Wall clock time and date at job start Wed Apr 1 2020 00:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 119.99803 * 2 1 4 4 H 1.48498 * 109.47100 * 95.69638 * 3 2 1 5 5 H 1.48500 * 109.47415 * 335.69514 * 3 2 1 6 6 H 1.48501 * 109.47138 * 215.69606 * 3 2 1 7 7 C 1.38807 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00181 * 29.74464 * 7 2 1 9 9 N 1.36941 * 119.99820 * 209.74425 * 7 2 1 10 10 C 1.48155 * 126.40314 * 2.61711 * 9 7 2 11 11 C 1.55290 * 107.04202 * 175.03562 * 10 9 7 12 12 C 1.53743 * 101.84131 * 337.51903 * 11 10 9 13 13 H 1.09000 * 111.30680 * 281.04183 * 12 11 10 14 14 C 1.52246 * 114.74535 * 152.75701 * 12 11 10 15 15 N 1.47791 * 106.11999 * 189.87715 * 14 12 11 16 16 C 1.34780 * 119.83755 * 232.16084 * 15 14 12 17 17 O 1.21511 * 119.99507 * 5.52173 * 16 15 14 18 18 C 1.48147 * 120.00259 * 185.52057 * 16 15 14 19 19 C 1.39829 * 120.92322 * 42.25154 * 18 16 15 20 20 C 1.38127 * 119.00150 * 180.02562 * 19 18 16 21 21 N 1.31828 * 120.90102 * 0.02562 * 20 19 18 22 22 C 1.31797 * 122.04430 * 359.97438 * 21 20 19 23 23 C 1.50703 * 119.55034 * 179.97438 * 22 21 20 24 24 C 1.52997 * 117.49934 * 163.62327 * 23 22 21 25 25 C 1.52995 * 59.99991 * 252.51055 * 24 23 22 26 26 C 1.38170 * 120.89727 * 359.71780 * 22 21 20 27 27 C 1.46604 * 120.48206 * 52.47460 * 15 14 12 28 28 C 1.53951 * 110.57310 * 311.84079 * 27 15 14 29 29 C 1.45467 * 126.40487 * 182.29930 * 9 7 2 30 30 H 1.08997 * 109.26609 * 93.83966 * 29 9 7 31 31 H 0.97000 * 119.99409 * 185.08710 * 1 2 3 32 32 H 1.09003 * 109.91852 * 294.38362 * 10 9 7 33 33 H 1.09001 * 109.92515 * 55.48924 * 10 9 7 34 34 H 1.09005 * 110.95399 * 95.65115 * 11 10 9 35 35 H 1.08994 * 110.96035 * 219.37767 * 11 10 9 36 36 H 1.08996 * 110.06745 * 309.63715 * 14 12 11 37 37 H 1.09001 * 110.06369 * 71.21242 * 14 12 11 38 38 H 1.08002 * 120.50478 * 0.02562 * 19 18 16 39 39 H 1.08006 * 119.55095 * 179.97438 * 20 19 18 40 40 H 1.09001 * 115.55175 * 309.33003 * 23 22 21 41 41 H 1.09006 * 117.49871 * 0.02562 * 24 23 22 42 42 H 1.08997 * 117.49867 * 145.01576 * 24 23 22 43 43 H 1.09000 * 117.50057 * 252.51364 * 25 24 23 44 44 H 1.08998 * 117.51905 * 107.47704 * 25 24 23 45 45 H 1.07995 * 120.50451 * 180.29527 * 26 22 21 46 46 H 1.09001 * 109.25710 * 191.56292 * 27 15 14 47 47 H 1.08996 * 109.25442 * 72.12456 * 27 15 14 48 48 H 1.09000 * 109.88367 * 291.59474 * 28 27 15 49 49 H 1.09003 * 109.88307 * 170.51670 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6180 1.9769 1.3931 5 1 1.3927 2.6844 -0.5762 6 1 3.4824 1.4779 -0.8169 7 6 2.0103 -1.2021 -0.0005 8 1 1.5770 -2.0757 -0.4650 9 7 3.2444 -1.2805 0.5878 10 6 3.9454 -0.1925 1.3088 11 6 5.2460 -0.8019 1.8991 12 6 4.8963 -2.2980 1.9552 13 1 4.2684 -2.5259 2.8165 14 6 6.0919 -3.2359 1.8616 15 7 5.5354 -4.5942 1.6897 16 6 5.9326 -5.5899 2.5065 17 8 6.6683 -5.3502 3.4434 18 6 5.4722 -6.9767 2.2622 19 6 5.4292 -7.5019 0.9670 20 6 4.9928 -8.7996 0.7847 21 7 4.6199 -9.5389 1.8105 22 6 4.6450 -9.0830 3.0468 23 6 4.2055 -9.9769 4.1777 24 6 4.6021 -9.5668 5.5973 25 6 5.2899 -10.7563 4.9243 26 6 5.0736 -7.7983 3.3207 27 6 4.5584 -4.8692 0.6318 28 6 3.4416 -3.8095 0.6380 29 6 4.1094 -2.4494 0.6273 30 1 4.8085 -2.4078 -0.2079 31 1 -0.4849 -0.8368 0.0745 32 1 4.1932 0.6123 0.6167 33 1 3.3134 0.1891 2.1108 34 1 6.0945 -0.6245 1.2382 35 1 5.4424 -0.4098 2.8969 36 1 6.7141 -2.9647 1.0088 37 1 6.6753 -3.1909 2.7812 38 1 5.7328 -6.9019 0.1218 39 1 4.9556 -9.2141 -0.2120 40 1 3.2382 -10.4616 4.0452 41 1 5.1805 -8.6502 5.7134 42 1 3.8956 -9.7815 6.3991 43 1 5.0358 -11.7537 5.2833 44 1 6.3210 -10.6228 4.5973 45 1 5.0960 -7.4328 4.3367 46 1 4.1203 -5.8539 0.7942 47 1 5.0618 -4.8553 -0.3348 48 1 2.8337 -3.9168 1.5363 49 1 2.8178 -3.9231 -0.2486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036763076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:24 Heat of formation + Delta-G solvation = 71.432420 kcal Electronic energy + Delta-G solvation = -29984.740316 eV Core-core repulsion = 26106.758608 eV Total energy + Delta-G solvation = -3877.981708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.22528 -40.00851 -38.50341 -37.28725 -35.74618 -33.36634 -32.59998 -31.76362 -31.26742 -30.26271 -28.39730 -25.87778 -24.87774 -24.35516 -23.18152 -22.76797 -22.51355 -21.57112 -20.58391 -19.99559 -19.28525 -17.69709 -17.10610 -16.99848 -16.39119 -16.11007 -15.66181 -15.38129 -15.07177 -15.03970 -14.87062 -14.54724 -14.03802 -13.96890 -13.88514 -13.28376 -13.16308 -12.93229 -12.83137 -12.66671 -12.27774 -12.04343 -11.92567 -11.70528 -11.46471 -11.17313 -11.05594 -10.95257 -10.84180 -10.80474 -10.59882 -10.41405 -10.14214 -10.06711 -9.85479 -9.61405 -9.58423 -9.25250 -9.18287 -8.77664 -8.47332 -7.12687 -6.39091 -3.17902 0.53770 0.73886 2.49131 2.76993 3.24999 3.42350 3.50857 3.53395 3.67733 3.82747 4.08593 4.38839 4.50683 4.56600 4.61645 4.64535 4.66509 4.76447 4.80383 4.87502 4.95413 5.09504 5.14333 5.24139 5.27455 5.32040 5.33695 5.39246 5.47817 5.50745 5.52715 5.58186 5.71399 5.73415 5.76306 5.79248 5.82673 5.92353 5.98833 6.05938 6.13507 6.24064 6.26622 6.41607 6.47182 6.60359 6.75715 6.85969 7.19937 7.62613 7.64709 7.90741 8.29197 8.97628 9.58110 10.24044 11.10097 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002667 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.043186 B =10497.209330 C =10927.055666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.014 4.014 3 Si 1.051 2.949 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.332 4.332 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.110 3.890 11 C -0.118 4.118 12 C -0.126 4.126 13 H 0.084 0.916 14 C 0.127 3.873 15 N -0.597 5.597 16 C 0.557 3.443 17 O -0.534 6.534 18 C -0.073 4.073 19 C -0.149 4.149 20 C 0.102 3.898 21 N -0.467 5.467 22 C 0.158 3.842 23 C -0.109 4.109 24 C -0.174 4.174 25 C -0.160 4.160 26 C -0.120 4.120 27 C 0.103 3.897 28 C -0.126 4.126 29 C 0.169 3.831 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.164 0.836 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.144 0.856 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.824 -18.178 5.503 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.215 4.215 3 Si 0.883 3.117 4 H -0.221 1.221 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.458 4.458 8 H 0.099 0.901 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.157 4.157 12 C -0.146 4.146 13 H 0.103 0.897 14 C 0.006 3.994 15 N -0.329 5.329 16 C 0.344 3.656 17 O -0.411 6.411 18 C -0.084 4.084 19 C -0.169 4.169 20 C -0.055 4.055 21 N -0.176 5.176 22 C 0.020 3.980 23 C -0.128 4.128 24 C -0.211 4.211 25 C -0.198 4.198 26 C -0.140 4.140 27 C -0.020 4.020 28 C -0.165 4.165 29 C 0.061 3.939 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.162 0.838 39 H 0.182 0.818 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.162 0.838 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.611 -17.208 5.673 22.076 hybrid contribution 0.389 -0.666 -0.071 0.774 sum 13.001 -17.874 5.602 22.801 Atomic orbital electron populations 1.70904 1.06285 1.29258 1.48639 1.25622 0.95961 1.00746 0.99189 0.84077 0.74253 0.77137 0.76225 1.22114 1.22694 1.22029 1.19951 0.90731 0.98686 1.36429 0.90138 1.44500 1.18345 1.06224 1.63505 1.22091 0.91940 0.92112 0.95348 1.22395 0.98003 0.94471 1.00799 1.22624 0.96933 0.94470 1.00608 0.89729 1.21666 0.95674 0.79157 1.02907 1.48220 1.42377 1.09549 1.32736 1.18285 0.80835 0.84376 0.82060 1.90773 1.37344 1.83542 1.29489 1.20323 0.99109 0.94723 0.94284 1.22464 1.00097 0.97608 0.96747 1.22745 0.94443 0.90208 0.98060 1.67263 1.13743 1.37446 0.99161 1.20290 0.94859 0.91255 0.91573 1.20769 1.00567 1.01949 0.89528 1.23142 1.03830 0.99784 0.94353 1.22973 0.97453 0.96733 1.02623 1.22022 0.98057 0.93843 1.00119 1.22132 0.90037 0.99958 0.89890 1.21845 0.96753 0.94611 1.03336 1.20536 0.91673 0.88100 0.93640 0.96042 0.92649 0.94773 0.93614 0.91329 0.91153 0.90674 0.88852 0.83763 0.81840 0.85760 0.88066 0.87755 0.87997 0.88652 0.83833 0.89656 0.91235 0.91319 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 13.70 55.49 0.76 -27.22 16 2 C -0.01 -0.41 5.44 -17.43 -0.09 -0.50 16 3 Si 1.05 26.20 24.66 -169.99 -4.19 22.01 16 4 H -0.29 -6.92 6.43 56.52 0.36 -6.56 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.29 -6.98 6.56 56.52 0.37 -6.61 16 7 C -0.33 -9.09 10.04 -15.06 -0.15 -9.24 16 8 H 0.08 2.29 7.42 -52.48 -0.39 1.90 16 9 N -0.60 -14.08 3.29 -163.26 -0.54 -14.62 16 10 C 0.11 2.33 4.88 -1.92 -0.01 2.32 16 11 C -0.12 -1.90 6.54 -25.13 -0.16 -2.06 16 12 C -0.13 -2.03 2.84 -89.51 -0.25 -2.28 16 13 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 14 C 0.13 1.74 5.99 -3.72 -0.02 1.71 16 15 N -0.60 -7.98 2.99 -173.43 -0.52 -8.50 16 16 C 0.56 7.85 7.34 -12.19 -0.09 7.76 16 17 O -0.53 -9.00 16.34 5.36 0.09 -8.91 16 18 C -0.07 -0.88 4.99 -104.65 -0.52 -1.40 16 19 C -0.15 -1.45 7.56 -39.03 -0.29 -1.74 16 20 C 0.10 0.96 11.17 -17.59 -0.20 0.76 16 21 N -0.47 -5.24 10.25 -9.52 -0.10 -5.34 16 22 C 0.16 1.72 6.46 -82.63 -0.53 1.19 16 23 C -0.11 -0.96 6.22 -91.77 -0.57 -1.53 16 24 C -0.17 -1.27 9.79 -26.74 -0.26 -1.53 16 25 C -0.16 -1.18 10.23 -26.74 -0.27 -1.45 16 26 C -0.12 -1.38 9.04 -39.02 -0.35 -1.74 16 27 C 0.10 1.27 4.82 -3.49 -0.02 1.25 16 28 C -0.13 -2.07 5.47 -26.98 -0.15 -2.21 16 29 C 0.17 3.14 2.57 -68.13 -0.18 2.96 16 30 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 31 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 32 H 0.03 0.76 4.61 -51.93 -0.24 0.52 16 33 H 0.05 1.04 6.98 -51.93 -0.36 0.68 16 34 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.09 1.30 6.97 -51.93 -0.36 0.93 16 38 H 0.14 1.13 6.71 -52.49 -0.35 0.78 16 39 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.10 0.78 6.38 -51.93 -0.33 0.45 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.14 1.59 6.24 -52.49 -0.33 1.26 16 46 H 0.09 0.95 4.99 -51.93 -0.26 0.69 16 47 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 48 H 0.07 1.23 8.11 -51.93 -0.42 0.80 16 49 H 0.08 1.36 7.62 -51.93 -0.40 0.97 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -33.25 376.41 -10.24 -43.49 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.28 Total: 1.15 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -4.13 Total: -7.73 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.39 Total: -55.67 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -4.19 Total: 22.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.25 -10.24 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036763076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.919 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds