Wall clock time and date at job start Wed Apr 1 2020 00:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48508 * 109.46944 * 270.00167 * 3 2 1 5 5 H 1.48505 * 109.47277 * 29.99708 * 3 2 1 6 6 H 1.48501 * 109.47446 * 150.00028 * 3 2 1 7 7 C 1.38810 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00266 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00392 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.47724 * 34.29307 * 10 9 7 12 12 C 1.55060 * 110.65449 * 271.54830 * 10 9 7 13 13 C 1.55052 * 102.10934 * 201.26696 * 12 10 9 14 14 C 1.54317 * 103.93605 * 40.05584 * 13 12 10 15 15 H 1.08998 * 112.36268 * 97.61180 * 14 13 12 16 16 C 1.53788 * 109.06567 * 222.03219 * 14 13 12 17 17 N 1.47209 * 106.37786 * 132.42815 * 16 14 13 18 18 C 1.34778 * 126.70004 * 148.72291 * 17 16 14 19 19 O 1.21512 * 120.00374 * 176.72211 * 18 17 16 20 20 C 1.48151 * 119.99805 * 356.71839 * 18 17 16 21 21 C 1.39834 * 120.92403 * 26.64658 * 20 18 17 22 22 C 1.38133 * 119.00554 * 179.75345 * 21 20 18 23 23 N 1.31832 * 120.89515 * 0.53794 * 22 21 20 24 24 C 1.31801 * 122.04685 * 359.73247 * 23 22 21 25 25 C 1.50695 * 119.55324 * 180.02562 * 24 23 22 26 26 C 1.53003 * 117.50149 * 163.72600 * 25 24 23 27 27 C 1.53000 * 117.49788 * 95.06645 * 25 24 23 28 28 C 1.38174 * 120.89651 * 359.97438 * 24 23 22 29 29 C 1.47204 * 106.60000 * 328.71860 * 17 16 14 30 30 C 1.53778 * 106.38086 * 31.28171 * 29 17 16 31 31 H 1.09004 * 112.38497 * 103.15094 * 30 29 17 32 32 H 0.96998 * 120.00060 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99794 * 359.97438 * 9 7 2 34 34 H 1.08999 * 110.90107 * 319.46837 * 12 10 9 35 35 H 1.08998 * 110.90259 * 83.06137 * 12 10 9 36 36 H 1.09000 * 110.53208 * 281.44196 * 13 12 10 37 37 H 1.08996 * 110.53640 * 158.67233 * 13 12 10 38 38 H 1.08997 * 110.07311 * 251.65621 * 16 14 13 39 39 H 1.09000 * 110.07013 * 13.14552 * 16 14 13 40 40 H 1.08002 * 120.50035 * 0.02562 * 21 20 18 41 41 H 1.07995 * 119.55294 * 180.27359 * 22 21 20 42 42 H 1.09005 * 115.55137 * 309.39756 * 25 24 23 43 43 H 1.08999 * 117.49681 * 0.02562 * 26 25 24 44 44 H 1.08999 * 117.50063 * 145.02280 * 26 25 24 45 45 H 1.09004 * 117.50147 * 214.97958 * 27 25 24 46 46 H 1.08998 * 117.49796 * 359.97438 * 27 25 24 47 47 H 1.07996 * 120.49831 * 180.02562 * 28 24 23 48 48 H 1.09001 * 110.07703 * 272.05415 * 29 17 16 49 49 H 1.08997 * 110.07888 * 150.51393 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9788 -3.5650 0.5777 12 6 2.3665 -4.1115 -1.4483 13 6 2.6040 -5.6332 -1.2684 14 6 1.5272 -6.0594 -0.2485 15 1 0.6473 -6.4874 -0.7289 16 6 2.1522 -7.0331 0.7646 17 7 1.7444 -6.5626 2.0985 18 6 1.5290 -7.3234 3.1900 19 8 1.2519 -6.7996 4.2508 20 6 1.6302 -8.7985 3.0963 21 6 2.4423 -9.4033 2.1320 22 6 2.5112 -10.7821 2.0835 23 7 1.8168 -11.5244 2.9229 24 6 1.0354 -10.9952 3.8429 25 6 0.2670 -11.8972 4.7740 26 6 -0.3133 -11.2720 6.0442 27 6 0.8947 -12.2078 6.1343 28 6 0.9119 -9.6245 3.9660 29 6 1.6178 -5.0988 2.0076 30 6 1.1766 -4.7903 0.5671 31 1 0.1160 -4.5472 0.5008 32 1 -0.4850 0.8400 0.0004 33 1 0.3555 -2.3881 0.0005 34 1 1.5155 -3.9256 -2.1035 35 1 3.2624 -3.6202 -1.8276 36 1 3.6018 -5.8200 -0.8715 37 1 2.4635 -6.1565 -2.2141 38 1 1.7780 -8.0424 0.5933 39 1 3.2386 -7.0173 0.6774 40 1 3.0108 -8.8014 1.4384 41 1 3.1391 -11.2584 1.3451 42 1 -0.3095 -12.6876 4.2935 43 1 -0.1397 -10.2082 6.2061 44 1 -1.2714 -11.6514 6.3995 45 1 0.7308 -13.2025 6.5490 46 1 1.8636 -11.7601 6.3556 47 1 0.2701 -9.1977 4.7224 48 1 2.5783 -4.6266 2.2138 49 1 0.8666 -4.7436 2.7131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026302829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:34 Heat of formation + Delta-G solvation = 51.130132 kcal Electronic energy + Delta-G solvation = -29225.735223 eV Core-core repulsion = 25346.873142 eV Total energy + Delta-G solvation = -3878.862081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20030 -40.09121 -38.47167 -37.30109 -35.38813 -33.51363 -32.99402 -31.36235 -31.03392 -29.52399 -28.60399 -25.60141 -25.36444 -24.52428 -23.41169 -22.91462 -22.49530 -21.52064 -20.42972 -19.51191 -19.27211 -17.67333 -17.14719 -16.98337 -16.55938 -16.05407 -15.68975 -15.39524 -15.26506 -14.99426 -14.57970 -14.36556 -14.28117 -13.89599 -13.76923 -13.23982 -13.11138 -12.75720 -12.60389 -12.52680 -12.10032 -11.98739 -11.75804 -11.65899 -11.24096 -11.12428 -10.96916 -10.84835 -10.82006 -10.72721 -10.46664 -10.40252 -10.29960 -10.26294 -10.13516 -9.98068 -9.70754 -9.65647 -9.24933 -8.91580 -8.78226 -6.99321 -5.80497 -3.09583 0.46652 0.70410 2.59052 2.77962 3.25144 3.41206 3.46743 3.48336 3.51787 3.80151 4.08339 4.34561 4.42500 4.49118 4.54067 4.55819 4.62642 4.71532 4.75208 4.76724 4.80594 5.11476 5.17406 5.25605 5.27892 5.34221 5.37039 5.45020 5.47529 5.51468 5.54253 5.66813 5.69382 5.74171 5.74808 5.80366 5.87502 5.89925 5.97975 6.11116 6.17202 6.21634 6.26747 6.33767 6.47511 6.57594 6.73363 6.97629 7.38071 7.58499 7.66820 7.94117 8.37827 9.49164 10.05873 10.39784 11.41947 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.002237 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.111775 B =12513.032824 C =13396.444693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.057 0.943 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.100 4.100 15 H 0.087 0.913 16 C 0.092 3.908 17 N -0.606 5.606 18 C 0.571 3.429 19 O -0.530 6.530 20 C -0.073 4.073 21 C -0.160 4.160 22 C 0.101 3.899 23 N -0.467 5.467 24 C 0.156 3.844 25 C -0.110 4.110 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.116 4.116 29 C 0.116 3.884 30 C -0.106 4.106 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.164 0.836 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.147 0.853 48 H 0.076 0.924 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -25.780 4.068 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.075 0.925 12 C -0.184 4.184 13 C -0.154 4.154 14 C -0.120 4.120 15 H 0.106 0.894 16 C -0.031 4.031 17 N -0.338 5.338 18 C 0.359 3.641 19 O -0.407 6.407 20 C -0.084 4.084 21 C -0.180 4.180 22 C -0.056 4.056 23 N -0.176 5.176 24 C 0.018 3.982 25 C -0.128 4.128 26 C -0.211 4.211 27 C -0.198 4.198 28 C -0.137 4.137 29 C -0.006 4.006 30 C -0.127 4.127 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.164 0.836 48 H 0.094 0.906 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.375 -26.253 4.697 26.882 hybrid contribution 0.121 1.900 -0.189 1.913 sum 3.496 -24.353 4.508 25.012 Atomic orbital electron populations 1.69652 1.05113 1.25732 1.57465 1.24745 0.95506 0.97730 1.02862 0.86209 0.78693 0.83900 0.77488 1.21735 1.21777 1.20750 1.19219 0.90973 0.84065 1.42928 0.91173 1.42435 1.05714 0.99696 1.88172 1.21237 0.93517 0.85097 0.92834 0.92509 1.23302 1.01505 0.92781 1.00790 1.22489 0.97220 0.97931 0.97793 1.22605 0.98864 0.94977 0.95562 0.89445 1.22787 0.99510 0.98954 0.81848 1.48521 1.66593 1.08858 1.09875 1.17807 0.77645 0.85602 0.83069 1.90808 1.48391 1.73923 1.27533 1.20318 0.98020 0.93680 0.96371 1.22866 0.99656 0.96990 0.98457 1.22760 0.96238 0.90205 0.96385 1.67257 1.05531 1.41329 1.03506 1.20297 0.93829 0.90501 0.93539 1.20765 1.02610 1.01267 0.88204 1.23165 0.98400 0.99935 0.99615 1.22990 0.97930 1.01119 0.97759 1.22068 0.99213 0.93463 0.98906 1.22255 1.02370 0.77991 0.97946 1.22923 1.01714 0.95373 0.92643 0.89070 0.93467 0.78163 0.91483 0.92053 0.91633 0.92040 0.90026 0.90532 0.83006 0.81885 0.85819 0.87967 0.87756 0.87988 0.88623 0.83571 0.90576 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.12 5.23 -51.71 -0.27 -17.39 16 10 C 0.18 3.33 3.02 -66.15 -0.20 3.13 16 11 H 0.06 1.06 7.15 -51.93 -0.37 0.69 16 12 C -0.14 -2.26 6.60 -24.56 -0.16 -2.42 16 13 C -0.12 -1.32 6.35 -24.96 -0.16 -1.48 16 14 C -0.10 -1.16 3.91 -88.53 -0.35 -1.51 16 15 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.09 0.92 4.73 -3.24 -0.02 0.91 16 17 N -0.61 -8.08 3.32 -172.59 -0.57 -8.66 16 18 C 0.57 8.31 7.71 -12.19 -0.09 8.21 16 19 O -0.53 -9.59 16.99 5.36 0.09 -9.50 16 20 C -0.07 -0.86 5.74 -104.65 -0.60 -1.46 16 21 C -0.16 -1.46 8.02 -39.02 -0.31 -1.77 16 22 C 0.10 0.88 11.17 -17.59 -0.20 0.68 16 23 N -0.47 -4.94 10.25 -9.52 -0.10 -5.03 16 24 C 0.16 1.62 6.46 -82.63 -0.53 1.08 16 25 C -0.11 -0.90 6.21 -91.77 -0.57 -1.47 16 26 C -0.17 -1.21 9.80 -26.69 -0.26 -1.47 16 27 C -0.16 -1.13 10.24 -26.69 -0.27 -1.40 16 28 C -0.12 -1.31 8.94 -39.02 -0.35 -1.65 16 29 C 0.12 1.78 6.53 -3.25 -0.02 1.75 16 30 C -0.11 -1.61 3.60 -88.53 -0.32 -1.93 16 31 H 0.09 1.50 7.80 -51.93 -0.40 1.10 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.38 9.80 7.59 -40.82 -0.31 9.49 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.67 7.19 -51.93 -0.37 0.30 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.68 5.62 -51.93 -0.29 0.39 16 39 H 0.08 0.66 6.72 -51.93 -0.35 0.31 16 40 H 0.15 1.09 4.88 -52.49 -0.26 0.83 16 41 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.77 6.38 -51.93 -0.33 0.44 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.15 1.61 6.14 -52.49 -0.32 1.29 16 48 H 0.08 1.20 7.13 -51.93 -0.37 0.83 16 49 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -32.40 388.08 -11.10 -43.51 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.14 Total: 8.92 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -4.66 Total: -7.84 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.22 Total: -58.01 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.40 -11.10 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026302829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.637 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds