Wall clock time and date at job start Wed Apr 1 2020 00:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39915 * 125.99581 * 2 1 4 4 C 1.38325 * 107.12303 * 180.02562 * 3 2 1 5 5 C 1.41355 * 131.72799 * 180.02562 * 4 3 2 6 6 C 1.35517 * 119.54831 * 179.73560 * 5 4 3 7 7 C 1.46460 * 118.96065 * 0.47743 * 6 5 4 8 8 C 1.47492 * 120.20049 * 179.77792 * 7 6 5 9 9 O 1.21597 * 120.00135 * 179.72341 * 8 7 6 10 10 N 1.34782 * 119.99805 * 359.72494 * 8 7 6 11 11 C 1.46498 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47235 * 179.97438 * 11 10 8 13 13 H 1.09006 * 109.70144 * 299.87151 * 12 11 10 14 14 C 1.52762 * 109.51266 * 179.75517 * 12 11 10 15 15 C 1.53043 * 109.38474 * 185.70618 * 14 12 11 16 16 C 1.53032 * 109.53937 * 61.23619 * 15 14 12 17 17 C 1.53196 * 109.31478 * 298.63800 * 16 15 14 18 18 N 1.46919 * 108.77410 * 54.63516 * 17 16 15 19 19 C 1.36941 * 120.63135 * 126.37234 * 18 17 16 20 20 H 1.08001 * 119.99567 * 211.06171 * 19 18 17 21 21 C 1.38806 * 119.99791 * 31.05914 * 19 18 17 22 22 N 1.31623 * 120.00358 * 14.03805 * 21 19 18 23 23 Si 1.86799 * 119.99827 * 194.03433 * 21 19 18 24 24 H 1.48495 * 109.47198 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47393 * 299.99996 * 23 21 19 26 26 H 1.48503 * 109.47103 * 60.00148 * 23 21 19 27 27 C 1.36302 * 119.59877 * 359.50071 * 7 6 5 28 28 N 1.36526 * 120.65812 * 0.25310 * 27 7 6 29 29 C 1.35269 * 125.99869 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47356 * 90.02576 * 1 2 3 31 31 H 1.08997 * 109.46641 * 210.02780 * 1 2 3 32 32 H 1.09006 * 109.46889 * 330.02306 * 1 2 3 33 33 H 1.08001 * 126.44345 * 359.95859 * 3 2 1 34 34 H 1.07998 * 120.22894 * 359.97438 * 5 4 3 35 35 H 1.08005 * 120.52499 * 180.23277 * 6 5 4 36 36 H 0.97001 * 120.00331 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47588 * 59.99533 * 11 10 8 38 38 H 1.08997 * 109.46833 * 299.99815 * 11 10 8 39 39 H 1.08999 * 109.56297 * 65.67045 * 14 12 11 40 40 H 1.08998 * 109.38556 * 305.63215 * 14 12 11 41 41 H 1.08999 * 109.45639 * 301.21706 * 15 14 12 42 42 H 1.08994 * 109.44584 * 181.25540 * 15 14 12 43 43 H 1.09005 * 109.49982 * 178.68314 * 16 15 14 44 44 H 1.09007 * 109.49617 * 58.58824 * 16 15 14 45 45 H 1.08995 * 109.58340 * 294.84500 * 17 16 15 46 46 H 1.09000 * 109.70127 * 174.49329 * 17 16 15 47 47 H 0.96991 * 120.00056 * 179.97438 * 22 21 19 48 48 H 1.08004 * 119.67453 * 180.23482 * 27 7 6 49 49 H 1.08001 * 125.53094 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6383 0.6846 -0.0006 5 6 4.8698 1.3785 -0.0004 6 6 6.0307 0.6794 0.0043 7 6 5.9773 -0.7842 -0.0016 8 6 7.2241 -1.5721 -0.0016 9 8 7.1756 -2.7871 -0.0014 10 7 8.4174 -0.9454 -0.0018 11 6 9.6558 -1.7280 -0.0024 12 6 10.8575 -0.7810 -0.0031 13 1 10.8293 -0.1522 -0.8931 14 6 12.1494 -1.5962 0.0024 15 6 13.3453 -0.6518 0.1452 16 6 13.2441 0.1052 1.4713 17 6 11.9621 0.9439 1.4794 18 7 10.8197 0.0639 1.1983 19 6 9.7424 0.0277 2.0430 20 1 9.1769 -0.8852 2.1580 21 6 9.3775 1.1642 2.7514 22 7 9.8755 2.3360 2.4177 23 14 8.1794 1.0307 4.1784 24 1 7.9548 2.3768 4.7637 25 1 6.8885 0.4816 3.6913 26 1 8.7421 0.1276 5.2143 27 6 4.7684 -1.4137 -0.0013 28 7 3.6085 -0.6936 -0.0008 29 6 2.3021 -1.0944 -0.0005 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3632 -0.8897 0.5143 32 1 -0.3633 0.8903 0.5135 33 1 2.0035 2.1617 -0.0006 34 1 4.8854 2.4583 -0.0001 35 1 6.9806 1.1935 0.0083 36 1 8.4562 0.0239 -0.0023 37 1 9.6882 -2.3563 -0.8925 38 1 9.6887 -2.3566 0.8874 39 1 12.2343 -2.1520 -0.9314 40 1 12.1340 -2.2929 0.8405 41 1 13.3463 0.0600 -0.6802 42 1 14.2688 -1.2305 0.1269 43 1 14.1081 0.7604 1.5831 44 1 13.2180 -0.6072 2.2959 45 1 12.0258 1.7161 0.7129 46 1 11.8334 1.4089 2.4568 47 1 9.6201 3.1302 2.9125 48 1 4.7276 -2.4930 -0.0018 49 1 1.9600 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024475367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:49 Heat of formation + Delta-G solvation = 53.484072 kcal Electronic energy + Delta-G solvation = -30147.359999 eV Core-core repulsion = 26268.599992 eV Total energy + Delta-G solvation = -3878.760007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.04654 -39.39824 -37.82439 -36.12169 -34.33132 -33.16535 -33.09071 -31.55387 -30.67419 -29.96320 -27.92420 -27.27182 -25.93803 -24.80346 -22.96492 -22.33119 -22.15345 -20.94383 -20.40046 -19.53549 -19.09086 -17.72237 -16.98901 -16.25106 -15.97580 -15.68522 -15.43971 -15.34719 -14.36477 -14.34590 -14.20542 -14.06216 -13.78301 -13.54556 -13.38691 -13.17037 -13.06654 -12.90106 -12.85914 -12.47482 -12.15887 -12.05007 -11.83328 -11.60232 -11.36755 -11.23149 -10.99872 -10.81728 -10.73867 -10.59450 -10.33583 -10.29136 -10.18394 -10.03663 -9.71057 -9.52584 -9.37039 -8.65238 -8.41097 -8.18998 -7.30258 -6.71478 -5.89708 -3.36042 0.85421 1.30928 2.68819 2.74481 3.21789 3.32151 3.37482 3.41913 3.76916 3.92778 4.39233 4.58840 4.81530 4.89500 5.03465 5.12531 5.18367 5.25400 5.27253 5.27858 5.45608 5.56249 5.58056 5.59768 5.65093 5.69085 5.85815 5.88149 5.92905 5.99808 6.08049 6.10935 6.19566 6.26640 6.32675 6.37025 6.42629 6.49819 6.55696 6.66797 6.69633 6.81570 6.91862 6.92522 6.99868 7.07440 7.32663 7.33817 7.60646 7.73839 8.13927 8.35119 8.71570 9.11112 9.72427 10.30465 11.16831 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.003325 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.393996 B = 8418.613986 C = 9495.948119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.119 4.119 3 C -0.208 4.208 4 C 0.055 3.945 5 C -0.101 4.101 6 C -0.088 4.088 7 C -0.154 4.154 8 C 0.563 3.437 9 O -0.565 6.565 10 N -0.681 5.681 11 C 0.134 3.866 12 C 0.160 3.840 13 H 0.032 0.968 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.588 5.588 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.013 3.987 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.290 1.290 25 H -0.280 1.280 26 H -0.284 1.284 27 C 0.116 3.884 28 N -0.352 5.352 29 C -0.058 4.058 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.416 0.584 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.084 0.916 47 H 0.255 0.745 48 H 0.172 0.828 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 -2.792 -6.803 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C -0.232 4.232 4 C -0.050 4.050 5 C -0.119 4.119 6 C -0.108 4.108 7 C -0.159 4.159 8 C 0.349 3.651 9 O -0.447 6.447 10 N -0.331 5.331 11 C 0.010 3.990 12 C 0.053 3.947 13 H 0.050 0.950 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.312 5.312 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.186 4.186 22 N -0.541 5.541 23 Si 0.718 3.282 24 H -0.215 1.215 25 H -0.206 1.206 26 H -0.210 1.210 27 C -0.006 4.006 28 N -0.017 5.017 29 C -0.184 4.184 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.190 0.810 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.333 -3.656 -6.726 11.315 hybrid contribution -0.415 0.472 1.010 1.190 sum -8.748 -3.184 -5.716 10.924 Atomic orbital electron populations 1.20186 0.89626 1.02264 1.01749 1.19439 0.95676 0.92208 1.04964 1.20923 0.89571 0.98677 1.14039 1.18988 0.95642 0.81814 1.08515 1.20492 0.89126 1.00321 1.01979 1.22223 0.99360 0.91518 0.97714 1.20413 0.92896 0.94065 1.08573 1.17602 0.83360 0.86802 0.77334 1.90729 1.87683 1.13467 1.52854 1.45887 1.04377 1.11838 1.71027 1.21347 0.82858 0.93818 1.00940 1.20650 0.91379 0.91495 0.91170 0.95016 1.21868 0.96111 0.98167 1.00584 1.21358 0.96686 0.98021 0.98426 1.22195 1.00049 0.99615 0.96506 1.20762 0.82939 0.90163 1.01360 1.44056 1.17445 1.47280 1.22437 1.19156 1.06138 0.94703 1.18442 0.91337 1.25012 0.98508 0.95022 1.00109 1.69989 1.46260 0.97484 1.40363 0.86587 0.81498 0.76801 0.83354 1.21530 1.20626 1.21029 1.21648 0.83134 0.98046 0.97800 1.41419 1.05363 1.07095 1.47815 1.21625 0.79831 0.99842 1.17135 0.91683 0.91973 0.91649 0.83888 0.83659 0.83479 0.74462 0.92396 0.91346 0.92966 0.92071 0.92857 0.93697 0.93528 0.92840 0.96333 0.89730 0.93487 0.81045 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.37 36.01 0.37 -0.34 16 2 C -0.12 -1.46 6.10 -105.05 -0.64 -2.10 16 3 C -0.21 -2.81 10.91 -38.92 -0.42 -3.23 16 4 C 0.06 0.85 6.71 -83.94 -0.56 0.28 16 5 C -0.10 -1.51 10.09 -39.37 -0.40 -1.90 16 6 C -0.09 -1.43 9.73 -37.24 -0.36 -1.79 16 7 C -0.15 -2.64 5.98 -103.51 -0.62 -3.26 16 8 C 0.56 10.69 7.77 -12.49 -0.10 10.59 16 9 O -0.57 -11.82 16.28 5.28 0.09 -11.73 16 10 N -0.68 -12.79 3.80 -61.37 -0.23 -13.02 16 11 C 0.13 2.46 4.42 -4.04 -0.02 2.44 16 12 C 0.16 2.98 2.99 -67.82 -0.20 2.78 16 13 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 14 C -0.13 -2.07 5.35 -26.83 -0.14 -2.21 16 15 C -0.11 -1.70 5.89 -26.69 -0.16 -1.86 16 16 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 17 C 0.17 3.79 5.27 -3.71 -0.02 3.77 16 18 N -0.59 -12.97 2.98 -165.03 -0.49 -13.46 16 19 C -0.25 -6.17 6.98 -15.06 -0.11 -6.28 16 20 H 0.07 1.72 5.84 -52.49 -0.31 1.42 16 21 C 0.01 0.33 4.97 -17.43 -0.09 0.25 16 22 N -0.90 -23.48 11.23 55.49 0.62 -22.85 16 23 Si 0.89 20.96 29.58 -169.99 -5.03 15.93 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.12 1.83 10.45 -16.16 -0.17 1.66 16 28 N -0.35 -5.32 2.93 -60.50 -0.18 -5.49 16 29 C -0.06 -0.75 11.49 -16.46 -0.19 -0.93 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.15 2.41 6.58 -52.48 -0.35 2.06 16 36 H 0.42 8.04 5.49 -40.82 -0.22 7.81 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.37 7.42 -51.93 -0.39 0.99 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 2.10 6.19 -51.93 -0.32 1.78 16 47 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 48 H 0.17 2.44 7.56 -52.48 -0.40 2.04 16 49 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -28.51 388.92 -10.80 -39.31 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.46 Total: 10.38 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.98 Total: -4.92 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.28 Total: -54.83 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.51 -10.80 -39.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024475367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.795 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds