Wall clock time and date at job start Wed Apr 1 2020 00:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38754 * 119.85001 * 2 1 4 4 C 1.37763 * 120.63261 * 180.02562 * 3 2 1 5 5 C 1.39120 * 119.93210 * 0.02562 * 4 3 2 6 6 N 1.37968 * 133.18953 * 180.02562 * 5 4 3 7 7 H 0.96997 * 124.78379 * 0.02562 * 6 5 4 8 8 C 1.35470 * 110.42221 * 179.97438 * 6 5 4 9 9 C 1.36368 * 109.77208 * 359.97438 * 8 6 5 10 10 C 1.46909 * 126.76769 * 179.97438 * 9 8 6 11 11 O 1.21674 * 120.00307 * 180.02562 * 10 9 8 12 12 N 1.34784 * 120.00190 * 0.02562 * 10 9 8 13 13 C 1.46499 * 120.00150 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47031 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.49811 * 55.00421 * 14 13 12 16 16 C 1.53043 * 109.49987 * 175.06902 * 14 13 12 17 17 C 1.53033 * 109.53914 * 181.31642 * 16 14 13 18 18 C 1.53188 * 109.31406 * 298.63181 * 17 16 14 19 19 N 1.46923 * 108.77421 * 54.63633 * 18 17 16 20 20 C 1.36939 * 120.63115 * 126.38857 * 19 18 17 21 21 H 1.08004 * 120.00062 * 332.58928 * 20 19 18 22 22 C 1.38815 * 120.00007 * 152.57875 * 20 19 18 23 23 N 1.31620 * 119.99653 * 159.34289 * 22 20 19 24 24 Si 1.86792 * 119.99922 * 339.34517 * 22 20 19 25 25 H 1.48503 * 109.47210 * 92.94775 * 24 22 20 26 26 H 1.48508 * 109.47189 * 212.94650 * 24 22 20 27 27 H 1.48501 * 109.47360 * 332.94247 * 24 22 20 28 28 C 1.46930 * 118.76441 * 306.41277 * 19 18 17 29 29 C 1.40390 * 119.36077 * 359.97438 * 5 4 3 30 30 C 1.37750 * 119.84644 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47240 * 89.99841 * 1 2 3 32 32 H 1.08993 * 109.46889 * 210.00138 * 1 2 3 33 33 H 1.09005 * 109.46815 * 329.99849 * 1 2 3 34 34 H 1.07997 * 119.68414 * 359.74900 * 3 2 1 35 35 H 1.08000 * 120.03424 * 180.02562 * 4 3 2 36 36 H 1.08005 * 125.10775 * 180.02562 * 8 6 5 37 37 H 0.97001 * 119.99831 * 359.97438 * 12 10 9 38 38 H 1.08993 * 109.47183 * 299.99959 * 13 12 10 39 39 H 1.09005 * 109.46897 * 60.00051 * 13 12 10 40 40 H 1.09001 * 109.45793 * 301.33925 * 16 14 13 41 41 H 1.08996 * 109.45963 * 61.30429 * 16 14 13 42 42 H 1.09005 * 109.49798 * 58.58766 * 17 16 14 43 43 H 1.09000 * 109.49685 * 178.68019 * 17 16 14 44 44 H 1.09000 * 109.58458 * 174.42659 * 18 17 16 45 45 H 1.09003 * 109.58744 * 294.70340 * 18 17 16 46 46 H 0.97005 * 119.99509 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.56165 * 293.78477 * 28 19 18 48 48 H 1.09010 * 109.61229 * 173.36125 * 28 19 18 49 49 H 1.08003 * 120.16889 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.2035 0.0000 4 6 3.5752 1.2223 -0.0005 5 6 4.2858 0.0262 -0.0016 6 7 5.6329 -0.2718 -0.0019 7 1 6.3452 0.3865 -0.0010 8 6 5.8202 -1.6135 -0.0025 9 6 4.6130 -2.2478 -0.0021 10 6 4.3820 -3.6986 -0.0031 11 8 3.2457 -4.1338 -0.0031 12 7 5.4287 -4.5478 -0.0040 13 6 5.1983 -5.9945 -0.0045 14 6 6.5426 -6.7250 -0.0062 15 1 7.1445 -6.3813 0.8350 16 6 6.3054 -8.2319 0.1174 17 6 7.6505 -8.9609 0.1488 18 6 8.4013 -8.6955 -1.1599 19 7 8.5064 -7.2435 -1.3586 20 6 9.7235 -6.6557 -1.5787 21 1 10.6218 -7.1121 -1.1899 22 6 9.8026 -5.4734 -2.3019 23 7 10.8594 -4.6981 -2.1817 24 14 8.4093 -4.9830 -3.4453 25 1 7.4549 -4.1094 -2.7163 26 1 8.9615 -4.2479 -4.6116 27 1 7.7039 -6.2016 -3.9171 28 6 7.2812 -6.4336 -1.3163 29 6 3.5854 -1.1905 -0.0016 30 6 2.1926 -1.1948 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6501 2.1343 -0.0041 35 1 4.1029 2.1646 -0.0001 36 1 6.7811 -2.1065 -0.0025 37 1 6.3346 -4.2009 -0.0045 38 1 4.6343 -6.2728 0.8857 39 1 4.6332 -6.2721 -0.8943 40 1 5.7584 -8.4391 1.0372 41 1 5.7241 -8.5792 -0.7367 42 1 8.2425 -8.5962 0.9883 43 1 7.4814 -10.0319 0.2604 44 1 9.3995 -9.1298 -1.1030 45 1 7.8556 -9.1417 -1.9912 46 1 10.9145 -3.8717 -2.6868 47 1 6.6430 -6.6928 -2.1610 48 1 7.5402 -5.3757 -1.3623 49 1 1.6529 -2.1303 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023764950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:37 Heat of formation + Delta-G solvation = 29.918247 kcal Electronic energy + Delta-G solvation = -29574.150826 eV Core-core repulsion = 25694.368929 eV Total energy + Delta-G solvation = -3879.781897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53765 -39.24227 -37.95467 -37.49411 -34.71538 -33.12587 -32.32730 -31.53624 -31.12913 -30.58448 -29.01367 -26.56221 -25.76373 -25.32126 -23.07193 -22.78898 -22.23074 -21.21156 -20.83522 -19.72881 -19.15322 -18.29295 -16.90177 -16.53145 -16.22271 -15.59853 -15.52971 -15.12866 -15.00937 -14.55688 -14.37963 -14.15177 -13.87470 -13.84173 -13.52055 -13.41207 -13.28560 -13.23991 -12.84027 -12.76388 -12.38583 -12.27759 -12.08413 -11.71477 -11.62545 -11.46211 -11.36453 -11.06204 -10.81432 -10.61504 -10.53320 -10.15302 -9.97667 -9.80204 -9.72318 -9.68761 -9.49396 -8.82379 -8.67628 -8.30620 -7.84059 -7.02699 -6.02649 -3.37652 0.89123 1.40981 1.98700 2.84998 3.22206 3.42606 3.44231 3.47251 3.48188 3.87027 4.44566 4.51188 4.63439 4.80378 4.82466 4.87222 5.03285 5.16080 5.18956 5.24584 5.29538 5.34827 5.41580 5.47804 5.50750 5.52887 5.62069 5.66870 5.83584 5.85923 5.89614 5.99237 6.05096 6.10758 6.15688 6.21708 6.29786 6.33589 6.43135 6.54045 6.55096 6.55730 6.58752 6.61879 6.67489 6.75940 6.95597 6.97348 7.22521 7.76745 7.89811 8.25936 8.49265 8.87887 9.65002 10.04182 11.13128 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003082 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.121607 B = 9083.835364 C =10436.892796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.124 4.124 5 C 0.079 3.921 6 N -0.578 5.578 7 H 0.421 0.579 8 C 0.115 3.885 9 C -0.230 4.230 10 C 0.589 3.411 11 O -0.550 6.550 12 N -0.725 5.725 13 C 0.129 3.871 14 C -0.119 4.119 15 H 0.079 0.921 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.146 3.854 19 N -0.607 5.607 20 C -0.256 4.256 21 H 0.086 0.914 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.879 3.121 25 H -0.288 1.288 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.134 3.866 29 C -0.057 4.057 30 C -0.063 4.063 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.182 0.818 37 H 0.400 0.600 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.262 0.738 47 H 0.026 0.974 48 H 0.069 0.931 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 8.830 6.651 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C -0.120 4.120 4 C -0.144 4.144 5 C -0.026 4.026 6 N -0.179 5.179 7 H 0.258 0.742 8 C -0.018 4.018 9 C -0.240 4.240 10 C 0.378 3.622 11 O -0.429 6.429 12 N -0.377 5.377 13 C 0.005 3.995 14 C -0.140 4.140 15 H 0.098 0.902 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.020 3.980 19 N -0.330 5.330 20 C -0.384 4.384 21 H 0.104 0.896 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.710 3.290 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.008 3.992 29 C -0.061 4.061 30 C -0.082 4.082 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.199 0.801 37 H 0.235 0.765 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.062 8.703 6.579 18.598 hybrid contribution 0.340 0.897 -0.797 1.247 sum -14.723 9.599 5.782 18.502 Atomic orbital electron populations 1.20712 0.91087 1.02545 1.02129 1.19713 0.96062 0.92608 1.02959 1.20667 0.92799 0.97563 1.00962 1.19972 0.93813 0.94611 1.06017 1.18265 0.83063 0.95416 1.05846 1.41537 1.06333 1.06899 1.63122 0.74156 1.22269 0.99441 0.82729 0.97409 1.20070 0.92091 0.92630 1.19246 1.17179 0.84664 0.84558 0.75846 1.90732 1.22263 1.78698 1.51178 1.45923 1.09161 1.07024 1.75557 1.21418 0.97586 0.78663 1.01875 1.21968 0.94730 0.95691 1.01568 0.90213 1.21344 0.97572 0.94030 1.00974 1.21986 0.96420 0.98554 1.00381 1.20957 0.98489 0.84974 0.93566 1.44360 1.03430 1.01428 1.83761 1.18960 0.84924 1.06172 1.28354 0.89632 1.25272 0.96347 0.97304 0.98705 1.69849 1.30048 1.12466 1.42823 0.87036 0.81984 0.78226 0.81772 1.21598 1.23237 1.19633 1.21369 0.88120 0.96239 0.93449 1.18714 0.92990 0.90559 1.03860 1.20557 0.91757 0.98146 0.97732 0.91454 0.91560 0.91815 0.85724 0.86095 0.80104 0.76474 0.91619 0.91690 0.92709 0.92313 0.91954 0.92585 0.91964 0.95996 0.92855 0.95615 0.91265 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.00 36.01 0.36 -0.57 16 2 C -0.11 -1.28 5.88 -104.61 -0.62 -1.89 16 3 C -0.10 -1.01 9.66 -39.56 -0.38 -1.40 16 4 C -0.12 -1.28 10.07 -39.43 -0.40 -1.68 16 5 C 0.08 0.98 7.26 -83.97 -0.61 0.37 16 6 N -0.58 -6.08 5.99 -10.48 -0.06 -6.14 16 7 H 0.42 2.96 8.96 -40.82 -0.37 2.60 16 8 C 0.11 1.40 11.33 -16.62 -0.19 1.22 16 9 C -0.23 -3.50 6.27 -103.32 -0.65 -4.15 16 10 C 0.59 10.06 7.80 -12.75 -0.10 9.96 16 11 O -0.55 -10.79 16.16 5.21 0.08 -10.71 16 12 N -0.73 -11.49 5.32 -61.55 -0.33 -11.82 16 13 C 0.13 2.01 5.07 -4.04 -0.02 1.99 16 14 C -0.12 -1.96 2.37 -90.50 -0.21 -2.18 16 15 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 16 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 17 C -0.13 -2.08 6.08 -26.62 -0.16 -2.24 16 18 C 0.15 2.77 6.52 -3.71 -0.02 2.75 16 19 N -0.61 -13.81 2.77 -172.31 -0.48 -14.28 16 20 C -0.26 -6.86 10.03 -15.06 -0.15 -7.01 16 21 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 22 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 23 N -0.91 -26.58 13.97 55.49 0.78 -25.81 16 24 Si 0.88 21.70 24.34 -169.99 -4.14 17.56 16 25 H -0.29 -6.65 6.62 56.52 0.37 -6.27 16 26 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 27 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 28 C 0.13 2.76 3.29 -3.71 -0.01 2.75 16 29 C -0.06 -0.84 6.27 -104.95 -0.66 -1.50 16 30 C -0.06 -0.89 9.49 -39.37 -0.37 -1.27 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.18 1.84 7.38 -52.48 -0.39 1.45 16 37 H 0.40 5.97 6.58 -40.82 -0.27 5.70 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.03 0.55 7.07 -51.93 -0.37 0.19 16 48 H 0.07 1.52 3.71 -51.92 -0.19 1.33 16 49 H 0.13 1.97 7.45 -52.48 -0.39 1.58 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -33.56 387.71 -10.21 -43.78 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.49 Total: 7.52 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -4.42 Total: -5.95 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.09 Total: -58.05 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.56 -10.21 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023764950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.696 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds