Wall clock time and date at job start Wed Apr 1 2020 00:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48494 * 109.46727 * 269.99573 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99328 * 3 2 1 6 6 H 1.48499 * 109.47057 * 149.99391 * 3 2 1 7 7 C 1.38812 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99866 * 197.87728 * 7 2 1 9 9 N 1.36934 * 120.00092 * 17.87587 * 7 2 1 10 10 C 1.46850 * 120.38591 * 208.94186 * 9 7 2 11 11 C 1.53354 * 108.80925 * 236.88668 * 10 9 7 12 12 C 1.53178 * 108.77021 * 308.68486 * 11 10 9 13 13 C 1.52851 * 117.65584 * 269.97176 * 12 11 10 14 14 C 1.52825 * 117.71356 * 201.11956 * 12 11 10 15 15 H 1.09004 * 117.50128 * 0.10588 * 14 12 11 16 16 N 1.46496 * 117.50141 * 215.09929 * 14 12 11 17 17 C 1.34775 * 120.00339 * 154.99927 * 16 14 12 18 18 O 1.21283 * 119.99695 * 359.97438 * 17 16 14 19 19 C 1.50703 * 120.00256 * 179.97438 * 17 16 14 20 20 H 1.08996 * 110.87347 * 56.51105 * 19 17 16 21 21 C 1.54415 * 110.81042 * 180.02562 * 19 17 16 22 22 C 1.51054 * 105.15139 * 144.37806 * 21 19 17 23 23 C 1.38629 * 131.51530 * 162.94173 * 22 21 19 24 24 C 1.38214 * 119.09474 * 180.02562 * 23 22 21 25 25 N 1.31885 * 120.71052 * 0.02562 * 24 23 22 26 26 C 1.31833 * 121.78692 * 359.97435 * 25 24 23 27 27 C 1.38339 * 120.75801 * 0.25205 * 26 25 24 28 28 C 1.51193 * 131.26816 * 180.32918 * 27 26 25 29 29 C 1.53183 * 115.08076 * 55.44671 * 12 11 10 30 30 C 1.46839 * 120.38238 * 28.92132 * 9 7 2 31 31 H 0.96993 * 120.00116 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58087 * 117.08998 * 10 9 7 33 33 H 1.08997 * 109.58081 * 356.68158 * 10 9 7 34 34 H 1.09005 * 109.58504 * 188.89960 * 11 10 9 35 35 H 1.09001 * 109.58757 * 68.47015 * 11 10 9 36 36 H 1.08999 * 117.50495 * 144.81601 * 13 12 11 37 37 H 1.09001 * 117.50319 * 359.76566 * 13 12 11 38 38 H 0.97001 * 120.00170 * 334.99446 * 16 14 12 39 39 H 1.08996 * 110.30701 * 25.45624 * 21 19 17 40 40 H 1.09005 * 110.30153 * 263.29580 * 21 19 17 41 41 H 1.08000 * 120.45542 * 0.02562 * 23 22 21 42 42 H 1.07995 * 119.64128 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.62446 * 179.97438 * 26 25 24 44 44 H 1.08997 * 110.49322 * 77.69822 * 28 27 26 45 45 H 1.08998 * 110.23736 * 315.56176 * 28 27 26 46 46 H 1.08994 * 109.58747 * 64.34696 * 29 12 11 47 47 H 1.08997 * 109.58788 * 184.77848 * 29 12 11 48 48 H 1.09003 * 109.58182 * 242.91666 * 30 9 7 49 49 H 1.09003 * 109.57890 * 3.18706 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0512 -1.2245 0.2877 9 7 1.3752 -2.3596 -0.3630 10 6 1.8047 -3.6488 0.1937 11 6 2.1671 -4.5901 -0.9614 12 6 1.0072 -4.6120 -1.9618 13 6 -0.0874 -5.6588 -1.7561 14 6 0.9080 -5.8073 -2.9088 15 1 1.6683 -6.5835 -2.8211 16 7 0.4147 -5.5565 -4.2652 17 6 0.7575 -6.3855 -5.2711 18 8 1.4748 -7.3389 -5.0533 19 6 0.2495 -6.1278 -6.6663 20 1 0.5278 -5.1292 -7.0027 21 6 0.7689 -7.2021 -7.6464 22 6 -0.3610 -7.4239 -8.6241 23 6 -0.3888 -8.0162 -9.8772 24 6 -1.5872 -8.0829 -10.5626 25 7 -2.6921 -7.5910 -10.0367 26 6 -2.7016 -7.0213 -8.8479 27 6 -1.5393 -6.9142 -8.1054 28 6 -1.2804 -6.3236 -6.7379 29 6 0.5875 -3.2404 -2.4994 30 6 0.2566 -2.3259 -1.3136 31 1 -0.4850 0.8400 -0.0004 32 1 0.9933 -4.0829 0.7779 33 1 2.6766 -3.4995 0.8305 34 1 2.3352 -5.5953 -0.5747 35 1 3.0695 -4.2309 -1.4561 36 1 -1.1093 -5.3745 -2.0069 37 1 0.0178 -6.3375 -0.9096 38 1 -0.1588 -4.7938 -4.4395 39 1 0.9932 -8.1251 -7.1118 40 1 1.6553 -6.8412 -8.1681 41 1 0.5136 -8.4200 -10.3120 42 1 -1.6190 -8.5427 -11.5392 43 1 -3.6265 -6.6297 -8.4509 44 1 -1.6108 -7.0090 -5.9575 45 1 -1.7894 -5.3649 -6.6387 46 1 1.4047 -2.8086 -3.0770 47 1 -0.2926 -3.3500 -3.1330 48 1 -0.6507 -2.6780 -0.8227 49 1 0.1082 -1.3055 -1.6671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016830396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:18 Heat of formation + Delta-G solvation = 40.614005 kcal Electronic energy + Delta-G solvation = -29033.743180 eV Core-core repulsion = 25154.425086 eV Total energy + Delta-G solvation = -3879.318094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.28152 -39.97584 -38.60610 -36.55271 -35.51129 -33.29261 -32.25926 -31.55156 -30.34467 -30.15497 -28.32906 -28.03856 -24.83925 -24.36873 -22.63313 -22.47012 -22.08230 -21.55527 -20.69555 -20.11349 -18.27097 -17.67562 -17.07297 -16.70416 -16.38193 -16.08791 -15.55300 -15.17012 -14.83358 -14.66686 -14.23756 -14.11597 -13.85827 -13.64509 -13.49460 -13.36672 -13.28716 -13.06314 -12.73068 -12.53075 -12.31801 -11.96299 -11.74938 -11.72005 -11.69136 -11.54274 -11.40155 -11.00631 -10.77288 -10.53087 -10.32595 -10.10440 -9.97080 -9.82392 -9.75171 -9.70682 -9.62698 -9.40397 -9.24404 -8.53570 -8.48306 -6.67840 -5.82595 -3.25667 0.75925 0.91031 2.41351 2.95205 3.34926 3.42447 3.43421 3.43653 3.81722 3.97712 4.12576 4.18742 4.46703 4.46913 4.52526 4.59575 4.70141 4.90322 4.94070 5.05807 5.08859 5.09784 5.10351 5.28285 5.34768 5.35478 5.46695 5.47364 5.53917 5.59546 5.67160 5.72896 5.82298 5.99102 6.00519 6.05434 6.06842 6.23964 6.34392 6.39952 6.51005 6.52981 6.60233 6.66306 6.79284 6.96122 7.28910 7.41547 7.60536 7.63399 7.76776 8.09011 8.42970 9.18406 9.81848 10.38433 11.25174 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.002126 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.717059 B =13166.339456 C =13867.254431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.096 4.096 13 C -0.182 4.182 14 C 0.067 3.933 15 H 0.131 0.869 16 N -0.691 5.691 17 C 0.526 3.474 18 O -0.541 6.541 19 C -0.111 4.111 20 H 0.111 0.889 21 C -0.071 4.071 22 C -0.049 4.049 23 C -0.160 4.160 24 C 0.096 3.904 25 N -0.485 5.485 26 C 0.114 3.886 27 C -0.149 4.149 28 C -0.067 4.067 29 C -0.104 4.104 30 C 0.173 3.827 31 H 0.254 0.746 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.403 0.597 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.018 0.982 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 -14.690 -16.844 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.138 4.138 12 C -0.097 4.097 13 C -0.220 4.220 14 C -0.039 4.039 15 H 0.149 0.851 16 N -0.340 5.340 17 C 0.312 3.688 18 O -0.418 6.418 19 C -0.133 4.133 20 H 0.129 0.871 21 C -0.108 4.108 22 C -0.057 4.057 23 C -0.180 4.180 24 C -0.061 4.061 25 N -0.194 5.194 26 C -0.042 4.042 27 C -0.151 4.151 28 C -0.105 4.105 29 C -0.144 4.144 30 C 0.047 3.953 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.239 0.761 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.175 0.825 43 H 0.172 0.828 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.204 -15.278 -17.141 23.184 hybrid contribution 0.823 1.294 0.341 1.571 sum -2.381 -13.984 -16.800 21.988 Atomic orbital electron populations 1.70030 1.05261 1.25511 1.53813 1.25049 0.95263 0.98449 1.00887 0.86304 0.79189 0.83686 0.77695 1.21462 1.21783 1.20414 1.19211 0.92892 0.85011 1.41107 0.91734 1.43971 1.37869 1.01584 1.47727 1.20860 0.97456 0.86902 0.92533 1.21696 0.95913 0.99309 0.96868 1.21953 0.98228 0.91129 0.98416 1.23526 0.95882 1.03035 0.99586 1.21904 1.01073 1.02538 0.78339 0.85131 1.45394 1.51421 1.29595 1.07565 1.20173 0.80276 0.82295 0.86050 1.90686 1.37359 1.29653 1.84074 1.22031 0.96315 1.01914 0.93008 0.87056 1.20964 0.95805 1.00217 0.93779 1.20902 0.96199 0.94493 0.94091 1.21651 1.00092 1.01573 0.94639 1.22723 0.87712 0.96013 0.99617 1.67740 1.30171 1.09579 1.11862 1.22256 0.97092 0.95188 0.89713 1.21472 0.94942 1.01105 0.97570 1.20917 0.93817 1.02038 0.93696 1.21807 0.99061 0.93594 0.99893 1.20752 0.88892 0.98627 0.87055 0.93640 0.96246 0.92648 0.92860 0.91825 0.88891 0.88474 0.76137 0.87519 0.89519 0.84764 0.82505 0.82772 0.89194 0.89188 0.92061 0.93799 0.96412 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.23 55.49 0.62 -24.84 16 2 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 3 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.75 9.54 -15.06 -0.14 -6.89 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.20 2.94 -172.25 -0.51 -14.71 16 10 C 0.15 3.01 6.52 -3.67 -0.02 2.99 16 11 C -0.10 -1.64 5.83 -26.46 -0.15 -1.80 16 12 C -0.10 -1.49 1.94 -154.49 -0.30 -1.79 16 13 C -0.18 -2.47 9.86 -26.79 -0.26 -2.74 16 14 C 0.07 0.91 6.14 -68.01 -0.42 0.49 16 15 H 0.13 1.91 7.40 -51.93 -0.38 1.53 16 16 N -0.69 -7.98 5.34 -53.88 -0.29 -8.27 16 17 C 0.53 6.20 7.04 -10.98 -0.08 6.12 16 18 O -0.54 -8.29 15.07 5.56 0.08 -8.21 16 19 C -0.11 -0.95 3.47 -90.30 -0.31 -1.27 16 20 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.07 -0.62 6.10 -26.97 -0.16 -0.78 16 22 C -0.05 -0.43 6.21 -104.22 -0.65 -1.08 16 23 C -0.16 -1.25 10.12 -39.45 -0.40 -1.65 16 24 C 0.10 0.79 11.19 -17.54 -0.20 0.59 16 25 N -0.49 -4.90 10.36 -13.22 -0.14 -5.04 16 26 C 0.11 1.03 11.19 -17.51 -0.20 0.83 16 27 C -0.15 -1.30 6.18 -104.26 -0.64 -1.95 16 28 C -0.07 -0.50 6.31 -26.91 -0.17 -0.67 16 29 C -0.10 -1.80 5.37 -26.45 -0.14 -1.94 16 30 C 0.17 3.88 5.41 -3.67 -0.02 3.86 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 34 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.40 3.98 7.12 -40.82 -0.29 3.69 16 39 H 0.11 1.10 6.98 -51.93 -0.36 0.74 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.09 0.72 7.88 -51.93 -0.41 0.31 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.29 5.93 -51.93 -0.31 1.98 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -31.79 390.87 -11.28 -43.07 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.56 Total: 3.57 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -4.36 Total: -7.69 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.31 Total: -52.85 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.21 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.79 -11.28 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016830396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.689 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds