.7811 -9.3132 4.0430 44 1 6.4863 -10.3447 6.1852 45 1 7.7280 -9.2237 5.5766 46 1 8.7494 -11.3421 6.3625 47 1 8.9785 -11.1336 4.6093 48 1 6.3166 -13.5359 3.6116 49 1 7.5579 -12.4143 3.0037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754120119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:44 Heat of formation + Delta-G solvation = -156.332612 kcal Electronic energy + Delta-G solvation = -28076.786007 eV Core-core repulsion = 23758.158442 eV Total energy + Delta-G solvation = -4318.627565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.63478 -41.19638 -40.15202 -38.45668 -37.70175 -36.35445 -35.81333 -33.91214 -33.23508 -32.15465 -31.17672 -29.57383 -27.59061 -25.99180 -24.63375 -23.56507 -23.35297 -21.71642 -21.30435 -20.99516 -20.41257 -19.85952 -18.39755 -17.89062 -17.29170 -17.01316 -16.76893 -16.64978 -16.45815 -16.24120 -15.98926 -15.90216 -15.55906 -15.34943 -15.13374 -15.11816 -14.79456 -14.50952 -14.20427 -14.04745 -13.81413 -13.52149 -13.44801 -13.22045 -13.04571 -12.91236 -12.78344 -12.66522 -12.41492 -12.28551 -12.12159 -12.08688 -12.02823 -11.68388 -11.57456 -11.50518 -11.25410 -10.86385 -10.37081 -10.34849 -10.02452 -10.00026 -9.26774 -8.46393 -5.95156 1.05049 1.38530 1.42731 1.55239 1.58478 2.05789 2.29790 2.32867 3.01834 3.21032 3.46176 3.47661 3.55502 3.58944 3.77308 3.86987 3.96315 4.04000 4.09536 4.23374 4.28476 4.31115 4.35954 4.43787 4.48222 4.52604 4.55954 4.56581 4.59735 4.67230 4.70505 4.87311 4.92229 5.01363 5.07946 5.16186 5.18830 5.21826 5.35677 5.41402 5.42690 5.67027 5.77252 5.90367 6.10411 6.37488 6.52752 6.60583 7.13066 7.21166 7.56787 8.12142 8.70832 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.001519 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.159817 B =18426.706994 C =19985.689956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.681 5.681 14 C 0.086 3.914 15 C -0.127 4.127 16 C -0.161 4.161 17 C 0.152 3.848 18 N -0.713 5.713 19 C 0.513 3.487 20 O -0.588 6.588 21 C -0.093 4.093 22 H 0.133 0.867 23 C -0.115 4.115 24 C -0.109 4.109 25 C -0.147 4.147 26 C 0.090 3.910 27 H 0.109 0.891 28 F -0.232 7.232 29 C -0.124 4.124 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.343 0.657 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.417 0.583 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -23.709 11.266 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.313 5.313 14 C -0.041 4.041 15 C -0.146 4.146 16 C -0.181 4.181 17 C 0.029 3.971 18 N -0.365 5.365 19 C 0.301 3.699 20 O -0.468 6.468 21 C -0.114 4.114 22 H 0.151 0.849 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.185 4.185 26 C 0.054 3.946 27 H 0.127 0.873 28 F -0.213 7.213 29 C -0.162 4.162 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.597 -24.119 11.323 27.226 hybrid contribution -0.369 0.981 -1.156 1.561 sum 5.229 -23.138 10.166 25.808 Atomic orbital electron populations 1.69669 1.06782 1.29294 1.50269 1.26020 0.96542 1.02358 0.96251 0.84937 0.77902 0.76941 0.78616 1.19701 1.19516 1.19817 1.19669 0.92720 0.84092 1.50004 0.90359 1.41930 1.09353 1.04693 1.65015 1.20923 0.88265 0.86239 0.82180 1.90494 1.15944 1.87989 1.56695 1.21553 0.93971 0.87918 1.03313 1.60134 1.19052 1.00718 1.51419 1.21131 0.94640 0.86212 1.02159 1.22802 0.98706 0.94068 0.99049 1.22759 0.99713 0.95595 0.99988 1.20247 0.93472 0.97955 0.85443 1.45951 1.38935 1.34703 1.16926 1.21092 0.79117 0.79635 0.90062 1.90701 1.65676 1.42093 1.48341 1.21250 0.98207 0.97274 0.94663 0.84918 1.21628 1.00121 0.94865 0.98658 1.21457 0.98084 0.98357 0.96756 1.22178 0.99209 0.93600 1.03511 1.21767 0.89369 0.84749 0.98707 0.87296 1.92782 1.68880 1.61799 1.97862 1.21848 0.98304 0.99038 0.97025 0.91294 0.76909 0.87445 0.91457 0.83819 0.89180 0.93096 0.87423 0.84698 0.90863 0.92617 0.74627 0.92684 0.89282 0.89106 0.89939 0.89591 0.91875 0.91195 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 2 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 3 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.34 -18.82 9.68 84.04 0.81 -18.01 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.79 5.29 -306.98 -1.62 -30.41 16 10 C 0.44 20.24 7.82 87.66 0.69 20.92 16 11 O -0.62 -34.13 15.78 -3.07 -0.05 -34.18 16 12 C 0.06 2.08 6.17 85.56 0.53 2.61 16 13 N -0.68 -19.91 6.11 -521.96 -3.19 -23.10 16 14 C 0.09 1.72 6.13 85.56 0.52 2.24 16 15 C -0.13 -2.26 9.38 25.65 0.24 -2.02 16 16 C -0.16 -2.33 9.24 25.65 0.24 -2.09 16 17 C 0.15 2.49 6.11 85.63 0.52 3.01 16 18 N -0.71 -10.24 5.44 -466.80 -2.54 -12.78 16 19 C 0.51 9.37 7.15 87.66 0.63 10.00 16 20 O -0.59 -16.30 15.98 -3.04 -0.05 -16.35 16 21 C -0.09 -1.05 2.53 -11.54 -0.03 -1.08 16 22 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 23 C -0.11 -1.10 5.10 30.59 0.16 -0.94 16 24 C -0.11 -0.74 5.92 30.59 0.18 -0.55 16 25 C -0.15 -1.43 5.66 30.59 0.17 -1.26 16 26 C 0.09 1.08 3.87 30.57 0.12 1.20 16 27 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 28 F -0.23 -4.35 17.08 44.97 0.77 -3.59 16 29 C -0.12 -1.87 4.22 30.57 0.13 -1.74 16 30 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 32 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.34 10.79 8.42 -89.69 -0.76 10.03 16 35 H 0.09 1.56 7.79 -2.39 -0.02 1.55 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 2.01 7.84 -2.91 -0.02 1.99 16 38 H 0.14 1.50 7.84 -2.91 -0.02 1.48 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.10 7.79 -2.38 -0.02 1.08 16 41 H 0.42 3.83 7.88 -92.71 -0.73 3.10 16 42 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.09 0.65 7.56 -2.39 -0.02 0.64 16 44 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 49 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 Total: -1.00 -74.62 408.35 -0.24 -74.86 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -1.24 Total: 37.56 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.37 Total: 12.13 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -7.07 Total: -114.77 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.10 Total: -50.52 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.77 Total: -3.59 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -74.62 -0.24 -74.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754120119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.475 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds