Wall clock time and date at job start Wed Apr 1 2020 00:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99709 * 2 1 4 4 H 1.48496 * 109.47128 * 239.99768 * 3 2 1 5 5 H 1.48503 * 109.47542 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47283 * 119.99750 * 3 2 1 7 7 C 1.38810 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99486 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00348 * 0.02562 * 7 2 1 10 10 C 1.48167 * 126.40449 * 359.97438 * 9 7 2 11 11 C 1.55284 * 107.21167 * 184.81738 * 10 9 7 12 12 C 1.54255 * 101.61160 * 22.53930 * 11 10 9 13 13 H 1.09001 * 112.01687 * 79.22148 * 12 11 10 14 14 C 1.52198 * 114.70703 * 207.19957 * 12 11 10 15 15 N 1.47721 * 106.38589 * 169.56405 * 14 12 11 16 16 C 1.34774 * 119.68117 * 127.94863 * 15 14 12 17 17 O 1.21513 * 120.00019 * 176.25413 * 16 15 14 18 18 C 1.48148 * 120.00178 * 356.25145 * 16 15 14 19 19 C 1.39840 * 120.91860 * 49.59894 * 18 16 15 20 20 C 1.38132 * 119.00112 * 179.97438 * 19 18 16 21 21 N 1.31828 * 120.89651 * 0.02562 * 20 19 18 22 22 C 1.31796 * 122.05207 * 359.97438 * 21 20 19 23 23 C 1.50700 * 119.55721 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49920 * 163.62239 * 23 22 21 25 25 C 1.52995 * 59.99996 * 252.50963 * 24 23 22 26 26 C 1.38178 * 120.89190 * 359.74054 * 22 21 20 27 27 C 1.46591 * 120.63231 * 307.97720 * 15 14 12 28 28 C 1.53949 * 110.58141 * 47.79597 * 27 15 14 29 29 C 1.45460 * 126.40940 * 179.97438 * 9 7 2 30 30 H 1.08995 * 109.27204 * 265.56229 * 29 9 7 31 31 H 0.96997 * 120.00174 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.91517 * 304.26415 * 10 9 7 33 33 H 1.09000 * 109.92089 * 65.36641 * 10 9 7 34 34 H 1.09012 * 110.95191 * 140.71982 * 11 10 9 35 35 H 1.08999 * 110.95700 * 264.43722 * 11 10 9 36 36 H 1.09001 * 110.05655 * 50.34857 * 14 12 11 37 37 H 1.08998 * 110.06465 * 288.78539 * 14 12 11 38 38 H 1.07991 * 120.49879 * 359.97438 * 19 18 16 39 39 H 1.07992 * 119.55343 * 179.97438 * 20 19 18 40 40 H 1.09000 * 115.55033 * 309.33178 * 23 22 21 41 41 H 1.08990 * 117.50202 * 0.02562 * 24 23 22 42 42 H 1.09006 * 117.49490 * 145.02050 * 24 23 22 43 43 H 1.09002 * 117.50249 * 252.51341 * 25 24 23 44 44 H 1.09005 * 117.50142 * 107.49193 * 25 24 23 45 45 H 1.08003 * 120.50134 * 180.28435 * 26 22 21 46 46 H 1.09004 * 109.25506 * 287.50726 * 27 15 14 47 47 H 1.09001 * 109.22355 * 168.06315 * 27 15 14 48 48 H 1.08998 * 109.88285 * 189.48973 * 28 27 15 49 49 H 1.08994 * 109.94461 * 68.43962 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1467 -2.5534 0.0005 11 6 -0.4384 -4.0735 0.1251 12 6 0.8686 -4.5892 0.7618 13 1 0.9016 -4.4025 1.8352 14 6 1.2011 -6.0403 0.4452 15 7 2.5828 -6.2639 0.9176 16 6 2.8492 -7.3029 1.7335 17 8 3.9937 -7.5326 2.0708 18 6 1.7466 -8.1650 2.2193 19 6 0.8052 -8.6958 1.3319 20 6 -0.2062 -9.4953 1.8278 21 7 -0.2907 -9.7585 3.1167 22 6 0.5752 -9.2787 3.9868 23 6 0.4256 -9.6162 5.4479 24 6 1.6326 -9.3732 6.3563 25 6 1.2299 -10.8018 5.9850 26 6 1.6218 -8.4751 3.5767 27 6 3.6667 -5.3660 0.5078 28 6 3.2478 -3.8954 0.6861 29 6 1.9079 -3.7210 0.0005 30 1 1.9790 -4.0825 -1.0252 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5801 -2.0215 0.8475 33 1 -0.5635 -2.1704 -0.9310 34 1 -1.2916 -4.2544 0.7791 35 1 -0.5990 -4.5213 -0.8556 36 1 1.1409 -6.2116 -0.6296 37 1 0.5143 -6.7044 0.9700 38 1 0.8681 -8.4840 0.2748 39 1 -0.9383 -9.9096 1.1505 40 1 -0.5648 -9.4473 5.8704 41 1 2.5346 -8.9688 5.8973 42 1 1.4362 -9.0440 7.3767 43 1 0.7687 -11.4125 6.7611 44 1 1.8673 -11.3377 5.2816 45 1 2.3304 -8.0890 4.2946 46 1 3.9067 -5.5470 -0.5400 47 1 4.5478 -5.5654 1.1178 48 1 3.9878 -3.2408 0.2256 49 1 3.1548 -3.6612 1.7465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036763077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:28 Heat of formation + Delta-G solvation = 67.287508 kcal Electronic energy + Delta-G solvation = -30063.416028 eV Core-core repulsion = 26185.254583 eV Total energy + Delta-G solvation = -3878.161445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15685 -39.87518 -38.32799 -37.24753 -35.40438 -33.30797 -32.61744 -31.64214 -31.10313 -29.61297 -28.16707 -25.73005 -24.85279 -24.49776 -23.42667 -22.71497 -22.14374 -21.44997 -20.21640 -19.91162 -19.18935 -17.53768 -17.08938 -16.69456 -16.20052 -15.89139 -15.69613 -15.15012 -15.01464 -14.93922 -14.59430 -14.46257 -14.01064 -13.81900 -13.56156 -13.23445 -13.12310 -12.64814 -12.61434 -12.41129 -12.03579 -11.80731 -11.66314 -11.60243 -11.47039 -11.03276 -10.85474 -10.84062 -10.78364 -10.72273 -10.44890 -10.20155 -10.10416 -10.04742 -9.93826 -9.70560 -9.67010 -9.46245 -9.08969 -8.66591 -8.66024 -6.88847 -5.75713 -3.09090 0.62961 0.79178 2.51281 2.87234 3.28585 3.37821 3.42518 3.43308 3.57555 3.87358 4.12593 4.43977 4.45772 4.55098 4.60817 4.70130 4.81218 4.84450 4.86374 5.09373 5.15469 5.22961 5.27803 5.31682 5.40194 5.44563 5.48286 5.51897 5.52806 5.57137 5.73334 5.76110 5.79049 5.80699 5.84929 5.87781 6.02991 6.09647 6.16941 6.28176 6.32175 6.38632 6.53794 6.56821 6.74014 6.98444 7.26819 7.49956 7.55074 7.67884 7.76085 7.98668 8.19914 9.15210 9.78632 10.45864 11.36772 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.002674 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.816702 B =10468.142910 C =10609.753642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.127 4.127 13 H 0.080 0.920 14 C 0.108 3.892 15 N -0.594 5.594 16 C 0.556 3.444 17 O -0.536 6.536 18 C -0.069 4.069 19 C -0.150 4.150 20 C 0.104 3.896 21 N -0.468 5.468 22 C 0.159 3.841 23 C -0.109 4.109 24 C -0.174 4.174 25 C -0.161 4.161 26 C -0.123 4.123 27 C 0.116 3.884 28 C -0.129 4.129 29 C 0.168 3.832 30 H 0.020 0.980 31 H 0.253 0.747 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.143 0.857 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 -20.247 5.899 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.147 4.147 13 H 0.098 0.902 14 C -0.014 4.014 15 N -0.326 5.326 16 C 0.343 3.657 17 O -0.414 6.414 18 C -0.080 4.080 19 C -0.171 4.171 20 C -0.053 4.053 21 N -0.178 5.178 22 C 0.022 3.978 23 C -0.128 4.128 24 C -0.211 4.211 25 C -0.198 4.198 26 C -0.143 4.143 27 C -0.006 4.006 28 C -0.168 4.168 29 C 0.060 3.940 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.162 0.838 39 H 0.181 0.819 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.160 0.840 46 H 0.085 0.915 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.416 -20.589 6.318 21.540 hybrid contribution 0.989 1.593 -0.472 1.933 sum 0.573 -18.996 5.846 19.883 Atomic orbital electron populations 1.69920 1.04895 1.25216 1.56900 1.24787 0.95685 0.97650 1.02217 0.86227 0.78497 0.83299 0.77912 1.21167 1.21607 1.21171 1.18948 0.90350 0.82282 1.43949 0.90409 1.44183 1.01597 0.99435 1.86593 1.21524 0.83964 0.88210 1.01075 1.22795 0.95478 0.99843 0.99227 1.22753 0.98189 0.92960 1.00828 0.90155 1.22151 0.81301 0.98148 0.99789 1.48236 1.10255 1.27020 1.47063 1.18290 0.88005 0.80838 0.78617 1.90777 1.21344 1.71015 1.58267 1.20310 0.95399 0.97747 0.94548 1.22398 0.94941 0.98551 1.01183 1.22728 0.96536 0.94506 0.91565 1.67256 1.26503 1.20918 1.03078 1.20270 0.90385 0.92971 0.94218 1.20765 0.98026 1.04955 0.89005 1.23139 0.98329 0.99376 1.00282 1.22974 1.02663 0.91106 1.03068 1.21979 0.99012 0.98304 0.95006 1.21707 0.89298 0.89334 1.00244 1.21892 0.99343 0.93526 1.02029 1.20633 0.91063 0.87232 0.95100 0.96277 0.93676 0.92730 0.94293 0.92025 0.92215 0.90562 0.89329 0.83804 0.81859 0.85763 0.88088 0.87772 0.88020 0.88655 0.83965 0.91547 0.89267 0.90329 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.43 55.49 0.58 -25.95 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.09 9.88 -15.06 -0.15 -6.23 16 8 H 0.08 2.00 7.21 -52.49 -0.38 1.63 16 9 N -0.59 -14.40 3.35 -163.11 -0.55 -14.94 16 10 C 0.18 4.08 5.44 -1.91 -0.01 4.07 16 11 C -0.13 -2.30 6.57 -24.86 -0.16 -2.46 16 12 C -0.13 -2.08 2.87 -89.12 -0.26 -2.34 16 13 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 14 C 0.11 1.39 4.81 -3.78 -0.02 1.37 16 15 N -0.59 -8.34 3.00 -173.52 -0.52 -8.86 16 16 C 0.56 8.13 7.28 -12.19 -0.09 8.04 16 17 O -0.54 -9.38 16.40 5.35 0.09 -9.29 16 18 C -0.07 -0.85 5.02 -104.65 -0.52 -1.38 16 19 C -0.15 -1.51 7.44 -39.02 -0.29 -1.80 16 20 C 0.10 0.99 11.17 -17.59 -0.20 0.79 16 21 N -0.47 -5.35 10.25 -9.52 -0.10 -5.45 16 22 C 0.16 1.78 6.46 -82.63 -0.53 1.24 16 23 C -0.11 -0.98 6.22 -91.77 -0.57 -1.55 16 24 C -0.17 -1.32 9.79 -26.73 -0.26 -1.58 16 25 C -0.16 -1.22 10.23 -26.74 -0.27 -1.49 16 26 C -0.12 -1.46 9.10 -39.02 -0.36 -1.81 16 27 C 0.12 1.70 6.31 -3.50 -0.02 1.67 16 28 C -0.13 -2.21 5.48 -26.99 -0.15 -2.36 16 29 C 0.17 3.23 2.58 -67.99 -0.18 3.05 16 30 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 1.42 7.21 -51.93 -0.37 1.04 16 33 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 34 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 35 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.08 0.88 8.06 -51.93 -0.42 0.47 16 37 H 0.09 1.00 4.56 -51.93 -0.24 0.77 16 38 H 0.14 1.16 7.02 -52.49 -0.37 0.79 16 39 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.81 6.38 -51.93 -0.33 0.48 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.14 1.61 6.24 -52.48 -0.33 1.29 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 1.33 6.98 -51.93 -0.36 0.96 16 48 H 0.08 1.37 7.62 -51.93 -0.40 0.97 16 49 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -31.96 382.97 -11.25 -43.21 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.37 Total: 1.80 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.13 Total: -3.04 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.59 Total: -55.20 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.96 -11.25 -43.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036763077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.501 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds