Wall clock time and date at job start Wed Apr 1 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39911 * 126.00425 * 2 1 4 4 C 1.38322 * 107.12719 * 179.97438 * 3 2 1 5 5 C 1.41355 * 131.72894 * 180.02562 * 4 3 2 6 6 C 1.35519 * 119.55006 * 179.97438 * 5 4 3 7 7 C 1.46445 * 118.96056 * 0.02562 * 6 5 4 8 8 C 1.47497 * 120.20044 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00160 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99724 * 359.97438 * 8 7 6 11 11 C 1.46507 * 119.99828 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.45792 * 60.00226 * 11 10 8 13 13 C 1.53038 * 109.45780 * 300.02487 * 11 10 8 14 14 C 1.53157 * 109.32931 * 301.35819 * 13 11 10 15 15 N 1.46928 * 108.77021 * 305.35865 * 14 13 11 16 16 C 1.36940 * 120.62841 * 233.63354 * 15 14 13 17 17 H 1.07998 * 119.99977 * 151.80951 * 16 15 14 18 18 C 1.38809 * 119.99759 * 331.79926 * 16 15 14 19 19 N 1.31616 * 120.00545 * 343.09806 * 18 16 15 20 20 Si 1.86802 * 119.99632 * 163.09107 * 18 16 15 21 21 H 1.48498 * 109.46882 * 60.00497 * 20 18 16 22 22 H 1.48507 * 109.47294 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47425 * 300.00482 * 20 18 16 24 24 C 1.46920 * 118.73982 * 53.60935 * 15 14 13 25 25 C 1.53041 * 109.45902 * 179.97438 * 11 10 8 26 26 C 1.36307 * 119.60627 * 0.23515 * 7 6 5 27 27 N 1.36534 * 120.64749 * 359.51373 * 26 7 6 28 28 C 1.35277 * 125.99767 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46902 * 270.02879 * 1 2 3 30 30 H 1.09002 * 109.46428 * 30.03173 * 1 2 3 31 31 H 1.08998 * 109.47186 * 150.02682 * 1 2 3 32 32 H 1.08001 * 126.43819 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.22509 * 359.97438 * 5 4 3 34 34 H 1.08006 * 120.51594 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00438 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47626 * 59.99845 * 12 11 10 37 37 H 1.09002 * 109.46974 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47300 * 299.99743 * 12 11 10 39 39 H 1.09003 * 109.49635 * 61.30251 * 13 11 10 40 40 H 1.09001 * 109.49473 * 181.39476 * 13 11 10 41 41 H 1.08999 * 109.59061 * 185.57268 * 14 13 11 42 42 H 1.09002 * 109.70588 * 65.21231 * 14 13 11 43 43 H 0.97004 * 120.00327 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58717 * 186.60595 * 24 15 14 45 45 H 1.08992 * 109.70631 * 66.24957 * 24 15 14 46 46 H 1.08997 * 109.49577 * 178.60316 * 25 11 10 47 47 H 1.09001 * 109.49740 * 298.67228 * 25 11 10 48 48 H 1.07997 * 119.68467 * 179.72398 * 26 7 6 49 49 H 1.08002 * 125.52690 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3295 1.1318 0.0000 4 6 3.6383 0.6843 0.0006 5 6 4.8699 1.3781 0.0013 6 6 6.0308 0.6790 0.0023 7 6 5.9773 -0.7845 0.0021 8 6 7.2241 -1.5725 0.0037 9 8 7.1754 -2.7876 0.0039 10 7 8.4173 -0.9459 0.0049 11 6 9.6557 -1.7286 0.0060 12 6 9.7024 -2.6104 -1.2434 13 6 9.6997 -2.6115 1.2552 14 6 9.6179 -1.7280 2.5036 15 7 10.6847 -0.7196 2.4398 16 6 11.5651 -0.5688 3.4777 17 1 12.5636 -0.2025 3.2900 18 6 11.1741 -0.8865 4.7712 19 7 9.8961 -1.0091 5.0611 20 14 12.4619 -1.1404 6.1004 21 1 13.2585 0.1024 6.2615 22 1 11.7906 -1.4672 7.3841 23 1 13.3602 -2.2573 5.7125 24 6 10.7891 0.1234 1.2411 25 6 10.8576 -0.7813 0.0066 26 6 4.7683 -1.4141 -0.0041 27 7 3.6085 -0.6938 0.0000 28 6 2.3021 -1.0944 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3632 0.8898 -0.5144 31 1 -0.3633 -0.8902 -0.5134 32 1 2.0037 2.1615 -0.0004 33 1 4.8855 2.4580 0.0011 34 1 6.9806 1.1932 0.0033 35 1 8.4562 0.0233 0.0044 36 1 9.6706 -1.9818 -2.1333 37 1 10.6240 -3.1926 -1.2431 38 1 8.8462 -3.2850 -1.2443 39 1 8.8563 -3.3020 1.2426 40 1 10.6322 -3.1758 1.2693 41 1 9.7481 -2.3418 3.3949 42 1 8.6480 -1.2320 2.5400 43 1 9.6229 -1.2307 5.9651 44 1 11.6921 0.7311 1.2993 45 1 9.9160 0.7720 1.1707 46 1 11.7792 -1.3628 0.0325 47 1 10.8388 -0.1691 -0.8950 48 1 4.7274 -2.4933 -0.0088 49 1 1.9598 -2.1188 0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045456986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:15 Heat of formation + Delta-G solvation = 59.954439 kcal Electronic energy + Delta-G solvation = -30143.876392 eV Core-core repulsion = 26265.396961 eV Total energy + Delta-G solvation = -3878.479430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.22421 -40.14763 -37.63291 -36.24089 -34.46763 -33.41596 -32.16309 -31.48960 -30.63653 -29.90888 -28.02099 -27.44705 -27.20994 -24.15843 -23.53060 -22.60232 -22.28213 -21.45356 -20.64098 -19.74330 -18.71529 -17.92507 -17.14680 -16.64633 -16.20209 -15.59105 -15.22986 -14.89885 -14.63229 -14.51199 -14.36138 -13.98538 -13.82727 -13.43351 -13.31070 -13.27417 -13.23755 -13.08521 -13.00050 -12.39078 -12.29020 -11.89304 -11.76610 -11.63943 -11.54935 -11.41083 -11.21715 -10.94036 -10.93368 -10.71762 -10.46625 -10.41792 -10.26096 -9.99763 -9.81791 -9.58380 -9.20235 -8.67737 -8.45421 -8.41725 -7.48917 -6.66301 -5.77965 -3.21451 0.66904 1.08368 2.50994 2.59452 3.02279 3.38021 3.44381 3.45184 3.47814 3.70301 4.38635 4.49379 4.58938 4.69229 4.82969 4.84990 5.07018 5.11860 5.24818 5.34021 5.39462 5.40165 5.49526 5.51177 5.53513 5.58817 5.68431 5.76086 5.86213 5.93484 5.94946 5.99364 6.10673 6.16751 6.18219 6.30518 6.35252 6.43668 6.50285 6.64719 6.71859 6.75171 6.79031 6.83072 6.90729 7.05528 7.15353 7.41191 7.70565 7.79249 7.83701 8.45415 8.46741 9.21598 9.85019 10.41610 11.29836 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002917 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.915875 B = 9596.797612 C =10571.326838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.118 4.118 3 C -0.202 4.202 4 C 0.050 3.950 5 C -0.093 4.093 6 C -0.098 4.098 7 C -0.162 4.162 8 C 0.574 3.426 9 O -0.541 6.541 10 N -0.699 5.699 11 C 0.185 3.815 12 C -0.161 4.161 13 C -0.152 4.152 14 C 0.178 3.822 15 N -0.590 5.590 16 C -0.255 4.255 17 H 0.064 0.936 18 C 0.004 3.996 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.146 3.854 25 C -0.138 4.138 26 C 0.126 3.874 27 N -0.353 5.353 28 C -0.052 4.052 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.397 0.603 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.016 0.984 43 H 0.254 0.746 44 H 0.056 0.944 45 H 0.012 0.988 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.174 0.826 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 2.809 -14.162 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C -0.226 4.226 4 C -0.055 4.055 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.167 4.167 8 C 0.361 3.639 9 O -0.420 6.420 10 N -0.350 5.350 11 C 0.100 3.900 12 C -0.219 4.219 13 C -0.191 4.191 14 C 0.052 3.948 15 N -0.313 5.313 16 C -0.385 4.385 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.019 3.981 25 C -0.178 4.178 26 C 0.003 3.997 27 N -0.018 5.018 28 C -0.179 4.179 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.233 0.767 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.030 0.970 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.191 0.809 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.186 1.707 -13.973 19.288 hybrid contribution 0.736 0.368 0.861 1.191 sum -12.450 2.075 -13.112 18.200 Atomic orbital electron populations 1.20203 0.89481 1.02308 1.01975 1.19476 0.95808 0.92163 1.04733 1.20960 0.89553 0.98766 1.13360 1.18947 0.95619 0.81858 1.09082 1.20469 0.89185 1.00227 1.01308 1.22017 0.98789 0.91564 0.99480 1.20385 0.92978 0.93905 1.09476 1.17529 0.82920 0.86987 0.76481 1.90718 1.87245 1.13277 1.50773 1.45946 1.05189 1.10218 1.73643 1.20311 0.82486 0.91511 0.95720 1.22233 1.02949 1.00219 0.96476 1.22586 1.01731 0.98865 0.95961 1.20677 0.89828 0.89798 0.94494 1.44048 1.34967 1.36880 1.15391 1.19115 0.92286 1.41515 0.85577 0.91802 1.25049 0.95621 1.01757 0.97094 1.70028 1.13504 1.51533 1.19348 0.86388 0.81021 0.78273 0.81163 1.20921 1.21673 1.21035 1.20855 0.98493 0.91894 0.86888 1.22350 0.97239 0.98794 0.99386 1.21695 0.83090 0.98210 0.96695 1.41428 1.05406 1.07073 1.47849 1.21696 0.79757 1.00004 1.16417 0.91510 0.91594 0.91877 0.83776 0.83654 0.84393 0.76681 0.93451 0.92133 0.90764 0.91013 0.92104 0.89819 0.96578 0.93613 0.92577 0.96997 0.90554 0.92582 0.80873 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.37 36.01 0.37 -0.24 16 2 C -0.12 -1.26 6.10 -105.05 -0.64 -1.90 16 3 C -0.20 -2.31 10.91 -38.92 -0.42 -2.73 16 4 C 0.05 0.63 6.71 -83.94 -0.56 0.07 16 5 C -0.09 -1.08 10.09 -39.37 -0.40 -1.47 16 6 C -0.10 -1.21 9.73 -37.25 -0.36 -1.57 16 7 C -0.16 -2.30 5.98 -103.52 -0.62 -2.92 16 8 C 0.57 9.35 7.19 -12.49 -0.09 9.26 16 9 O -0.54 -10.02 12.50 5.27 0.07 -9.95 16 10 N -0.70 -10.87 4.06 -48.61 -0.20 -11.07 16 11 C 0.18 3.06 0.66 -131.78 -0.09 2.98 16 12 C -0.16 -2.38 8.40 37.16 0.31 -2.07 16 13 C -0.15 -3.05 4.66 -26.63 -0.12 -3.18 16 14 C 0.18 4.29 5.04 -3.73 -0.02 4.27 16 15 N -0.59 -14.38 2.99 -172.35 -0.52 -14.89 16 16 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 17 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 19 N -0.90 -26.28 11.20 55.49 0.62 -25.66 16 20 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.15 2.83 6.24 -3.71 -0.02 2.81 16 25 C -0.14 -2.21 4.96 -26.61 -0.13 -2.34 16 26 C 0.13 1.69 10.45 -16.15 -0.17 1.53 16 27 N -0.35 -4.58 2.93 -60.50 -0.18 -4.75 16 28 C -0.05 -0.59 11.49 -16.46 -0.19 -0.78 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.14 1.44 6.58 -52.48 -0.35 1.10 16 35 H 0.40 5.51 5.37 -40.82 -0.22 5.29 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.21 6.16 -51.93 -0.32 0.89 16 39 H 0.07 1.50 6.20 -51.93 -0.32 1.18 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 2.32 6.06 -51.93 -0.31 2.00 16 42 H 0.02 0.42 7.74 -51.93 -0.40 0.01 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 45 H 0.01 0.23 6.94 -51.93 -0.36 -0.13 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.17 2.15 7.56 -52.49 -0.40 1.75 16 49 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -32.11 384.11 -10.12 -42.23 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.29 Total: 6.93 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.38 Total: -5.33 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.27 Total: -56.37 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.11 -10.12 -42.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045456986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.186 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds