Wall clock time and date at job start Wed Apr 1 2020 00:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38943 * 119.69662 * 2 1 4 4 C 1.37669 * 120.65248 * 179.97438 * 3 2 1 5 5 C 1.39227 * 119.80946 * 0.04911 * 4 3 2 6 6 N 1.37476 * 133.18228 * 180.02562 * 5 4 3 7 7 H 0.97005 * 125.60442 * 359.97438 * 6 5 4 8 8 C 1.38150 * 108.78863 * 179.97438 * 6 5 4 9 9 C 1.47063 * 125.42812 * 179.97438 * 8 6 5 10 10 O 1.21646 * 119.99664 * 180.02562 * 9 8 6 11 11 N 1.34783 * 119.99982 * 0.02625 * 9 8 6 12 12 C 1.46501 * 119.99470 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.49786 * 35.07012 * 12 11 9 14 14 C 1.53188 * 109.50062 * 274.99611 * 12 11 9 15 15 N 1.46921 * 108.77837 * 185.41565 * 14 12 11 16 16 C 1.36936 * 120.63616 * 233.58937 * 15 14 12 17 17 H 1.07999 * 120.00035 * 151.83220 * 16 15 14 18 18 C 1.38817 * 119.99619 * 331.83511 * 16 15 14 19 19 N 1.31619 * 120.00182 * 343.07671 * 18 16 15 20 20 Si 1.86799 * 119.99737 * 163.07871 * 18 16 15 21 21 H 1.48498 * 109.47041 * 89.99896 * 20 18 16 22 22 H 1.48499 * 109.46965 * 210.00060 * 20 18 16 23 23 H 1.48502 * 109.47156 * 329.99510 * 20 18 16 24 24 C 1.46936 * 118.73447 * 53.61137 * 15 14 12 25 25 C 1.53192 * 108.77568 * 306.38995 * 24 15 14 26 26 C 1.53040 * 109.30874 * 54.63716 * 25 24 15 27 27 H 1.09006 * 109.46340 * 58.65514 * 26 25 24 28 28 C 1.53001 * 109.45753 * 178.61172 * 26 25 24 29 29 C 1.35866 * 109.13931 * 0.24180 * 8 6 5 30 30 C 1.40862 * 119.43071 * 359.97438 * 5 4 3 31 31 C 1.36447 * 119.69117 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47501 * 269.97786 * 1 2 3 33 33 H 1.08999 * 109.46939 * 29.97634 * 1 2 3 34 34 H 1.08999 * 109.46914 * 149.97180 * 1 2 3 35 35 H 1.08005 * 119.67040 * 0.02562 * 3 2 1 36 36 H 1.07998 * 120.09905 * 180.02562 * 4 3 2 37 37 H 0.96997 * 120.00093 * 0.27670 * 11 9 8 38 38 H 1.08998 * 109.58659 * 305.20844 * 14 12 11 39 39 H 1.09004 * 109.58238 * 65.63229 * 14 12 11 40 40 H 0.96991 * 120.00243 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58250 * 66.18131 * 24 15 14 42 42 H 1.09004 * 109.58325 * 186.46279 * 24 15 14 43 43 H 1.08997 * 109.49334 * 174.58642 * 25 24 15 44 44 H 1.09001 * 109.50013 * 294.65408 * 25 24 15 45 45 H 1.08996 * 109.47617 * 180.02562 * 28 26 25 46 46 H 1.09001 * 109.47400 * 300.06914 * 28 26 25 47 47 H 1.08997 * 109.47081 * 60.06825 * 28 26 25 48 48 H 1.08004 * 126.13227 * 179.75850 * 29 8 6 49 49 H 1.08001 * 120.08518 * 359.96888 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2069 0.0000 4 6 3.5718 1.2299 0.0005 5 6 4.2840 0.0336 0.0000 6 7 5.6266 -0.2620 0.0008 7 1 6.3477 0.3868 0.0016 8 6 5.7799 -1.6350 0.0003 9 6 7.0654 -2.3492 0.0003 10 8 7.0854 -3.5655 -0.0006 11 7 8.2214 -1.6562 0.0014 12 6 9.5020 -2.3678 0.0019 13 1 9.4119 -3.2794 -0.5888 14 6 9.8869 -2.7267 1.4406 15 7 11.2302 -3.3219 1.4363 16 6 11.4546 -4.5420 2.0161 17 1 12.2499 -5.1751 1.6513 18 6 10.6599 -4.9650 3.0728 19 7 9.9268 -4.0948 3.7343 20 14 10.6311 -6.7692 3.5558 21 1 11.6847 -7.0270 4.5701 22 1 9.3022 -7.1079 4.1253 23 1 10.8835 -7.6070 2.3559 24 6 12.3283 -2.5828 0.7984 25 6 11.9160 -2.2255 -0.6331 26 6 10.5848 -1.4712 -0.6030 27 1 10.6910 -0.5710 0.0026 28 6 10.1869 -1.0823 -2.0282 29 6 4.5537 -2.2202 -0.0062 30 6 3.5839 -1.1887 -0.0005 31 6 2.1828 -1.1853 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5143 35 1 1.6450 2.1363 0.0004 36 1 4.0977 2.1732 0.0009 37 1 8.2055 -0.6864 0.0062 38 1 9.8884 -1.8257 2.0540 39 1 9.1709 -3.4437 1.8423 40 1 9.3718 -4.3902 4.4729 41 1 12.5288 -1.6702 1.3596 42 1 13.2238 -3.2039 0.7788 43 1 12.6814 -1.5949 -1.0853 44 1 11.8043 -3.1384 -1.2181 45 1 9.2391 -0.5447 -2.0071 46 1 10.9580 -0.4438 -2.4593 47 1 10.0800 -1.9822 -2.6339 48 1 4.3547 -3.2817 -0.0118 49 1 1.6392 -2.1185 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967676821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:17 Heat of formation + Delta-G solvation = 32.427625 kcal Electronic energy + Delta-G solvation = -29592.620611 eV Core-core repulsion = 25712.947528 eV Total energy + Delta-G solvation = -3879.673083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.63127 -39.50368 -37.81459 -37.12374 -34.44524 -33.23778 -32.39306 -31.55807 -30.98750 -29.43665 -28.65813 -27.43430 -26.50756 -24.29278 -23.83317 -22.24624 -21.70745 -21.12117 -20.62327 -19.97137 -19.44836 -18.28602 -17.12528 -16.82897 -15.73175 -15.21571 -15.19992 -15.04836 -14.73999 -14.19783 -14.08122 -13.89158 -13.78455 -13.70220 -13.57555 -13.41536 -13.34645 -13.05564 -12.90641 -12.45089 -12.32666 -12.07916 -11.79116 -11.69305 -11.64089 -11.27097 -11.03491 -10.91859 -10.71324 -10.68752 -10.49941 -10.19955 -10.09877 -9.97567 -9.93821 -9.65874 -9.52418 -8.67871 -8.43760 -8.21180 -7.84465 -6.66967 -5.76453 -3.20102 0.72148 1.45326 2.14927 2.82692 3.31933 3.43056 3.50319 3.52703 3.55499 3.74723 4.50589 4.53891 4.72742 4.79450 4.93258 5.05833 5.11561 5.19132 5.22154 5.27086 5.34547 5.44075 5.47527 5.52594 5.55478 5.58810 5.72679 5.84554 5.89398 5.92809 5.96050 5.97122 6.05878 6.17709 6.24583 6.32435 6.40549 6.43262 6.45959 6.54036 6.61308 6.66705 6.71020 6.83002 6.92784 6.95737 7.22110 7.29255 7.68858 7.75898 7.83986 8.42478 8.48291 9.21831 9.85750 10.40405 11.31717 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.002850 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.909534 B = 9823.152900 C =11323.039805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.128 4.128 5 C 0.106 3.894 6 N -0.578 5.578 7 H 0.416 0.584 8 C 0.031 3.969 9 C 0.577 3.423 10 O -0.510 6.510 11 N -0.714 5.714 12 C 0.124 3.876 13 H 0.086 0.914 14 C 0.166 3.834 15 N -0.587 5.587 16 C -0.258 4.258 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.899 5.899 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.141 3.859 25 C -0.125 4.125 26 C -0.092 4.092 27 H 0.066 0.934 28 C -0.144 4.144 29 C -0.116 4.116 30 C -0.112 4.112 31 C -0.062 4.062 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.386 0.614 38 H 0.016 0.984 39 H 0.096 0.904 40 H 0.254 0.746 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.156 0.844 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 13.777 -10.555 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.149 4.149 5 C -0.004 4.004 6 N -0.182 5.182 7 H 0.254 0.746 8 C -0.078 4.078 9 C 0.361 3.639 10 O -0.385 6.385 11 N -0.364 5.364 12 C 0.019 3.981 13 H 0.104 0.896 14 C 0.039 3.961 15 N -0.310 5.310 16 C -0.387 4.387 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.543 5.543 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.015 3.985 25 C -0.165 4.165 26 C -0.111 4.111 27 H 0.085 0.915 28 C -0.201 4.201 29 C -0.143 4.143 30 C -0.117 4.117 31 C -0.081 4.081 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.219 0.781 38 H 0.035 0.965 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.173 0.827 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.848 12.853 -10.402 20.940 hybrid contribution 0.339 0.073 0.405 0.534 sum -12.509 12.926 -9.997 20.579 Atomic orbital electron populations 1.20713 0.91213 1.02461 1.02069 1.19351 0.95995 0.92818 1.04011 1.20711 0.92830 0.97539 0.99949 1.20026 0.93819 0.94787 1.06268 1.18321 0.83038 0.95544 1.03537 1.41950 1.06028 1.06154 1.64115 0.74579 1.20430 0.95659 0.81942 1.09804 1.17152 0.82037 0.87072 0.77597 1.90899 1.86360 1.12258 1.48957 1.45988 1.06403 1.09248 1.74779 1.22091 0.79522 0.94514 1.01953 0.89613 1.21099 0.88399 0.97682 0.88907 1.43945 1.02071 1.19705 1.65259 1.19123 1.17093 0.92356 1.10132 0.91606 1.25051 1.00526 0.97991 0.95662 1.69999 1.30867 1.32308 1.21082 0.86302 0.77051 0.85198 0.78250 1.21444 1.21450 1.20358 1.20971 0.91938 0.95126 0.90449 1.22066 0.94940 0.99414 1.00050 1.21313 0.95854 0.98420 0.95547 0.91543 1.21853 1.00276 1.01088 0.96932 1.20910 0.89267 0.99426 1.04660 1.18189 0.93549 0.92311 1.07606 1.20262 0.91503 0.97855 0.98459 0.91537 0.91863 0.91757 0.85765 0.86073 0.78099 0.96548 0.88602 0.93608 0.96460 0.92516 0.92557 0.92001 0.93504 0.93029 0.92783 0.82674 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.99 36.00 0.36 -0.38 16 2 C -0.12 -1.16 5.84 -105.01 -0.61 -1.77 16 3 C -0.09 -0.83 9.66 -39.53 -0.38 -1.21 16 4 C -0.13 -1.27 10.08 -39.42 -0.40 -1.66 16 5 C 0.11 1.28 7.25 -83.97 -0.61 0.67 16 6 N -0.58 -6.75 6.07 -7.35 -0.04 -6.79 16 7 H 0.42 3.61 8.12 -40.82 -0.33 3.28 16 8 C 0.03 0.47 6.97 -82.29 -0.57 -0.11 16 9 C 0.58 10.26 7.77 -12.68 -0.10 10.16 16 10 O -0.51 -11.38 16.50 5.24 0.09 -11.29 16 11 N -0.71 -11.32 4.36 -54.88 -0.24 -11.56 16 12 C 0.12 2.34 2.06 -67.81 -0.14 2.20 16 13 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 14 C 0.17 4.00 4.88 -3.72 -0.02 3.98 16 15 N -0.59 -14.74 2.99 -172.31 -0.52 -15.26 16 16 C -0.26 -7.20 9.58 -15.06 -0.14 -7.34 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 18 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 19 N -0.90 -26.82 11.20 55.49 0.62 -26.20 16 20 Si 0.90 22.56 29.59 -169.99 -5.03 17.53 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.14 2.88 6.52 -3.71 -0.02 2.86 16 25 C -0.12 -2.06 5.36 -26.61 -0.14 -2.20 16 26 C -0.09 -1.42 2.27 -90.58 -0.21 -1.63 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.14 -1.81 9.02 37.16 0.34 -1.47 16 29 C -0.12 -1.71 10.53 -39.16 -0.41 -2.12 16 30 C -0.11 -1.47 6.16 -106.93 -0.66 -2.13 16 31 C -0.06 -0.69 9.68 -39.53 -0.38 -1.08 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 35 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.39 4.73 7.37 -40.82 -0.30 4.42 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 2.74 6.06 -51.93 -0.31 2.42 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.53 7.36 -51.93 -0.38 0.14 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.16 2.23 8.06 -52.48 -0.42 1.80 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -33.65 394.71 -10.96 -44.61 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.60 Total: 6.13 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.19 Total: -3.12 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.18 Total: -59.81 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.65 -10.96 -44.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967676821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.035 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds