Wall clock time and date at job start Wed Apr 1 2020 00:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48498 * 109.47143 * 240.27344 * 3 2 1 5 5 H 1.48501 * 109.47234 * 0.27370 * 3 2 1 6 6 H 1.48501 * 109.47054 * 120.27063 * 3 2 1 7 7 C 1.38950 * 120.00314 * 180.27056 * 2 1 3 8 8 H 1.08001 * 119.99574 * 179.72693 * 7 2 1 9 9 N 1.37097 * 119.99941 * 359.72754 * 7 2 1 10 10 C 1.34777 * 120.00048 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99573 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00158 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47426 * 173.84568 * 12 10 9 14 14 C 1.47485 * 110.99693 * 294.35062 * 13 12 10 15 15 C 1.53517 * 87.92683 * 221.29327 * 14 13 12 16 16 C 1.47473 * 111.00172 * 198.37844 * 13 12 10 17 17 H 1.09001 * 113.47967 * 23.93331 * 16 13 12 18 18 C 1.53008 * 113.47472 * 253.46865 * 16 13 12 19 19 N 1.46496 * 109.47064 * 55.00003 * 18 16 13 20 20 C 1.34779 * 120.00092 * 180.02562 * 19 18 16 21 21 O 1.21282 * 119.99593 * 359.97438 * 20 19 18 22 22 C 1.50695 * 120.00024 * 180.02562 * 20 19 18 23 23 F 1.39899 * 109.47484 * 54.99575 * 22 20 19 24 24 C 1.53000 * 109.47154 * 294.99482 * 22 20 19 25 25 C 1.53001 * 109.47292 * 180.02562 * 24 22 20 26 26 C 1.52994 * 109.46853 * 60.00301 * 25 24 22 27 27 C 1.52999 * 109.47275 * 299.99782 * 26 25 24 28 28 C 1.52995 * 109.47094 * 60.00002 * 27 26 25 29 29 H 0.96996 * 120.00558 * 359.72489 * 1 2 3 30 30 H 0.97002 * 120.00064 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47323 * 293.84781 * 12 10 9 32 32 H 1.09004 * 109.47030 * 53.84729 * 12 10 9 33 33 H 1.08995 * 113.47618 * 336.05660 * 14 13 12 34 34 H 1.08998 * 113.47999 * 106.47326 * 14 13 12 35 35 H 1.09002 * 114.17226 * 139.67357 * 15 14 13 36 36 H 1.09000 * 114.16928 * 272.37477 * 15 14 13 37 37 H 1.08997 * 109.46941 * 175.00248 * 18 16 13 38 38 H 1.09000 * 109.46804 * 294.99932 * 18 16 13 39 39 H 0.97004 * 120.00062 * 0.02562 * 19 18 16 40 40 H 1.08998 * 109.47173 * 300.00354 * 24 22 20 41 41 H 1.09004 * 109.47327 * 60.00312 * 24 22 20 42 42 H 1.09000 * 109.46700 * 299.99925 * 25 24 22 43 43 H 1.09001 * 109.47137 * 180.02562 * 25 24 22 44 44 H 1.09005 * 109.46752 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.47775 * 60.00282 * 26 25 24 46 46 H 1.09007 * 109.46960 * 300.00259 * 27 26 25 47 47 H 1.08997 * 109.47278 * 180.02562 * 27 26 25 48 48 H 1.09001 * 109.47561 * 179.97438 * 28 27 26 49 49 H 1.09007 * 109.47007 * 60.00286 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.0967 1.6994 -1.2158 5 1 1.2829 2.7465 0.0067 6 1 3.1067 1.6937 1.2092 7 6 2.0089 -1.2033 -0.0057 8 1 3.0889 -1.2031 -0.0101 9 7 1.3235 -2.3906 -0.0056 10 6 1.9974 -3.5578 -0.0117 11 8 3.2103 -3.5576 -0.0167 12 6 1.2440 -4.8629 -0.0122 13 7 2.1911 -5.9750 -0.1677 14 6 2.8406 -5.9348 -1.4912 15 6 2.6775 -7.4599 -1.5557 16 6 1.4990 -7.2011 -0.6066 17 1 0.5592 -7.0079 -1.1238 18 6 1.3629 -8.2523 0.4969 19 7 0.7023 -7.6560 1.6605 20 6 0.4748 -8.4000 2.7611 21 8 0.8166 -9.5634 2.7877 22 6 -0.2052 -7.7868 3.9579 23 9 -1.4268 -7.2293 3.5654 24 6 0.6882 -6.6936 4.5475 25 6 -0.0019 -6.0714 5.7631 26 6 -0.2491 -7.1519 6.8176 27 6 -1.1426 -8.2451 6.2281 28 6 -0.4525 -8.8672 5.0126 29 1 -0.4851 0.8400 0.0040 30 1 0.3535 -2.3907 -0.0013 31 1 0.7064 -4.9725 0.9296 32 1 0.5339 -4.8722 -0.8391 33 1 2.2589 -5.4037 -2.2445 34 1 3.8804 -5.6096 -1.4549 35 1 2.3864 -7.8366 -2.5362 36 1 3.4996 -8.0162 -1.1052 37 1 0.7679 -9.0888 0.1303 38 1 2.3524 -8.6083 0.7835 39 1 0.4287 -6.7256 1.6390 40 1 1.6400 -7.1279 4.8533 41 1 0.8648 -5.9240 3.7961 42 1 -0.9538 -5.6371 5.4575 43 1 0.6344 -5.2923 6.1828 44 1 -0.7404 -6.7085 7.6838 45 1 0.7028 -7.5861 7.1232 46 1 -2.0946 -7.8108 5.9227 47 1 -1.3191 -9.0146 6.9795 48 1 -1.0888 -9.6464 4.5928 49 1 0.4995 -9.3015 5.3180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754497288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:13 Heat of formation + Delta-G solvation = -123.384492 kcal Electronic energy + Delta-G solvation = -31005.324431 eV Core-core repulsion = 26688.125603 eV Total energy + Delta-G solvation = -4317.198828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.04248 -41.73096 -40.71896 -39.56074 -38.31868 -36.01472 -35.71757 -33.35608 -32.32013 -31.87920 -31.76195 -29.33046 -27.56577 -25.38784 -25.20558 -23.93412 -23.54546 -21.69540 -21.12425 -20.81447 -20.56914 -19.92630 -19.00161 -17.87581 -17.51790 -17.34683 -16.98364 -16.56492 -16.43884 -16.31042 -15.94664 -15.74665 -15.64330 -15.52846 -15.14271 -14.88181 -14.51655 -14.46782 -14.17048 -13.82031 -13.64355 -13.55614 -13.33447 -13.24274 -13.15844 -12.92527 -12.87534 -12.81599 -12.46820 -12.39974 -12.14489 -12.12826 -11.94616 -11.78232 -11.63379 -11.53024 -11.48099 -11.10332 -10.76924 -10.34104 -10.20355 -10.03593 -9.82487 -8.48057 -5.96859 1.27516 1.38115 1.40934 1.51268 1.87796 2.02062 2.27091 2.78565 3.13085 3.17917 3.24429 3.34469 3.46359 3.55380 3.58678 3.74342 4.00337 4.07010 4.10012 4.13380 4.22238 4.23821 4.31772 4.33034 4.40313 4.42019 4.47866 4.56495 4.61641 4.78751 4.81526 4.86950 4.92544 4.98581 4.99568 5.11494 5.12309 5.15128 5.24811 5.26471 5.27638 5.37512 5.40221 5.46792 5.88959 6.05894 6.26168 6.57852 6.91601 7.10941 7.53391 8.08905 8.68859 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.003250 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.997370 B = 8612.130879 C =10817.341269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.571 5.571 10 C 0.440 3.560 11 O -0.616 6.616 12 C 0.020 3.980 13 N -0.461 5.461 14 C 0.006 3.994 15 C -0.113 4.113 16 C 0.013 3.987 17 H 0.103 0.897 18 C 0.140 3.860 19 N -0.707 5.707 20 C 0.497 3.503 21 O -0.556 6.556 22 C 0.111 3.889 23 F -0.198 7.198 24 C -0.138 4.138 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.120 4.120 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.405 0.595 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -17.060 6.594 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.208 5.208 10 C 0.227 3.773 11 O -0.502 6.502 12 C -0.112 4.112 13 N -0.185 5.185 14 C -0.123 4.123 15 C -0.151 4.151 16 C -0.096 4.096 17 H 0.121 0.879 18 C 0.017 3.983 19 N -0.358 5.358 20 C 0.281 3.719 21 O -0.435 6.435 22 C 0.090 3.910 23 F -0.178 7.178 24 C -0.176 4.176 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.158 4.158 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.242 0.758 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.507 -17.664 7.198 19.394 hybrid contribution -0.790 1.801 -0.906 2.165 sum -4.297 -15.863 6.292 17.598 Atomic orbital electron populations 1.69653 1.06773 1.29390 1.50080 1.25988 0.96490 1.02273 0.96201 0.85037 0.77827 0.76852 0.78937 1.19747 1.19474 1.19759 1.19598 0.92644 0.83994 1.50139 0.90398 1.41924 1.09264 1.04672 1.64971 1.20616 0.88231 0.85791 0.82634 1.90511 1.15608 1.87803 1.56288 1.22447 0.95006 0.90132 1.03630 1.68899 1.18895 1.01270 1.29396 1.23544 1.00885 0.97607 0.90241 1.23158 0.97082 0.94583 1.00312 1.23887 0.99039 0.91361 0.95351 0.87880 1.21454 0.97873 0.95185 0.83836 1.46026 1.59466 1.15355 1.14906 1.21134 0.79660 0.86422 0.84661 1.90687 1.53215 1.17271 1.82335 1.21262 0.81161 0.95775 0.92824 1.92878 1.45791 1.86951 1.92222 1.22148 0.98991 0.96772 0.99704 1.21532 1.01032 0.98660 0.94518 1.21597 1.00546 0.95660 0.97951 1.21557 0.98779 0.98838 0.96302 1.21898 1.03401 0.95836 0.94659 0.91261 0.77045 0.88047 0.90168 0.91704 0.91812 0.87381 0.88257 0.89650 0.91382 0.75838 0.89155 0.91070 0.91652 0.90320 0.90112 0.91035 0.91715 0.89330 0.90842 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.64 13.05 21.66 0.28 -48.36 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 3 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.51 5.29 -306.98 -1.62 -30.13 16 10 C 0.44 20.24 7.46 87.66 0.65 20.89 16 11 O -0.62 -33.27 14.98 -3.08 -0.05 -33.31 16 12 C 0.02 0.63 5.09 85.56 0.44 1.07 16 13 N -0.46 -13.72 5.74 -906.73 -5.21 -18.92 16 14 C 0.01 0.18 6.34 83.58 0.53 0.71 16 15 C -0.11 -2.17 8.00 30.94 0.25 -1.92 16 16 C 0.01 0.27 3.25 42.19 0.14 0.41 16 17 H 0.10 1.82 7.63 -2.39 -0.02 1.80 16 18 C 0.14 3.02 5.81 86.38 0.50 3.52 16 19 N -0.71 -16.91 5.42 -463.06 -2.51 -19.42 16 20 C 0.50 12.95 6.82 87.65 0.60 13.55 16 21 O -0.56 -17.14 15.98 -3.04 -0.05 -17.19 16 22 C 0.11 2.49 1.05 -11.54 -0.01 2.48 16 23 F -0.20 -4.81 15.76 44.97 0.71 -4.11 16 24 C -0.14 -2.90 4.95 30.59 0.15 -2.75 16 25 C -0.12 -2.17 5.80 30.59 0.18 -1.99 16 26 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 27 C -0.12 -1.79 5.80 30.59 0.18 -1.61 16 28 C -0.12 -2.32 4.30 30.59 0.13 -2.19 16 29 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.40 18.77 7.90 -92.71 -0.73 18.03 16 31 H 0.10 2.93 6.56 -2.39 -0.02 2.92 16 32 H 0.08 2.23 7.56 -2.38 -0.02 2.21 16 33 H 0.06 1.86 7.84 -2.39 -0.02 1.84 16 34 H 0.06 2.20 7.97 -2.39 -0.02 2.18 16 35 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.86 7.94 -2.39 -0.02 1.84 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.61 7.88 -2.39 -0.02 1.60 16 39 H 0.41 9.54 6.11 -92.71 -0.57 8.97 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.64 7.92 -2.38 -0.02 1.63 16 42 H 0.06 1.27 7.80 -2.39 -0.02 1.25 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.06 7.80 -2.38 -0.02 1.05 16 47 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.09 1.71 8.05 -2.38 -0.02 1.69 16 Total: -1.00 -69.31 392.44 -1.55 -70.86 By element: Atomic # 1 Polarization: 43.84 SS G_CDS: -0.33 Total: 43.51 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.19 Total: 12.76 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -9.06 Total: -116.84 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.09 Total: -50.50 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.71 Total: -4.11 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.31 -1.55 -70.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754497288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.523 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds