Wall clock time and date at job start Wed Apr 1 2020 00:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48506 * 109.47009 * 240.00100 * 3 2 1 5 5 H 1.48500 * 109.46978 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47271 * 120.00154 * 3 2 1 7 7 C 1.38810 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.47215 * 125.88727 * 359.97052 * 9 7 2 11 11 C 1.54715 * 107.23909 * 183.76055 * 10 9 7 12 12 C 1.54202 * 102.07083 * 21.51695 * 11 10 9 13 13 H 1.08997 * 108.73395 * 78.17020 * 12 11 10 14 14 C 1.50932 * 112.77675 * 199.86342 * 12 11 10 15 15 N 1.46707 * 111.14103 * 70.07870 * 14 12 11 16 16 C 1.34774 * 121.36003 * 232.19689 * 15 14 12 17 17 O 1.21511 * 119.99933 * 183.80941 * 16 15 14 18 18 C 1.48147 * 120.00147 * 3.81107 * 16 15 14 19 19 C 1.39837 * 120.92508 * 311.49835 * 18 16 15 20 20 C 1.38123 * 119.00678 * 180.02562 * 19 18 16 21 21 N 1.31832 * 120.89822 * 359.97438 * 20 19 18 22 22 C 1.31798 * 122.04511 * 359.97438 * 21 20 19 23 23 C 1.50698 * 119.55284 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.50253 * 265.00654 * 23 22 21 25 25 C 1.52991 * 117.50333 * 196.38152 * 23 22 21 26 26 C 1.38174 * 120.89806 * 0.26179 * 22 21 20 27 27 C 1.47216 * 117.28085 * 52.47556 * 15 14 12 28 28 C 1.52205 * 107.65944 * 301.91569 * 27 15 14 29 29 C 1.48623 * 125.89036 * 179.97438 * 9 7 2 30 30 H 1.09000 * 112.01310 * 31.83949 * 29 9 7 31 31 H 0.97003 * 119.99407 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88759 * 303.16966 * 10 9 7 33 33 H 1.09004 * 109.88721 * 64.19417 * 10 9 7 34 34 H 1.09002 * 110.91281 * 263.32075 * 11 10 9 35 35 H 1.09005 * 110.90924 * 139.71167 * 11 10 9 36 36 H 1.09004 * 109.14670 * 309.65408 * 14 12 11 37 37 H 1.08999 * 109.14721 * 190.51197 * 14 12 11 38 38 H 1.07998 * 120.49545 * 0.03816 * 19 18 16 39 39 H 1.07998 * 119.55371 * 179.97438 * 20 19 18 40 40 H 1.09008 * 115.55789 * 50.69643 * 23 22 21 41 41 H 1.08999 * 117.49698 * 145.01875 * 24 23 22 42 42 H 1.09000 * 117.49709 * 359.97438 * 24 23 22 43 43 H 1.09004 * 117.49862 * 0.02562 * 25 23 22 44 44 H 1.09001 * 117.52421 * 214.97491 * 25 23 22 45 45 H 1.07995 * 120.50258 * 179.73873 * 26 22 21 46 46 H 1.08995 * 109.80653 * 61.19835 * 27 15 14 47 47 H 1.09001 * 109.80402 * 182.07372 * 27 15 14 48 48 H 1.09003 * 108.54143 * 297.35016 * 28 27 15 49 49 H 1.09000 * 109.31628 * 178.32606 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1388 -2.5391 0.0006 11 6 -0.4437 -4.0528 0.0975 12 6 0.8644 -4.6075 0.6968 13 1 0.8729 -4.4040 1.7675 14 6 1.0319 -6.0892 0.4633 15 7 1.2933 -6.3757 -0.9516 16 6 0.5600 -7.2793 -1.6314 17 8 0.8417 -7.5481 -2.7824 18 6 -0.5894 -7.9450 -0.9752 19 6 -0.4604 -8.5147 0.2953 20 6 -1.5578 -9.1259 0.8698 21 7 -2.7133 -9.1757 0.2372 22 6 -2.8781 -8.6507 -0.9605 23 6 -4.2239 -8.7403 -1.6326 24 6 -4.4520 -9.8988 -2.6056 25 6 -4.2808 -8.4748 -3.1382 26 6 -1.8321 -8.0244 -1.6107 27 6 2.3934 -5.6404 -1.5969 28 6 2.0944 -4.1538 -1.4660 29 6 1.9327 -3.7447 0.0005 30 1 2.8831 -3.7669 0.5336 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5651 -2.0193 0.8586 33 1 -0.5535 -2.1332 -0.9222 34 1 -0.6297 -4.4762 -0.8896 35 1 -1.2862 -4.2381 0.7638 36 1 0.1217 -6.6046 0.7701 37 1 1.8668 -6.4533 1.0620 38 1 0.4830 -8.4772 0.8196 39 1 -1.4680 -9.5692 1.8505 40 1 -5.0725 -8.4134 -1.0315 41 1 -5.4505 -10.3341 -2.6446 42 1 -3.6284 -10.5960 -2.7600 43 1 -3.3447 -8.2357 -3.6428 44 1 -5.1666 -7.9734 -3.5282 45 1 -1.9731 -7.6001 -2.5937 46 1 3.3343 -5.8698 -1.0968 47 1 2.4562 -5.9183 -2.6490 48 1 1.1705 -3.9375 -2.0024 49 1 2.9091 -3.5817 -1.9100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036763075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:21 Heat of formation + Delta-G solvation = 67.740718 kcal Electronic energy + Delta-G solvation = -30431.850560 eV Core-core repulsion = 26553.708769 eV Total energy + Delta-G solvation = -3878.141792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11586 -39.86202 -38.27050 -37.19700 -35.30739 -33.20039 -32.52680 -31.50658 -31.03358 -29.48662 -28.29484 -25.83660 -24.84338 -24.39269 -23.57141 -22.75568 -22.25488 -21.51804 -20.11353 -19.96646 -18.46419 -17.49438 -17.06225 -16.78198 -16.34518 -15.92560 -15.55734 -15.20325 -15.02097 -14.78114 -14.55652 -14.35181 -13.93501 -13.77505 -13.67382 -13.12220 -12.99019 -12.68409 -12.60586 -12.07976 -11.96915 -11.80927 -11.69771 -11.58056 -11.38415 -11.10991 -10.97713 -10.84900 -10.73304 -10.71786 -10.35729 -10.15205 -10.04990 -9.95273 -9.83489 -9.71849 -9.63198 -9.48381 -9.07595 -8.67319 -8.54460 -6.88401 -5.73104 -3.06982 0.66939 0.83482 2.57046 2.93511 3.33654 3.38288 3.42798 3.44070 3.62608 3.91602 4.21254 4.45525 4.48079 4.59845 4.65598 4.72736 4.85111 4.86257 4.89849 5.15778 5.21667 5.26952 5.32256 5.35711 5.42784 5.49365 5.54996 5.55308 5.57032 5.63943 5.75228 5.79050 5.81148 5.85541 5.88447 5.90205 5.98709 6.11134 6.29673 6.32087 6.35900 6.46012 6.56813 6.62287 6.85511 7.02603 7.38262 7.52409 7.59290 7.71714 7.79901 8.04114 8.21625 9.18421 9.78380 10.45735 11.38101 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.002930 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.530467 B = 9552.879928 C =10116.533301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.180 3.820 11 C -0.136 4.136 12 C -0.115 4.115 13 H 0.083 0.917 14 C 0.110 3.890 15 N -0.591 5.591 16 C 0.561 3.439 17 O -0.536 6.536 18 C -0.067 4.067 19 C -0.152 4.152 20 C 0.103 3.897 21 N -0.469 5.469 22 C 0.160 3.840 23 C -0.109 4.109 24 C -0.161 4.161 25 C -0.174 4.174 26 C -0.121 4.121 27 C 0.113 3.887 28 C -0.144 4.144 29 C 0.167 3.833 30 H 0.061 0.939 31 H 0.252 0.748 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.163 0.837 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.143 0.857 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.065 0.935 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -19.665 0.231 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.135 4.135 13 H 0.101 0.899 14 C -0.013 4.013 15 N -0.323 5.323 16 C 0.348 3.652 17 O -0.414 6.414 18 C -0.078 4.078 19 C -0.172 4.172 20 C -0.054 4.054 21 N -0.178 5.178 22 C 0.022 3.978 23 C -0.127 4.127 24 C -0.199 4.199 25 C -0.211 4.211 26 C -0.141 4.141 27 C -0.009 4.009 28 C -0.184 4.184 29 C 0.060 3.940 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.161 0.839 39 H 0.180 0.820 40 H 0.142 0.858 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.161 0.839 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.901 -19.904 0.037 20.499 hybrid contribution 1.186 1.511 -0.270 1.940 sum -3.715 -18.393 -0.234 18.766 Atomic orbital electron populations 1.69955 1.04870 1.25113 1.56932 1.24792 0.95690 0.97612 1.02305 0.86218 0.78454 0.83325 0.77858 1.21227 1.21651 1.21203 1.18990 0.90352 0.82372 1.43892 0.90543 1.44912 1.01397 0.99359 1.86789 1.21183 0.84297 0.88178 1.00834 1.22770 0.95561 0.99867 0.99283 1.21891 0.98158 0.92383 1.01114 0.89870 1.21490 1.01834 0.97222 0.80728 1.48026 1.33074 1.39089 1.12122 1.18155 0.81861 0.79477 0.85671 1.90779 1.69974 1.63674 1.16969 1.20302 0.94586 0.98223 0.94736 1.22374 1.01315 0.99019 0.94512 1.22709 0.87451 0.95702 0.99555 1.67256 1.25510 1.16380 1.08631 1.20265 0.93841 0.93284 0.90363 1.20764 0.94619 1.05504 0.91849 1.22972 1.03324 0.91499 1.02056 1.23142 1.04183 0.99173 0.94590 1.21989 0.91647 0.99167 1.01319 1.21678 0.87953 0.92401 0.98872 1.22406 1.02773 0.92618 1.00647 1.21133 0.94542 0.86101 0.92264 0.92121 0.93739 0.93104 0.94701 0.92882 0.92483 0.89551 0.91248 0.83883 0.81956 0.85758 0.88045 0.88691 0.88077 0.87742 0.83943 0.91350 0.89449 0.91618 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.35 55.49 0.57 -26.16 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.12 10.30 -15.06 -0.16 -6.28 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.50 2.90 -161.80 -0.47 -14.97 16 10 C 0.18 4.25 5.12 -2.75 -0.01 4.24 16 11 C -0.14 -2.48 5.89 -25.20 -0.15 -2.63 16 12 C -0.12 -1.83 2.89 -90.53 -0.26 -2.09 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.11 1.36 4.77 -4.97 -0.02 1.34 16 15 N -0.59 -8.25 2.80 -175.66 -0.49 -8.74 16 16 C 0.56 8.39 7.34 -12.19 -0.09 8.30 16 17 O -0.54 -9.63 16.53 5.36 0.09 -9.54 16 18 C -0.07 -0.86 5.11 -104.65 -0.53 -1.39 16 19 C -0.15 -1.54 7.50 -39.03 -0.29 -1.83 16 20 C 0.10 1.00 11.17 -17.59 -0.20 0.81 16 21 N -0.47 -5.51 10.25 -9.52 -0.10 -5.61 16 22 C 0.16 1.87 6.46 -82.63 -0.53 1.33 16 23 C -0.11 -1.04 6.22 -91.78 -0.57 -1.61 16 24 C -0.16 -1.30 10.23 -26.73 -0.27 -1.57 16 25 C -0.17 -1.43 9.79 -26.74 -0.26 -1.69 16 26 C -0.12 -1.50 9.09 -39.02 -0.35 -1.86 16 27 C 0.11 1.63 6.44 -4.06 -0.03 1.60 16 28 C -0.14 -2.51 5.20 -27.08 -0.14 -2.65 16 29 C 0.17 3.13 3.60 -66.20 -0.24 2.89 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 1.34 7.24 -51.93 -0.38 0.97 16 33 H 0.03 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.05 0.98 7.43 -51.93 -0.39 0.59 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.97 4.52 -51.93 -0.23 0.73 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.14 1.14 6.96 -52.49 -0.37 0.77 16 39 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.88 6.38 -51.93 -0.33 0.55 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.14 1.73 6.24 -52.49 -0.33 1.41 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 1.32 7.08 -51.93 -0.37 0.95 16 48 H 0.07 1.32 6.97 -51.93 -0.36 0.96 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -32.23 382.42 -11.21 -43.44 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.34 Total: 2.40 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -4.21 Total: -3.39 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.48 Total: -55.49 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.23 -11.21 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036763075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.182 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds