Wall clock time and date at job start Wed Apr 1 2020 00:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48503 * 109.46849 * 239.99800 * 3 2 1 5 5 H 1.48500 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47570 * 119.99817 * 3 2 1 7 7 C 1.38812 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00054 * 197.83856 * 7 2 1 9 9 N 1.36934 * 119.99913 * 17.84389 * 7 2 1 10 10 C 1.46848 * 120.38267 * 208.89466 * 9 7 2 11 11 C 1.53349 * 108.81495 * 236.92549 * 10 9 7 12 12 C 1.53183 * 108.76795 * 308.68613 * 11 10 9 13 13 C 1.52850 * 117.65357 * 269.97148 * 12 11 10 14 14 C 1.52814 * 117.71599 * 201.11511 * 12 11 10 15 15 H 1.08994 * 117.52695 * 215.08542 * 14 12 11 16 16 N 1.46506 * 117.50041 * 0.13741 * 14 12 11 17 17 C 1.34772 * 119.99949 * 204.97469 * 16 14 12 18 18 O 1.21281 * 120.00395 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99988 * 179.97438 * 17 16 14 20 20 H 1.09001 * 110.87597 * 297.97035 * 19 17 16 21 21 C 1.54415 * 110.80915 * 174.48414 * 19 17 16 22 22 C 1.51056 * 105.15058 * 215.61723 * 21 19 17 23 23 C 1.38630 * 131.52086 * 197.04642 * 22 21 19 24 24 C 1.38213 * 119.09710 * 180.02562 * 23 22 21 25 25 N 1.31885 * 120.71049 * 359.96506 * 24 23 22 26 26 C 1.31832 * 121.78923 * 0.02562 * 25 24 23 27 27 C 1.38342 * 120.75301 * 0.02562 * 26 25 24 28 28 C 1.51183 * 131.26593 * 179.97438 * 27 26 25 29 29 C 1.53180 * 115.07712 * 55.44199 * 12 11 10 30 30 C 1.46841 * 120.38583 * 28.91234 * 9 7 2 31 31 H 0.96997 * 120.00695 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.58167 * 117.12444 * 10 9 7 33 33 H 1.09000 * 109.58102 * 356.72356 * 10 9 7 34 34 H 1.08994 * 109.58910 * 188.89666 * 11 10 9 35 35 H 1.09006 * 109.58498 * 68.46522 * 11 10 9 36 36 H 1.08995 * 117.49981 * 144.81247 * 13 12 11 37 37 H 1.08996 * 117.50241 * 359.76203 * 13 12 11 38 38 H 0.97009 * 119.99790 * 24.97185 * 16 14 12 39 39 H 1.08996 * 110.31180 * 334.53731 * 21 19 17 40 40 H 1.09000 * 110.30505 * 96.60211 * 21 19 17 41 41 H 1.08000 * 120.45270 * 359.97438 * 23 22 21 42 42 H 1.07992 * 119.64494 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.62576 * 180.02562 * 26 25 24 44 44 H 1.09004 * 110.30036 * 44.02356 * 28 27 26 45 45 H 1.09000 * 110.30028 * 281.88645 * 28 27 26 46 46 H 1.08999 * 109.58888 * 64.34636 * 29 12 11 47 47 H 1.09000 * 109.59012 * 184.77603 * 29 12 11 48 48 H 1.08993 * 109.58107 * 242.87924 * 30 9 7 49 49 H 1.08998 * 109.57981 * 3.28847 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0513 -1.2245 0.2871 9 7 1.3749 -2.3597 -0.3623 10 6 1.8053 -3.6488 0.1937 11 6 2.1675 -4.5897 -0.9618 12 6 1.0071 -4.6119 -1.9615 13 6 -0.0869 -5.6593 -1.7553 14 6 0.9078 -5.8069 -2.9088 15 1 0.5399 -5.6207 -3.9177 16 7 1.9298 -6.8500 -2.7912 17 6 2.2183 -7.6330 -3.8496 18 8 1.6322 -7.4739 -4.8994 19 6 3.2700 -8.7057 -3.7289 20 1 4.2443 -8.2710 -3.5055 21 6 3.3320 -9.5601 -5.0135 22 6 3.6365 -10.9622 -4.5409 23 6 4.1069 -12.0778 -5.2161 24 6 4.2968 -13.2554 -4.5180 25 7 4.0364 -13.3226 -3.2269 26 6 3.5883 -12.2814 -2.5538 27 6 3.3731 -11.0697 -3.1858 28 6 2.8732 -9.7444 -2.6573 29 6 0.5864 -3.2404 -2.4984 30 6 0.2557 -2.3263 -1.3123 31 1 -0.4851 0.8400 -0.0004 32 1 0.9945 -4.0835 0.7784 33 1 2.6776 -3.4993 0.8301 34 1 2.3363 -5.5948 -0.5754 35 1 3.0695 -4.2299 -1.4569 36 1 -1.1091 -5.3753 -2.0055 37 1 0.0191 -6.3380 -0.9091 38 1 2.3990 -6.9770 -1.9517 39 1 2.3731 -9.5354 -5.5311 40 1 4.1246 -9.2000 -5.6695 41 1 4.3212 -12.0276 -6.2734 42 1 4.6625 -14.1300 -5.0354 43 1 3.3869 -12.3753 -1.4968 44 1 3.3549 -9.5098 -1.7081 45 1 1.7902 -9.7696 -2.5365 46 1 1.4031 -2.8080 -3.0764 47 1 -0.2940 -3.3501 -3.1316 48 1 -0.6510 -2.6789 -0.8210 49 1 0.1082 -1.3063 -1.6673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016830398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:25 Heat of formation + Delta-G solvation = 40.983205 kcal Electronic energy + Delta-G solvation = -28974.430836 eV Core-core repulsion = 25095.128751 eV Total energy + Delta-G solvation = -3879.302085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.30992 -39.99504 -38.61102 -36.58191 -35.51732 -33.27960 -32.27365 -31.64120 -30.45304 -29.98453 -28.35721 -28.06287 -24.86040 -24.36819 -22.63565 -22.48338 -22.11148 -21.56093 -20.71009 -20.14090 -18.26635 -17.70058 -17.09319 -16.67902 -16.37125 -16.18974 -15.58399 -15.20494 -14.82765 -14.67120 -14.20368 -14.12339 -13.87291 -13.57010 -13.51743 -13.39736 -13.30762 -13.17514 -12.75243 -12.57824 -12.27912 -11.99818 -11.75569 -11.72375 -11.68321 -11.61186 -11.35950 -11.00006 -10.74053 -10.48397 -10.37562 -10.11298 -9.98340 -9.85809 -9.75301 -9.72035 -9.65572 -9.39486 -9.27447 -8.52967 -8.47061 -6.66929 -5.81220 -3.24588 0.73038 0.88168 2.40234 2.92615 3.36510 3.40726 3.42763 3.43928 3.77489 3.94755 4.12136 4.15952 4.43609 4.47571 4.49267 4.56504 4.67312 4.87953 4.93248 5.02789 5.06568 5.08647 5.09832 5.24655 5.31380 5.36823 5.44130 5.44926 5.51021 5.60265 5.64539 5.69959 5.81623 5.96145 6.01333 6.02868 6.04820 6.25071 6.31548 6.39340 6.50223 6.57763 6.60602 6.66130 6.79488 6.92652 7.33625 7.38915 7.60605 7.64462 7.76988 8.07157 8.44132 9.19358 9.82910 10.39368 11.26510 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026978 B = 0.001948 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.618269 B =14368.299068 C =14560.287540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.150 3.850 11 C -0.097 4.097 12 C -0.095 4.095 13 C -0.182 4.182 14 C 0.067 3.933 15 H 0.132 0.868 16 N -0.692 5.692 17 C 0.525 3.475 18 O -0.539 6.539 19 C -0.111 4.111 20 H 0.112 0.888 21 C -0.070 4.070 22 C -0.049 4.049 23 C -0.159 4.159 24 C 0.096 3.904 25 N -0.485 5.485 26 C 0.114 3.886 27 C -0.149 4.149 28 C -0.068 4.068 29 C -0.106 4.106 30 C 0.173 3.827 31 H 0.255 0.745 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.401 0.599 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.018 0.982 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -22.779 -7.577 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.220 4.220 14 C -0.039 4.039 15 H 0.150 0.850 16 N -0.341 5.341 17 C 0.311 3.689 18 O -0.416 6.416 19 C -0.132 4.132 20 H 0.130 0.870 21 C -0.107 4.107 22 C -0.057 4.057 23 C -0.179 4.179 24 C -0.060 4.060 25 N -0.194 5.194 26 C -0.043 4.043 27 C -0.151 4.151 28 C -0.106 4.106 29 C -0.146 4.146 30 C 0.047 3.953 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.237 0.763 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.172 0.828 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.037 0.963 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.075 -23.303 -7.876 25.337 hybrid contribution 0.485 1.524 -0.017 1.599 sum 6.560 -21.780 -7.892 24.076 Atomic orbital electron populations 1.70017 1.05279 1.25677 1.53518 1.25049 0.95251 0.98458 1.00805 0.86389 0.78966 0.83387 0.78140 1.21026 1.21635 1.20882 1.19134 0.92803 0.85043 1.41490 0.91857 1.43960 1.37852 1.01467 1.47834 1.20838 0.97394 0.87083 0.92403 1.21631 0.96214 0.98604 0.97204 1.21953 0.97954 0.91239 0.98499 1.23527 0.96187 1.02636 0.99675 1.21939 0.93226 0.91528 0.97190 0.85047 1.45397 1.40015 1.34249 1.14399 1.20181 0.83155 0.81835 0.83697 1.90699 1.52330 1.70248 1.28294 1.22040 0.99473 0.94567 0.97139 0.86957 1.20948 1.04463 0.88539 0.96738 1.20904 0.94546 0.95869 0.94378 1.21657 1.01726 0.92973 1.01570 1.22727 0.96068 0.97067 0.90177 1.67739 1.11784 1.30630 1.09198 1.22254 0.94749 0.87104 1.00150 1.21467 1.01351 0.96735 0.95591 1.20942 1.02073 0.89301 0.98271 1.21889 0.99698 0.93100 0.99885 1.20766 0.88786 0.98705 0.87040 0.93546 0.96316 0.92737 0.93654 0.91761 0.88329 0.89038 0.76311 0.87653 0.89468 0.84746 0.82489 0.82784 0.89232 0.89175 0.92112 0.93012 0.96347 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.23 55.49 0.62 -25.06 16 2 C 0.00 0.09 4.88 -17.43 -0.09 0.00 16 3 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.82 9.54 -15.06 -0.14 -6.97 16 8 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 9 N -0.59 -14.21 2.94 -172.25 -0.51 -14.72 16 10 C 0.15 2.95 6.51 -3.67 -0.02 2.92 16 11 C -0.10 -1.52 5.37 -26.46 -0.14 -1.66 16 12 C -0.09 -1.48 1.94 -154.49 -0.30 -1.78 16 13 C -0.18 -2.48 9.86 -26.79 -0.26 -2.74 16 14 C 0.07 0.91 6.14 -68.01 -0.42 0.49 16 15 H 0.13 1.98 7.40 -51.93 -0.38 1.60 16 16 N -0.69 -7.66 5.29 -53.88 -0.29 -7.95 16 17 C 0.53 6.04 7.06 -10.99 -0.08 5.96 16 18 O -0.54 -8.25 15.13 5.56 0.08 -8.17 16 19 C -0.11 -0.90 3.47 -90.28 -0.31 -1.21 16 20 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.07 -0.59 6.06 -26.97 -0.16 -0.75 16 22 C -0.05 -0.41 6.20 -104.22 -0.65 -1.06 16 23 C -0.16 -1.20 10.12 -39.45 -0.40 -1.60 16 24 C 0.10 0.76 11.19 -17.54 -0.20 0.56 16 25 N -0.49 -4.72 10.36 -13.22 -0.14 -4.86 16 26 C 0.11 0.98 11.19 -17.51 -0.20 0.78 16 27 C -0.15 -1.24 6.19 -104.26 -0.64 -1.88 16 28 C -0.07 -0.47 6.26 -26.90 -0.17 -0.64 16 29 C -0.11 -1.96 5.83 -26.45 -0.15 -2.12 16 30 C 0.17 3.98 5.40 -3.67 -0.02 3.96 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 34 H 0.04 0.56 6.75 -51.93 -0.35 0.21 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.40 3.59 7.11 -40.82 -0.29 3.30 16 39 H 0.11 1.06 7.07 -51.93 -0.37 0.69 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 2.35 5.93 -51.93 -0.31 2.05 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -32.07 390.88 -11.28 -43.35 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.56 Total: 2.92 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.36 Total: -7.73 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.30 Total: -52.58 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.07 -11.28 -43.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016830398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.331 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds