Wall clock time and date at job start Wed Apr 1 2020 00:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48508 * 109.46944 * 270.00167 * 3 2 1 5 5 H 1.48505 * 109.47277 * 29.99708 * 3 2 1 6 6 H 1.48501 * 109.47446 * 150.00028 * 3 2 1 7 7 C 1.38810 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00266 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00392 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.47724 * 34.29307 * 10 9 7 12 12 C 1.55060 * 110.65449 * 271.54830 * 10 9 7 13 13 C 1.55052 * 102.10934 * 201.26696 * 12 10 9 14 14 C 1.54317 * 103.93605 * 40.05584 * 13 12 10 15 15 H 1.08998 * 112.36268 * 97.61180 * 14 13 12 16 16 C 1.53788 * 109.06567 * 222.03219 * 14 13 12 17 17 N 1.47209 * 106.37786 * 132.42815 * 16 14 13 18 18 C 1.34778 * 126.70004 * 148.72291 * 17 16 14 19 19 O 1.21512 * 120.00374 * 176.72211 * 18 17 16 20 20 C 1.48151 * 119.99805 * 356.71839 * 18 17 16 21 21 C 1.39834 * 120.92403 * 26.64658 * 20 18 17 22 22 C 1.38133 * 119.00554 * 179.75345 * 21 20 18 23 23 N 1.31832 * 120.89515 * 0.53794 * 22 21 20 24 24 C 1.31801 * 122.04685 * 359.73247 * 23 22 21 25 25 C 1.50695 * 119.55324 * 180.02562 * 24 23 22 26 26 C 1.53003 * 117.50149 * 163.72600 * 25 24 23 27 27 C 1.53000 * 117.49788 * 95.06645 * 25 24 23 28 28 C 1.38174 * 120.89651 * 359.97438 * 24 23 22 29 29 C 1.47204 * 106.60000 * 328.71860 * 17 16 14 30 30 C 1.53778 * 106.38086 * 31.28171 * 29 17 16 31 31 H 1.09004 * 112.38497 * 103.15094 * 30 29 17 32 32 H 0.96998 * 120.00060 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99794 * 359.97438 * 9 7 2 34 34 H 1.08999 * 110.90107 * 319.46837 * 12 10 9 35 35 H 1.08998 * 110.90259 * 83.06137 * 12 10 9 36 36 H 1.09000 * 110.53208 * 281.44196 * 13 12 10 37 37 H 1.08996 * 110.53640 * 158.67233 * 13 12 10 38 38 H 1.08997 * 110.07311 * 251.65621 * 16 14 13 39 39 H 1.09000 * 110.07013 * 13.14552 * 16 14 13 40 40 H 1.08002 * 120.50035 * 0.02562 * 21 20 18 41 41 H 1.07995 * 119.55294 * 180.27359 * 22 21 20 42 42 H 1.09005 * 115.55137 * 309.39756 * 25 24 23 43 43 H 1.08999 * 117.49681 * 0.02562 * 26 25 24 44 44 H 1.08999 * 117.50063 * 145.02280 * 26 25 24 45 45 H 1.09004 * 117.50147 * 214.97958 * 27 25 24 46 46 H 1.08998 * 117.49796 * 359.97438 * 27 25 24 47 47 H 1.07996 * 120.49831 * 180.02562 * 28 24 23 48 48 H 1.09001 * 110.07703 * 272.05415 * 29 17 16 49 49 H 1.08997 * 110.07888 * 150.51393 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9788 -3.5650 0.5777 12 6 2.3665 -4.1115 -1.4483 13 6 2.6040 -5.6332 -1.2684 14 6 1.5272 -6.0594 -0.2485 15 1 0.6473 -6.4874 -0.7289 16 6 2.1522 -7.0331 0.7646 17 7 1.7444 -6.5626 2.0985 18 6 1.5290 -7.3234 3.1900 19 8 1.2519 -6.7996 4.2508 20 6 1.6302 -8.7985 3.0963 21 6 2.4423 -9.4033 2.1320 22 6 2.5112 -10.7821 2.0835 23 7 1.8168 -11.5244 2.9229 24 6 1.0354 -10.9952 3.8429 25 6 0.2670 -11.8972 4.7740 26 6 -0.3133 -11.2720 6.0442 27 6 0.8947 -12.2078 6.1343 28 6 0.9119 -9.6245 3.9660 29 6 1.6178 -5.0988 2.0076 30 6 1.1766 -4.7903 0.5671 31 1 0.1160 -4.5472 0.5008 32 1 -0.4850 0.8400 0.0004 33 1 0.3555 -2.3881 0.0005 34 1 1.5155 -3.9256 -2.1035 35 1 3.2624 -3.6202 -1.8276 36 1 3.6018 -5.8200 -0.8715 37 1 2.4635 -6.1565 -2.2141 38 1 1.7780 -8.0424 0.5933 39 1 3.2386 -7.0173 0.6774 40 1 3.0108 -8.8014 1.4384 41 1 3.1391 -11.2584 1.3451 42 1 -0.3095 -12.6876 4.2935 43 1 -0.1397 -10.2082 6.2061 44 1 -1.2714 -11.6514 6.3995 45 1 0.7308 -13.2025 6.5490 46 1 1.8636 -11.7601 6.3556 47 1 0.2701 -9.1977 4.7224 48 1 2.5783 -4.6266 2.2138 49 1 0.8666 -4.7436 2.7131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026302829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:33 Heat of formation + Delta-G solvation = 31.599566 kcal Electronic energy + Delta-G solvation = -29226.582132 eV Core-core repulsion = 25346.873142 eV Total energy + Delta-G solvation = -3879.708990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12222 -41.05827 -39.64117 -37.92696 -36.80849 -35.13780 -33.88462 -32.76501 -32.05589 -30.76755 -29.91157 -26.93950 -26.37616 -25.44060 -24.71155 -24.16010 -23.13627 -22.26914 -21.63359 -20.57165 -20.47169 -19.14501 -18.50536 -17.86399 -17.54906 -17.04817 -16.79061 -16.53735 -16.19232 -15.96482 -15.71148 -15.61272 -15.29964 -15.04268 -14.88168 -14.64165 -14.49960 -13.90359 -13.76648 -13.44729 -13.19868 -13.17989 -12.91998 -12.72043 -12.60398 -12.36524 -12.30064 -12.12066 -12.03030 -11.75481 -11.67963 -11.57979 -11.49529 -11.41994 -11.39118 -11.35199 -10.98328 -10.87829 -10.48954 -9.97974 -9.86301 -8.96966 -7.94245 -5.21740 -0.37880 -0.01924 1.46360 1.47606 1.54121 1.55745 1.73675 2.55869 2.56898 2.84612 3.11587 3.18318 3.38336 3.40079 3.61360 3.69976 3.72369 3.81485 3.90287 3.97451 4.04638 4.11101 4.14549 4.16583 4.32206 4.38978 4.43612 4.46580 4.59540 4.61430 4.64701 4.67819 4.73896 4.79684 4.81721 4.87530 4.89651 5.00066 5.03382 5.06072 5.12644 5.16672 5.20326 5.27504 5.39873 5.47455 5.51910 5.53918 5.63507 6.28426 6.31996 6.82852 6.86494 7.34127 8.11948 8.32883 9.29359 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.002237 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.111775 B =12513.032824 C =13396.444693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.175 3.825 11 H 0.053 0.947 12 C -0.139 4.139 13 C -0.100 4.100 14 C -0.091 4.091 15 H 0.101 0.899 16 C 0.090 3.910 17 N -0.603 5.603 18 C 0.567 3.433 19 O -0.580 6.580 20 C -0.089 4.089 21 C -0.149 4.149 22 C 0.108 3.892 23 N -0.481 5.481 24 C 0.151 3.849 25 C -0.121 4.121 26 C -0.172 4.172 27 C -0.155 4.155 28 C -0.131 4.131 29 C 0.120 3.880 30 C -0.101 4.101 31 H 0.071 0.929 32 H 0.249 0.751 33 H 0.371 0.629 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.179 0.821 41 H 0.203 0.797 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.136 0.864 48 H 0.071 0.929 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -28.943 2.535 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.195 1.195 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.374 5.374 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.180 4.180 13 C -0.138 4.138 14 C -0.110 4.110 15 H 0.120 0.880 16 C -0.031 4.031 17 N -0.334 5.334 18 C 0.357 3.643 19 O -0.460 6.460 20 C -0.100 4.100 21 C -0.168 4.168 22 C -0.050 4.050 23 N -0.191 5.191 24 C 0.015 3.985 25 C -0.140 4.140 26 C -0.210 4.210 27 C -0.192 4.192 28 C -0.152 4.152 29 C -0.003 4.003 30 C -0.121 4.121 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.203 0.797 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.196 0.804 41 H 0.220 0.780 42 H 0.151 0.849 43 H 0.108 0.892 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.104 0.896 47 H 0.154 0.846 48 H 0.089 0.911 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.562 -29.477 3.132 30.160 hybrid contribution -0.508 2.820 0.295 2.881 sum 5.054 -26.657 3.427 27.347 Atomic orbital electron populations 1.69811 1.06589 1.25858 1.59919 1.25527 0.96324 1.01028 1.04209 0.85203 0.77720 0.79856 0.77389 1.21379 1.22637 1.19475 1.19607 0.91392 0.85228 1.40333 0.90565 1.42656 1.05317 1.01075 1.88389 1.21522 0.93272 0.83784 0.94837 0.92955 1.23125 1.00450 0.96481 0.97923 1.22446 0.98105 0.94057 0.99149 1.22611 0.99797 0.93098 0.95521 0.88027 1.23086 1.01191 0.99654 0.79131 1.48539 1.66036 1.07741 1.11069 1.18315 0.76648 0.86868 0.82509 1.90775 1.50705 1.75054 1.29490 1.20183 0.99906 0.91678 0.98190 1.23103 0.98585 0.97503 0.97638 1.23425 0.95441 0.89991 0.96103 1.67352 1.05896 1.41902 1.03925 1.20525 0.93913 0.90222 0.93869 1.20873 1.03173 1.01543 0.88406 1.23207 0.99313 0.99402 0.99028 1.23052 0.97416 1.01952 0.96817 1.22088 0.99807 0.94125 0.99158 1.22028 1.01075 0.79763 0.97400 1.22736 0.99895 0.96391 0.93128 0.91085 0.94212 0.79720 0.93240 0.92638 0.89408 0.89175 0.87210 0.87671 0.80436 0.78032 0.84878 0.89201 0.86047 0.86082 0.89603 0.84575 0.91097 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.68 13.06 21.65 0.28 -59.39 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.23 -12.73 9.97 84.03 0.84 -11.90 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -36.01 5.23 -317.50 -1.66 -37.67 16 10 C 0.17 6.32 3.02 46.14 0.14 6.46 16 11 H 0.05 1.94 7.15 -2.38 -0.02 1.92 16 12 C -0.14 -4.18 6.60 32.00 0.21 -3.97 16 13 C -0.10 -1.84 6.35 31.74 0.20 -1.64 16 14 C -0.09 -1.81 3.91 -9.44 -0.04 -1.85 16 15 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.09 1.46 4.73 86.51 0.41 1.87 16 17 N -0.60 -15.42 3.32 -818.24 -2.72 -18.14 16 18 C 0.57 16.51 7.71 86.88 0.67 17.18 16 19 O -0.58 -22.12 16.99 -3.75 -0.06 -22.18 16 20 C -0.09 -1.99 5.74 -19.88 -0.11 -2.10 16 21 C -0.15 -2.17 8.02 22.63 0.18 -1.99 16 22 C 0.11 1.43 11.17 84.67 0.95 2.37 16 23 N -0.48 -8.93 10.25 -184.04 -1.89 -10.82 16 24 C 0.15 2.97 6.46 42.55 0.27 3.25 16 25 C -0.12 -1.86 6.21 -11.54 -0.07 -1.93 16 26 C -0.17 -2.31 9.80 30.62 0.30 -2.01 16 27 C -0.15 -2.01 10.24 30.62 0.31 -1.69 16 28 C -0.13 -2.94 8.94 22.63 0.20 -2.74 16 29 C 0.12 3.76 6.53 86.51 0.56 4.32 16 30 C -0.10 -3.05 3.60 -9.44 -0.03 -3.09 16 31 H 0.07 2.44 7.80 -2.39 -0.02 2.42 16 32 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.37 19.85 7.59 -92.70 -0.70 19.14 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.30 7.19 -2.39 -0.02 1.29 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.25 5.62 -2.39 -0.01 1.24 16 39 H 0.11 1.20 6.72 -2.39 -0.02 1.18 16 40 H 0.18 1.58 4.88 -2.91 -0.01 1.56 16 41 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 42 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.09 1.43 6.38 -2.39 -0.02 1.42 16 44 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.14 3.22 6.14 -2.91 -0.02 3.20 16 48 H 0.07 2.28 7.13 -2.39 -0.02 2.26 16 49 H 0.05 1.88 7.96 -2.39 -0.02 1.86 16 Total: -1.00 -74.94 388.08 1.73 -73.22 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.28 Total: 30.23 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.46 Total: -3.52 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -5.98 Total: -126.02 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.18 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.94 1.73 -73.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026302829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.815 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds