Wall clock time and date at job start Wed Apr 1 2020 00:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46842 * 299.99743 * 3 2 1 6 6 H 1.48493 * 109.47536 * 59.99124 * 3 2 1 7 7 C 1.38819 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99765 * 162.84021 * 7 2 1 9 9 N 1.36930 * 119.99891 * 342.83862 * 7 2 1 10 10 C 1.46850 * 120.38813 * 330.68731 * 9 7 2 11 11 C 1.53349 * 108.81458 * 236.88640 * 10 9 7 12 12 C 1.53186 * 108.76583 * 308.68287 * 11 10 9 13 13 C 1.52843 * 117.65818 * 269.97222 * 12 11 10 14 14 C 1.52816 * 117.71399 * 201.11716 * 12 11 10 15 15 H 1.09007 * 117.52528 * 0.14815 * 14 12 11 16 16 N 1.46499 * 117.50384 * 215.10022 * 14 12 11 17 17 C 1.34777 * 120.00167 * 155.02402 * 16 14 12 18 18 O 1.21284 * 119.99814 * 359.97438 * 17 16 14 19 19 C 1.50698 * 120.00101 * 179.72530 * 17 16 14 20 20 H 1.08998 * 110.71731 * 298.35384 * 19 17 16 21 21 C 1.54416 * 110.81154 * 174.76270 * 19 17 16 22 22 C 1.51059 * 105.14763 * 215.61696 * 21 19 17 23 23 C 1.38623 * 131.51524 * 197.05094 * 22 21 19 24 24 C 1.38215 * 119.09813 * 179.97438 * 23 22 21 25 25 N 1.31882 * 120.70484 * 359.97438 * 24 23 22 26 26 C 1.31831 * 121.79333 * 0.03075 * 25 24 23 27 27 C 1.38339 * 120.75458 * 359.94360 * 26 25 24 28 28 C 1.51185 * 131.27193 * 180.02562 * 27 26 25 29 29 C 1.53181 * 115.07865 * 55.44920 * 12 11 10 30 30 C 1.46845 * 120.38250 * 150.66962 * 9 7 2 31 31 H 0.96993 * 119.99916 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.57863 * 117.08410 * 10 9 7 33 33 H 1.08997 * 109.68649 * 356.74998 * 10 9 7 34 34 H 1.09000 * 109.58939 * 188.90051 * 11 10 9 35 35 H 1.08999 * 109.58830 * 68.46738 * 11 10 9 36 36 H 1.08999 * 117.50420 * 144.81011 * 13 12 11 37 37 H 1.09003 * 117.50488 * 359.76720 * 13 12 11 38 38 H 0.96993 * 119.99933 * 335.02413 * 16 14 12 39 39 H 1.09001 * 110.30396 * 334.52980 * 21 19 17 40 40 H 1.08997 * 110.30919 * 96.69291 * 21 19 17 41 41 H 1.08005 * 120.44912 * 359.96976 * 23 22 21 42 42 H 1.07996 * 119.64250 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.62510 * 180.02562 * 26 25 24 44 44 H 1.09006 * 110.29529 * 44.03607 * 28 27 26 45 45 H 1.08998 * 110.37690 * 281.94380 * 28 27 26 46 46 H 1.08994 * 109.58943 * 64.34380 * 29 12 11 47 47 H 1.09000 * 109.59223 * 184.77546 * 29 12 11 48 48 H 1.09002 * 109.58028 * 242.92140 * 30 9 7 49 49 H 1.09003 * 109.57851 * 3.31851 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2022 0.0005 8 1 3.0542 -1.2232 -0.2754 9 7 1.3713 -2.3615 0.3510 10 6 0.2478 -2.3339 1.2963 11 6 0.5712 -3.2591 2.4757 12 6 0.9910 -4.6269 1.9285 13 6 -0.1045 -5.6697 1.7084 14 6 0.8848 -5.8300 2.8647 15 1 0.5129 -5.6518 3.8738 16 7 1.9049 -6.8744 2.7425 17 6 2.1868 -7.6675 3.7951 18 8 1.5964 -7.5162 4.8437 19 6 3.2317 -8.7459 3.6676 20 1 2.9453 -9.4723 2.9070 21 6 3.4765 -9.4362 5.0270 22 6 4.9535 -9.7520 5.0490 23 6 5.6963 -10.6182 5.8362 24 6 7.0606 -10.7078 5.6339 25 7 7.6529 -9.9818 4.7058 26 6 6.9774 -9.1483 3.9398 27 6 5.6089 -9.0058 4.0841 28 6 4.6136 -8.1371 3.3490 29 6 2.1560 -4.5986 0.9342 30 6 1.8012 -3.6467 -0.2145 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6576 -2.6802 0.7978 33 1 0.0987 -1.3172 1.6597 34 1 -0.3122 -3.3725 3.1041 35 1 1.3864 -2.8338 3.0610 36 1 0.0036 -6.3412 0.8566 37 1 -1.1272 -5.3856 1.9565 38 1 2.3773 -6.9952 1.9041 39 1 3.2216 -8.7622 5.8448 40 1 2.8923 -10.3538 5.0959 41 1 5.2154 -11.2149 6.5972 42 1 7.6477 -11.3801 6.2419 43 1 7.4980 -8.5709 3.1901 44 1 4.8034 -8.1696 2.2760 45 1 4.6662 -7.1103 3.7107 46 1 3.0566 -4.2456 1.4365 47 1 2.3241 -5.6007 0.5396 48 1 0.9921 -4.0743 -0.8066 49 1 2.6767 -3.4935 -0.8456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016830395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:15 Heat of formation + Delta-G solvation = 40.765222 kcal Electronic energy + Delta-G solvation = -29121.959247 eV Core-core repulsion = 25242.647709 eV Total energy + Delta-G solvation = -3879.311537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.28739 -39.98795 -38.60729 -36.56499 -35.51585 -33.27787 -32.24704 -31.63756 -30.43744 -29.98229 -28.35980 -28.03214 -24.84969 -24.37310 -22.62600 -22.48091 -22.07776 -21.53525 -20.71297 -20.14473 -18.27859 -17.68326 -17.06299 -16.66326 -16.36214 -16.20046 -15.52795 -15.18481 -14.86204 -14.67952 -14.16587 -14.10723 -13.88307 -13.56474 -13.43479 -13.38338 -13.29843 -13.17670 -12.79396 -12.52676 -12.28930 -11.99084 -11.74769 -11.72210 -11.66318 -11.60034 -11.35781 -11.00370 -10.76634 -10.46654 -10.34970 -10.10582 -9.98754 -9.82803 -9.72879 -9.70231 -9.65940 -9.39639 -9.23922 -8.52891 -8.48066 -6.66455 -5.81365 -3.25375 0.76405 0.91108 2.40241 2.92729 3.35146 3.43576 3.44021 3.45407 3.79831 3.96254 4.13246 4.19372 4.45206 4.47502 4.50412 4.59453 4.69717 4.88046 4.93233 5.05244 5.08856 5.09499 5.09969 5.27919 5.33997 5.37121 5.44807 5.47182 5.53871 5.60088 5.66946 5.71512 5.81632 5.98777 6.01377 6.02776 6.04790 6.25048 6.34814 6.39213 6.50244 6.57744 6.60508 6.66132 6.79490 6.92630 7.33588 7.38906 7.64140 7.65029 7.77533 8.07183 8.44219 9.19363 9.82657 10.39232 11.26346 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016807 B = 0.002234 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.599271 B =12532.981216 C =13601.600894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.106 4.106 12 C -0.095 4.095 13 C -0.182 4.182 14 C 0.067 3.933 15 H 0.132 0.868 16 N -0.692 5.692 17 C 0.525 3.475 18 O -0.539 6.539 19 C -0.110 4.110 20 H 0.111 0.889 21 C -0.069 4.069 22 C -0.050 4.050 23 C -0.160 4.160 24 C 0.096 3.904 25 N -0.485 5.485 26 C 0.115 3.885 27 C -0.148 4.148 28 C -0.069 4.069 29 C -0.097 4.097 30 C 0.149 3.851 31 H 0.253 0.747 32 H 0.018 0.982 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.019 0.981 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 -21.821 7.894 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.096 4.096 13 C -0.220 4.220 14 C -0.039 4.039 15 H 0.150 0.850 16 N -0.341 5.341 17 C 0.311 3.689 18 O -0.416 6.416 19 C -0.132 4.132 20 H 0.129 0.871 21 C -0.106 4.106 22 C -0.058 4.058 23 C -0.180 4.180 24 C -0.061 4.061 25 N -0.193 5.193 26 C -0.042 4.042 27 C -0.150 4.150 28 C -0.107 4.107 29 C -0.136 4.136 30 C 0.023 3.977 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.237 0.763 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.175 0.825 43 H 0.173 0.827 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.037 0.963 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.981 -21.644 8.520 24.592 hybrid contribution -0.368 0.783 -0.329 0.926 sum 7.613 -20.861 8.191 23.669 Atomic orbital electron populations 1.70033 1.05287 1.25434 1.53777 1.25071 0.95271 0.98477 1.00805 0.86252 0.79412 0.83987 0.77292 1.20247 1.21727 1.21536 1.19215 0.92588 0.84906 1.41565 0.91776 1.43974 1.37480 1.01661 1.48039 1.20760 0.88746 0.98591 0.87195 1.21886 0.99682 0.93143 0.99831 1.21956 0.97918 0.91189 0.98584 1.23527 0.96234 1.02690 0.99592 1.21938 0.93317 0.91410 0.97221 0.85049 1.45393 1.40000 1.33912 1.14761 1.20197 0.83122 0.81919 0.83666 1.90699 1.52032 1.70617 1.28223 1.22015 0.94239 0.97012 0.99885 0.87104 1.20942 0.90619 1.01592 0.97458 1.20897 0.96665 0.94121 0.94136 1.21645 0.95111 1.00165 1.01043 1.22725 0.91967 0.96602 0.94786 1.67740 1.39985 1.06195 1.05383 1.22270 0.89915 0.94971 0.97046 1.21466 0.95466 0.99180 0.98911 1.20938 0.89881 0.98919 1.00964 1.21627 0.96171 0.98603 0.97227 1.20840 0.97416 0.87085 0.92387 0.93657 0.96366 0.89166 0.93022 0.92118 0.89053 0.88323 0.76318 0.87630 0.89549 0.84787 0.82511 0.82719 0.89202 0.89002 0.91740 0.93659 0.96333 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.21 55.49 0.62 -25.09 16 2 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.76 9.54 -15.06 -0.14 -6.91 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.21 2.93 -172.25 -0.51 -14.72 16 10 C 0.17 3.98 5.39 -3.67 -0.02 3.96 16 11 C -0.11 -1.95 5.83 -26.45 -0.15 -2.11 16 12 C -0.09 -1.48 1.94 -154.49 -0.30 -1.78 16 13 C -0.18 -2.49 9.86 -26.80 -0.26 -2.75 16 14 C 0.07 0.91 6.14 -68.01 -0.42 0.49 16 15 H 0.13 1.98 7.40 -51.92 -0.38 1.60 16 16 N -0.69 -7.66 5.29 -53.88 -0.29 -7.94 16 17 C 0.53 6.03 7.06 -10.99 -0.08 5.95 16 18 O -0.54 -8.25 15.13 5.55 0.08 -8.17 16 19 C -0.11 -0.89 3.47 -90.33 -0.31 -1.21 16 20 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 21 C -0.07 -0.59 6.06 -26.96 -0.16 -0.75 16 22 C -0.05 -0.44 6.20 -104.22 -0.65 -1.08 16 23 C -0.16 -1.24 10.12 -39.45 -0.40 -1.64 16 24 C 0.10 0.79 11.19 -17.54 -0.20 0.59 16 25 N -0.48 -4.94 10.36 -13.22 -0.14 -5.08 16 26 C 0.11 1.05 11.19 -17.51 -0.20 0.85 16 27 C -0.15 -1.30 6.19 -104.26 -0.64 -1.94 16 28 C -0.07 -0.52 6.26 -26.95 -0.17 -0.69 16 29 C -0.10 -1.50 5.37 -26.46 -0.14 -1.64 16 30 C 0.15 2.94 6.51 -3.67 -0.02 2.92 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 34 H 0.05 0.87 8.10 -51.93 -0.42 0.44 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.40 3.58 7.11 -40.82 -0.29 3.29 16 39 H 0.11 1.08 7.07 -51.93 -0.37 0.72 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.79 7.88 -51.93 -0.41 0.38 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.04 0.56 6.75 -51.93 -0.35 0.20 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -32.12 390.89 -11.28 -43.40 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.56 Total: 3.12 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -4.36 Total: -7.75 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.31 Total: -52.83 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.12 -11.28 -43.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016830395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.168 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds