Wall clock time and date at job start Wed Apr 1 2020 00:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47123 * 274.98704 * 3 2 1 5 5 H 1.48503 * 109.46990 * 34.99320 * 3 2 1 6 6 H 1.48506 * 109.46926 * 154.98637 * 3 2 1 7 7 C 1.38817 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99621 * 187.10452 * 7 2 1 9 9 N 1.36934 * 120.00204 * 7.09319 * 7 2 1 10 10 C 1.47024 * 125.64700 * 354.79671 * 9 7 2 11 11 C 1.54327 * 107.27213 * 178.97142 * 10 9 7 12 12 C 1.55154 * 102.93853 * 337.80554 * 11 10 9 13 13 H 1.08997 * 111.00995 * 277.42469 * 12 11 10 14 14 N 1.46900 * 111.03690 * 153.58807 * 12 11 10 15 15 C 1.46897 * 111.00389 * 186.38540 * 14 12 11 16 16 C 1.53239 * 109.33946 * 172.75070 * 15 14 12 17 17 N 1.47068 * 108.52437 * 53.83049 * 16 15 14 18 18 C 1.34779 * 120.88483 * 128.79386 * 17 16 15 19 19 O 1.21277 * 120.00704 * 180.02562 * 18 17 16 20 20 C 1.50705 * 119.99738 * 0.02562 * 18 17 16 21 21 F 1.39903 * 110.45523 * 312.60503 * 20 18 17 22 22 C 1.54504 * 110.51112 * 190.00188 * 20 18 17 23 23 C 1.54481 * 104.06093 * 241.35526 * 22 20 18 24 24 O 1.44420 * 104.80526 * 23.98009 * 23 22 20 25 25 C 1.44424 * 105.27370 * 319.48909 * 24 23 22 26 26 C 1.47077 * 118.24014 * 308.81545 * 17 16 15 27 27 C 1.46903 * 110.99944 * 62.08513 * 14 12 11 28 28 C 1.47417 * 125.64990 * 174.82827 * 9 7 2 29 29 H 0.97003 * 120.00002 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.88121 * 298.38982 * 10 9 7 31 31 H 1.08998 * 109.88259 * 59.55281 * 10 9 7 32 32 H 1.09001 * 110.71729 * 96.16405 * 11 10 9 33 33 H 1.08994 * 110.71853 * 219.44443 * 11 10 9 34 34 H 1.08997 * 109.49177 * 292.71132 * 15 14 12 35 35 H 1.08999 * 109.49011 * 52.79060 * 15 14 12 36 36 H 1.08998 * 109.62626 * 294.11589 * 16 15 14 37 37 H 1.09006 * 109.62753 * 173.54526 * 16 15 14 38 38 H 1.08996 * 110.51568 * 359.97438 * 22 20 18 39 39 H 1.09000 * 110.51383 * 122.57726 * 22 20 18 40 40 H 1.08997 * 110.37476 * 142.81385 * 23 22 20 41 41 H 1.09001 * 110.37223 * 265.03128 * 23 22 20 42 42 H 1.09011 * 110.37376 * 281.68190 * 25 24 23 43 43 H 1.08993 * 110.37761 * 159.34599 * 25 24 23 44 44 H 1.09003 * 109.62623 * 291.47859 * 26 17 16 45 45 H 1.08997 * 109.79660 * 170.99024 * 26 17 16 46 46 H 1.09007 * 109.49199 * 307.21942 * 27 14 12 47 47 H 1.09000 * 109.49084 * 67.26634 * 27 14 12 48 48 H 1.08997 * 110.37034 * 322.93688 * 28 9 7 49 49 H 1.09004 * 110.36394 * 85.25940 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0840 -1.2058 0.1151 9 7 1.3334 -2.3835 -0.1475 10 6 -0.1281 -2.5322 -0.2051 11 6 -0.4286 -4.0330 -0.4026 12 6 0.8917 -4.5744 -1.0117 13 1 0.9271 -4.3983 -2.0868 14 7 1.0660 -6.0012 -0.7088 15 6 2.3829 -6.4768 -1.1534 16 6 2.5970 -7.9119 -0.6608 17 7 1.4585 -8.7319 -1.1016 18 6 1.6549 -9.8949 -1.7539 19 8 0.7044 -10.5583 -2.1106 20 6 3.0559 -10.3709 -2.0401 21 9 3.8250 -9.3327 -2.5766 22 6 3.0310 -11.5793 -3.0025 23 6 3.6746 -12.7223 -2.1865 24 8 3.4713 -12.3500 -0.8060 25 6 3.7115 -10.9267 -0.7565 26 6 0.0997 -8.2491 -0.8121 27 6 -0.0161 -6.8007 -1.2987 28 6 1.9496 -3.7168 -0.2735 29 1 -0.4850 0.8401 0.0004 30 1 -0.5732 -2.1845 0.7272 31 1 -0.5261 -1.9610 -1.0439 32 1 -0.6377 -4.5134 0.5533 33 1 -1.2585 -4.1723 -1.0953 34 1 2.4289 -6.4552 -2.2422 35 1 3.1600 -5.8317 -0.7433 36 1 2.6550 -7.9207 0.4276 37 1 3.5200 -8.3099 -1.0826 38 1 2.0055 -11.8328 -3.2710 39 1 3.6180 -11.3680 -3.8963 40 1 3.1778 -13.6684 -2.4015 41 1 4.7392 -12.7946 -2.4091 42 1 4.7822 -10.7222 -0.7583 43 1 3.2431 -10.4933 0.1270 44 1 -0.0824 -8.2902 0.2619 45 1 -0.6309 -8.8693 -1.3313 46 1 -0.9790 -6.3905 -0.9940 47 1 0.0630 -6.7742 -2.3855 48 1 2.8662 -3.6572 -0.8602 49 1 2.1555 -4.1341 0.7122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046055816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:31 Heat of formation + Delta-G solvation = -68.699965 kcal Electronic energy + Delta-G solvation = -31347.793948 eV Core-core repulsion = 27032.966419 eV Total energy + Delta-G solvation = -4314.827529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.64109 -40.69430 -39.40916 -38.41505 -36.75833 -34.37939 -32.33584 -31.99964 -31.44851 -29.91069 -29.13890 -28.01084 -26.21711 -24.47320 -24.14927 -23.70141 -22.78491 -21.15670 -19.94340 -19.90706 -19.44291 -17.94095 -17.42524 -17.19220 -16.83327 -16.24900 -15.76196 -15.68900 -15.48577 -15.13328 -14.83024 -14.75507 -14.58391 -14.41778 -14.24721 -14.01726 -13.61260 -13.17012 -12.94721 -12.68531 -12.50558 -12.31311 -12.19669 -12.07388 -12.05967 -11.80490 -11.62798 -11.39886 -11.32843 -11.19943 -10.89110 -10.83869 -10.51071 -10.16903 -10.11002 -10.04162 -9.96681 -9.94798 -9.69371 -9.03480 -8.57951 -8.19941 -6.83181 -5.72953 -3.05303 1.99401 2.44181 3.27809 3.39554 3.44018 3.44790 3.46860 3.69420 3.82331 3.92012 4.25887 4.50721 4.51926 4.63388 4.69684 4.82026 4.89287 4.96600 5.03900 5.08952 5.15806 5.20162 5.23287 5.32594 5.42591 5.46459 5.50395 5.57914 5.58148 5.67251 5.76497 5.82454 5.85772 5.94074 6.07384 6.15236 6.26913 6.47836 6.50157 6.62860 6.71637 6.96588 7.14139 7.34336 7.55525 7.62211 7.63652 7.82219 8.25472 9.21147 9.81848 10.48255 11.39172 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.002314 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.001000 B =12097.681899 C =12727.300111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.134 4.134 12 C 0.067 3.933 13 H 0.047 0.953 14 N -0.526 5.526 15 C 0.043 3.957 16 C 0.089 3.911 17 N -0.598 5.598 18 C 0.511 3.489 19 O -0.522 6.522 20 C 0.069 3.931 21 F -0.177 7.177 22 C -0.171 4.171 23 C 0.047 3.953 24 O -0.357 6.357 25 C 0.035 3.965 26 C 0.116 3.884 27 C 0.042 3.958 28 C 0.148 3.852 29 H 0.252 0.748 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.035 0.965 48 H 0.034 0.966 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 -24.399 -4.226 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.041 4.041 13 H 0.065 0.935 14 N -0.252 5.252 15 C -0.086 4.086 16 C -0.033 4.033 17 N -0.331 5.331 18 C 0.296 3.704 19 O -0.398 6.398 20 C 0.047 3.953 21 F -0.157 7.157 22 C -0.209 4.209 23 C -0.030 4.030 24 O -0.276 6.276 25 C -0.043 4.043 26 C -0.006 4.006 27 C -0.087 4.087 28 C 0.022 3.978 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.465 -24.674 -3.719 25.544 hybrid contribution 0.618 1.447 -1.148 1.948 sum 6.083 -23.227 -4.867 24.499 Atomic orbital electron populations 1.69978 1.04926 1.25039 1.56778 1.24827 0.95704 0.97672 1.02196 0.86121 0.78700 0.83622 0.77472 1.21661 1.21762 1.20612 1.19047 0.91121 0.82497 1.42994 0.90430 1.44415 1.01771 1.00901 1.86152 1.21144 0.84470 0.88255 1.00816 1.22927 0.94939 0.99482 0.99872 1.22891 0.98763 0.84896 0.97579 0.93525 1.61995 1.01186 1.03215 1.58756 1.22411 0.92998 0.94849 0.98348 1.22418 0.89099 0.90899 1.00917 1.48170 1.08743 1.20454 1.55683 1.20263 0.90287 0.81431 0.78464 1.90701 1.42096 1.54979 1.52002 1.22555 0.89041 0.86955 0.96708 1.92842 1.76322 1.59485 1.87091 1.23552 1.06106 0.92678 0.98579 1.23477 1.00345 0.98455 0.80698 1.89233 1.91033 1.20670 1.26619 1.24004 1.01170 0.82765 0.96348 1.21839 0.82672 0.94293 1.01784 1.22450 0.96615 0.92566 0.97057 1.21472 0.93471 0.86214 0.96660 0.93754 0.93970 0.93577 0.91435 0.92666 0.94447 0.88703 0.90027 0.87926 0.86854 0.88237 0.87875 0.91299 0.89232 0.87287 0.90132 0.88742 0.88878 0.94683 0.94811 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.36 55.49 0.57 -26.45 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.03 29.56 -169.99 -5.02 17.00 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.61 -15.42 3.39 -170.07 -0.58 -16.00 16 10 C 0.18 4.31 5.38 -3.06 -0.02 4.29 16 11 C -0.13 -2.46 5.35 -24.90 -0.13 -2.59 16 12 C 0.07 1.16 2.71 -65.57 -0.18 0.98 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 N -0.53 -7.35 4.53 -223.78 -1.01 -8.37 16 15 C 0.04 0.52 5.48 -3.70 -0.02 0.50 16 16 C 0.09 0.89 5.67 -3.61 -0.02 0.86 16 17 N -0.60 -6.70 3.01 -172.47 -0.52 -7.22 16 18 C 0.51 6.05 6.71 -10.98 -0.07 5.98 16 19 O -0.52 -7.55 14.80 5.56 0.08 -7.47 16 20 C 0.07 0.64 1.17 -90.20 -0.11 0.54 16 21 F -0.18 -1.69 14.21 2.25 0.03 -1.65 16 22 C -0.17 -1.35 6.51 -25.16 -0.16 -1.51 16 23 C 0.05 0.31 7.63 37.93 0.29 0.60 16 24 O -0.36 -3.36 11.65 -35.23 -0.41 -3.77 16 25 C 0.04 0.28 6.30 37.93 0.24 0.52 16 26 C 0.12 1.31 6.59 -3.60 -0.02 1.28 16 27 C 0.04 0.52 5.48 -3.70 -0.02 0.50 16 28 C 0.15 3.02 5.64 -2.53 -0.01 3.00 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.04 1.13 7.61 -51.93 -0.40 0.73 16 31 H 0.05 1.23 7.30 -51.93 -0.38 0.86 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.15 6.79 -51.93 -0.35 0.80 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.88 4.36 -51.93 -0.23 0.66 16 38 H 0.11 1.06 6.55 -51.93 -0.34 0.72 16 39 H 0.10 0.62 8.06 -51.93 -0.42 0.21 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.53 8.13 -51.92 -0.42 0.11 16 43 H 0.11 0.82 7.45 -51.93 -0.39 0.43 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.09 7.07 -51.93 -0.37 0.72 16 46 H 0.09 1.12 6.87 -51.92 -0.36 0.77 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.03 0.67 7.84 -51.93 -0.41 0.26 16 49 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -32.53 374.58 -9.52 -42.05 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.82 Total: -1.92 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.49 Total: 8.15 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -1.53 Total: -58.03 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.33 Total: -11.24 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.03 Total: -1.65 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.53 -9.52 -42.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046055816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.650 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds