Wall clock time and date at job start Wed Apr 1 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48498 * 109.47143 * 240.27344 * 3 2 1 5 5 H 1.48501 * 109.47234 * 0.27370 * 3 2 1 6 6 H 1.48501 * 109.47054 * 120.27063 * 3 2 1 7 7 C 1.38950 * 120.00314 * 180.27056 * 2 1 3 8 8 H 1.08001 * 119.99574 * 179.72693 * 7 2 1 9 9 N 1.37097 * 119.99941 * 359.72754 * 7 2 1 10 10 C 1.34777 * 120.00048 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99573 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00158 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47426 * 173.84568 * 12 10 9 14 14 C 1.47485 * 110.99693 * 294.35062 * 13 12 10 15 15 C 1.53517 * 87.92683 * 221.29327 * 14 13 12 16 16 C 1.47473 * 111.00172 * 198.37844 * 13 12 10 17 17 H 1.09001 * 113.47967 * 23.93331 * 16 13 12 18 18 C 1.53008 * 113.47472 * 253.46865 * 16 13 12 19 19 N 1.46496 * 109.47064 * 55.00003 * 18 16 13 20 20 C 1.34779 * 120.00092 * 180.02562 * 19 18 16 21 21 O 1.21282 * 119.99593 * 359.97438 * 20 19 18 22 22 C 1.50695 * 120.00024 * 180.02562 * 20 19 18 23 23 F 1.39899 * 109.47484 * 54.99575 * 22 20 19 24 24 C 1.53000 * 109.47154 * 294.99482 * 22 20 19 25 25 C 1.53001 * 109.47292 * 180.02562 * 24 22 20 26 26 C 1.52994 * 109.46853 * 60.00301 * 25 24 22 27 27 C 1.52999 * 109.47275 * 299.99782 * 26 25 24 28 28 C 1.52995 * 109.47094 * 60.00002 * 27 26 25 29 29 H 0.96996 * 120.00558 * 359.72489 * 1 2 3 30 30 H 0.97002 * 120.00064 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47323 * 293.84781 * 12 10 9 32 32 H 1.09004 * 109.47030 * 53.84729 * 12 10 9 33 33 H 1.08995 * 113.47618 * 336.05660 * 14 13 12 34 34 H 1.08998 * 113.47999 * 106.47326 * 14 13 12 35 35 H 1.09002 * 114.17226 * 139.67357 * 15 14 13 36 36 H 1.09000 * 114.16928 * 272.37477 * 15 14 13 37 37 H 1.08997 * 109.46941 * 175.00248 * 18 16 13 38 38 H 1.09000 * 109.46804 * 294.99932 * 18 16 13 39 39 H 0.97004 * 120.00062 * 0.02562 * 19 18 16 40 40 H 1.08998 * 109.47173 * 300.00354 * 24 22 20 41 41 H 1.09004 * 109.47327 * 60.00312 * 24 22 20 42 42 H 1.09000 * 109.46700 * 299.99925 * 25 24 22 43 43 H 1.09001 * 109.47137 * 180.02562 * 25 24 22 44 44 H 1.09005 * 109.46752 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.47775 * 60.00282 * 26 25 24 46 46 H 1.09007 * 109.46960 * 300.00259 * 27 26 25 47 47 H 1.08997 * 109.47278 * 180.02562 * 27 26 25 48 48 H 1.09001 * 109.47561 * 179.97438 * 28 27 26 49 49 H 1.09007 * 109.47007 * 60.00286 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.0967 1.6994 -1.2158 5 1 1.2829 2.7465 0.0067 6 1 3.1067 1.6937 1.2092 7 6 2.0089 -1.2033 -0.0057 8 1 3.0889 -1.2031 -0.0101 9 7 1.3235 -2.3906 -0.0056 10 6 1.9974 -3.5578 -0.0117 11 8 3.2103 -3.5576 -0.0167 12 6 1.2440 -4.8629 -0.0122 13 7 2.1911 -5.9750 -0.1677 14 6 2.8406 -5.9348 -1.4912 15 6 2.6775 -7.4599 -1.5557 16 6 1.4990 -7.2011 -0.6066 17 1 0.5592 -7.0079 -1.1238 18 6 1.3629 -8.2523 0.4969 19 7 0.7023 -7.6560 1.6605 20 6 0.4748 -8.4000 2.7611 21 8 0.8166 -9.5634 2.7877 22 6 -0.2052 -7.7868 3.9579 23 9 -1.4268 -7.2293 3.5654 24 6 0.6882 -6.6936 4.5475 25 6 -0.0019 -6.0714 5.7631 26 6 -0.2491 -7.1519 6.8176 27 6 -1.1426 -8.2451 6.2281 28 6 -0.4525 -8.8672 5.0126 29 1 -0.4851 0.8400 0.0040 30 1 0.3535 -2.3907 -0.0013 31 1 0.7064 -4.9725 0.9296 32 1 0.5339 -4.8722 -0.8391 33 1 2.2589 -5.4037 -2.2445 34 1 3.8804 -5.6096 -1.4549 35 1 2.3864 -7.8366 -2.5362 36 1 3.4996 -8.0162 -1.1052 37 1 0.7679 -9.0888 0.1303 38 1 2.3524 -8.6083 0.7835 39 1 0.4287 -6.7256 1.6390 40 1 1.6400 -7.1279 4.8533 41 1 0.8648 -5.9240 3.7961 42 1 -0.9538 -5.6371 5.4575 43 1 0.6344 -5.2923 6.1828 44 1 -0.7404 -6.7085 7.6838 45 1 0.7028 -7.5861 7.1232 46 1 -2.0946 -7.8108 5.9227 47 1 -1.3191 -9.0146 6.9795 48 1 -1.0888 -9.6464 4.5928 49 1 0.4995 -9.3015 5.3180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754497288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:14 Heat of formation + Delta-G solvation = -100.503320 kcal Electronic energy + Delta-G solvation = -31004.332229 eV Core-core repulsion = 26688.125603 eV Total energy + Delta-G solvation = -4316.206626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.07973 -40.58861 -39.61892 -37.82618 -37.48317 -34.72787 -33.97132 -31.50017 -31.27553 -31.01480 -30.61151 -28.32655 -25.87041 -24.28062 -23.79854 -23.10199 -22.62704 -20.73958 -19.92868 -19.64968 -19.32080 -18.02782 -17.96893 -16.67979 -16.28784 -16.14503 -15.81528 -15.38414 -15.25802 -14.97337 -14.79879 -14.57142 -14.38147 -13.97131 -13.87719 -13.74634 -13.67031 -13.44543 -12.82249 -12.76100 -12.51960 -12.37116 -12.34326 -12.10339 -11.93863 -11.75807 -11.55346 -11.42206 -11.33387 -11.10092 -10.96676 -10.84823 -10.82525 -10.55151 -10.48419 -10.32155 -10.26816 -9.76357 -9.55190 -9.17737 -8.79793 -8.35412 -8.03027 -6.47495 -3.88742 2.32176 2.85450 3.15658 3.22292 3.26260 3.80667 3.90560 4.08166 4.15355 4.21285 4.32790 4.42428 4.47645 4.70551 4.81452 4.85462 4.90180 4.93948 5.00259 5.07703 5.17160 5.19801 5.32364 5.34773 5.36187 5.44549 5.51817 5.58256 5.69812 5.71800 5.76197 5.77566 5.79770 5.80892 5.87295 5.97452 5.99183 6.03939 6.13332 6.17796 6.22030 6.29843 6.52450 7.12630 7.28987 7.49314 7.94809 7.98626 8.54028 9.11446 9.46508 9.97722 10.69899 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.003250 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.997370 B = 8612.130879 C =10817.341269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.441 3.559 11 O -0.577 6.577 12 C 0.007 3.993 13 N -0.438 5.438 14 C 0.016 3.984 15 C -0.136 4.136 16 C 0.002 3.998 17 H 0.084 0.916 18 C 0.139 3.861 19 N -0.709 5.709 20 C 0.501 3.499 21 O -0.530 6.530 22 C 0.110 3.890 23 F -0.192 7.192 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.121 4.121 29 H 0.273 0.727 30 H 0.392 0.608 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.405 0.595 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -16.321 6.357 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.461 6.461 12 C -0.125 4.125 13 N -0.160 5.160 14 C -0.112 4.112 15 C -0.174 4.174 16 C -0.108 4.108 17 H 0.102 0.898 18 C 0.016 3.984 19 N -0.360 5.360 20 C 0.284 3.716 21 O -0.407 6.407 22 C 0.089 3.911 23 F -0.173 7.173 24 C -0.177 4.177 25 C -0.157 4.157 26 C -0.160 4.160 27 C -0.159 4.159 28 C -0.159 4.159 29 H 0.083 0.917 30 H 0.225 0.775 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.241 0.759 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.556 -16.920 6.970 18.477 hybrid contribution -1.116 1.617 -0.808 2.125 sum -3.673 -15.303 6.162 16.901 Atomic orbital electron populations 1.69595 1.05944 1.28381 1.50202 1.25260 0.95623 0.99732 0.97146 0.85924 0.78797 0.80435 0.79118 1.19890 1.20920 1.19839 1.19645 0.93334 0.82172 1.47937 0.87960 1.41865 1.09167 1.04585 1.64152 1.19586 0.88365 0.84387 0.85086 1.90538 1.13496 1.86879 1.55197 1.22558 0.95198 0.93047 1.01733 1.68892 1.18100 1.00518 1.28530 1.23536 1.02722 0.94498 0.90476 1.23214 0.97539 0.97753 0.98940 1.23855 0.98086 0.93502 0.95346 0.89849 1.21399 0.98099 0.94829 0.84103 1.45970 1.59906 1.15384 1.14755 1.20808 0.79937 0.86697 0.84155 1.90705 1.51963 1.16224 1.81815 1.21196 0.81474 0.95235 0.93194 1.92893 1.45420 1.86815 1.92128 1.22148 0.98805 0.97302 0.99455 1.21515 1.01519 0.98087 0.94619 1.21593 1.00086 0.96230 0.98106 1.21558 0.99279 0.98355 0.96689 1.21883 1.03289 0.96361 0.94404 0.91735 0.77503 0.89784 0.92541 0.91534 0.88740 0.90466 0.88644 0.91075 0.90494 0.75932 0.89460 0.89856 0.90935 0.90726 0.91477 0.91707 0.91211 0.91134 0.90266 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 13.05 55.50 0.72 -23.24 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 10 C 0.44 9.98 7.46 -10.99 -0.08 9.90 16 11 O -0.58 -15.10 14.98 5.54 0.08 -15.02 16 12 C 0.01 0.11 5.09 -4.98 -0.03 0.09 16 13 N -0.44 -6.71 5.74 -237.95 -1.37 -8.08 16 14 C 0.02 0.24 6.34 -7.54 -0.05 0.19 16 15 C -0.14 -1.46 8.00 -26.20 -0.21 -1.67 16 16 C 0.00 0.03 3.25 -71.44 -0.23 -0.21 16 17 H 0.08 0.89 7.63 -51.93 -0.40 0.49 16 18 C 0.14 1.64 5.81 -4.04 -0.02 1.61 16 19 N -0.71 -8.90 5.42 -60.29 -0.33 -9.23 16 20 C 0.50 6.70 6.82 -10.99 -0.07 6.63 16 21 O -0.53 -8.34 15.98 5.56 0.09 -8.25 16 22 C 0.11 1.28 1.05 -91.77 -0.10 1.18 16 23 F -0.19 -2.41 15.76 2.25 0.04 -2.37 16 24 C -0.14 -1.50 4.95 -26.73 -0.13 -1.63 16 25 C -0.12 -1.14 5.80 -26.73 -0.16 -1.30 16 26 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 27 C -0.12 -1.03 5.80 -26.73 -0.16 -1.18 16 28 C -0.12 -1.24 4.30 -26.73 -0.11 -1.35 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 31 H 0.08 1.27 6.56 -51.93 -0.34 0.93 16 32 H 0.06 0.84 7.56 -51.93 -0.39 0.45 16 33 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 34 H 0.09 1.58 7.97 -51.93 -0.41 1.16 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.99 7.94 -51.93 -0.41 0.58 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.97 7.88 -51.93 -0.41 0.56 16 39 H 0.40 5.01 6.11 -40.82 -0.25 4.76 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 42 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.63 7.80 -51.92 -0.41 0.22 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 0.90 8.05 -51.92 -0.42 0.48 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -31.60 392.44 -9.55 -41.15 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -7.87 Total: 13.99 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.75 Total: 3.30 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -1.03 Total: -54.36 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.60 -9.55 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754497288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.350 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds