Wall clock time and date at job start Wed Apr 1 2020 00:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00308 * 2 1 4 4 H 1.48506 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47280 * 300.00091 * 3 2 1 6 6 H 1.48500 * 109.47115 * 59.99888 * 3 2 1 7 7 C 1.38821 * 119.99392 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99191 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.48384 * 126.56345 * 0.04401 * 9 7 2 11 11 C 1.55473 * 106.97572 * 185.49171 * 10 9 7 12 12 C 1.53128 * 101.19011 * 22.84042 * 11 10 9 13 13 H 1.09008 * 111.75662 * 77.64575 * 12 11 10 14 14 C 1.45029 * 126.56308 * 180.02562 * 9 7 2 15 15 H 1.08999 * 108.69870 * 263.52731 * 14 9 7 16 16 C 1.51076 * 119.19366 * 28.81020 * 14 9 7 17 17 C 1.53868 * 107.34406 * 183.26440 * 16 14 9 18 18 C 1.52717 * 111.52159 * 303.06896 * 17 16 14 19 19 N 1.45723 * 115.92490 * 206.28411 * 12 11 10 20 20 C 1.34777 * 122.22423 * 350.49983 * 19 12 11 21 21 O 1.21274 * 120.00110 * 359.71234 * 20 19 12 22 22 C 1.50701 * 119.99826 * 179.71197 * 20 19 12 23 23 H 1.09003 * 115.56129 * 34.30959 * 22 20 19 24 24 C 1.52996 * 117.49757 * 248.62212 * 22 20 19 25 25 C 1.52997 * 117.50058 * 179.97438 * 22 20 19 26 26 H 1.09005 * 117.51672 * 0.02562 * 25 22 20 27 27 C 1.50696 * 117.50394 * 214.97752 * 25 22 20 28 28 C 1.38651 * 120.79136 * 299.71071 * 27 25 22 29 29 C 1.38197 * 119.16286 * 180.25000 * 28 27 25 30 30 N 1.31867 * 120.76721 * 0.02562 * 29 28 27 31 31 C 1.31874 * 121.72409 * 359.97438 * 30 29 28 32 32 C 1.38200 * 120.76532 * 359.97438 * 31 30 29 33 33 H 0.97001 * 119.99834 * 359.97438 * 1 2 3 34 34 H 1.09004 * 109.95963 * 304.86899 * 10 9 7 35 35 H 1.08997 * 109.95790 * 66.10985 * 10 9 7 36 36 H 1.09002 * 110.98985 * 140.69781 * 11 10 9 37 37 H 1.09003 * 110.98105 * 264.46367 * 11 10 9 38 38 H 1.09003 * 109.88404 * 63.80427 * 16 14 9 39 39 H 1.09000 * 109.94272 * 302.75805 * 16 14 9 40 40 H 1.09001 * 109.07182 * 182.54213 * 17 16 14 41 41 H 1.08997 * 109.01902 * 63.55939 * 17 16 14 42 42 H 1.09004 * 109.16351 * 288.12966 * 18 17 16 43 43 H 1.09001 * 109.12143 * 168.92031 * 18 17 16 44 44 H 1.09007 * 117.49862 * 145.02520 * 24 22 20 45 45 H 1.08998 * 117.52460 * 359.97438 * 24 22 20 46 46 H 1.08006 * 120.41697 * 0.24579 * 28 27 25 47 47 H 1.08001 * 119.61607 * 180.02562 * 29 28 27 48 48 H 1.07997 * 119.61970 * 180.02562 * 31 30 29 49 49 H 1.07999 * 120.42245 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1487 -2.5576 -0.0009 11 6 -0.4306 -4.0799 0.1416 12 6 0.8704 -4.5638 0.7883 13 1 0.9024 -4.3331 1.8532 14 6 1.9022 -3.7187 -0.0005 15 1 1.9344 -4.0856 -1.0264 16 6 3.2556 -3.9353 0.6350 17 6 3.6375 -5.4087 0.4100 18 6 2.5806 -6.3543 0.9766 19 7 1.2245 -5.9559 0.5429 20 6 0.3741 -6.8209 -0.0445 21 8 -0.7298 -6.4504 -0.3835 22 6 0.7950 -8.2487 -0.2799 23 1 1.4490 -8.6775 0.4793 24 6 1.0083 -8.6925 -1.7285 25 6 -0.2154 -9.1817 -0.9503 26 1 -1.1846 -8.7630 -1.2215 27 6 -0.2299 -10.6230 -0.5107 28 6 0.8961 -11.4196 -0.6523 29 6 0.8439 -12.7384 -0.2427 30 7 -0.2594 -13.2403 0.2767 31 6 -1.3488 -12.5124 0.4264 32 6 -1.3710 -11.1855 0.0406 33 1 -0.4850 0.8401 0.0004 34 1 -0.5855 -2.0181 0.8395 35 1 -0.5654 -2.1880 -0.9378 36 1 -1.2830 -4.2595 0.7967 37 1 -0.5865 -4.5409 -0.8338 38 1 3.2013 -3.7254 1.7033 39 1 3.9946 -3.2851 0.1667 40 1 4.5917 -5.6078 0.8979 41 1 3.7403 -5.5896 -0.6599 42 1 2.6289 -6.3338 2.0654 43 1 2.7841 -7.3670 0.6287 44 1 1.8026 -9.4135 -1.9223 45 1 0.8439 -7.9523 -2.5115 46 1 1.8026 -11.0145 -1.0775 47 1 1.7168 -13.3654 -0.3492 48 1 -2.2337 -12.9580 0.8563 49 1 -2.2661 -10.5944 0.1661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049488607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:39 Heat of formation + Delta-G solvation = 67.887510 kcal Electronic energy + Delta-G solvation = -29923.456435 eV Core-core repulsion = 26045.321008 eV Total energy + Delta-G solvation = -3878.135427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.89106 -40.23778 -38.41805 -36.60159 -35.45143 -32.65202 -32.41955 -32.01975 -31.47853 -29.03826 -28.27729 -25.76383 -24.76559 -24.50551 -23.75461 -23.10382 -21.53654 -21.28701 -20.51568 -19.69278 -18.70891 -17.68197 -16.76461 -16.57776 -16.13566 -15.86291 -15.63912 -15.12772 -14.81500 -14.58675 -14.29435 -14.16097 -14.13265 -13.95060 -13.78949 -13.33375 -13.09613 -12.58112 -12.48472 -12.30018 -12.24692 -11.89488 -11.82819 -11.59902 -11.35689 -11.13371 -10.87689 -10.81393 -10.73023 -10.52921 -10.46411 -10.08816 -10.02193 -9.85551 -9.79083 -9.63085 -9.58628 -9.46717 -9.03207 -8.60036 -8.25801 -6.83888 -5.70846 -3.05205 0.81850 0.86509 2.56419 3.03329 3.39146 3.41561 3.44208 3.46997 3.76135 4.06364 4.15520 4.37180 4.47224 4.49254 4.52839 4.71855 4.76228 4.82838 4.89917 4.93652 5.06600 5.19958 5.29738 5.35055 5.36670 5.42700 5.49710 5.57606 5.61261 5.63554 5.66386 5.75713 5.80862 5.85024 5.97454 6.06376 6.09149 6.24378 6.26939 6.37564 6.37924 6.53905 6.70190 6.76343 6.87599 7.15855 7.57422 7.63145 7.66000 7.69155 7.83491 8.24046 8.37903 9.18529 9.82420 10.50512 11.41201 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.002372 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.009211 B =11802.550998 C =12426.533053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.129 4.129 12 C 0.117 3.883 13 H 0.079 0.921 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.111 3.889 19 N -0.595 5.595 20 C 0.544 3.456 21 O -0.531 6.531 22 C -0.169 4.169 23 H 0.123 0.877 24 C -0.140 4.140 25 C -0.094 4.094 26 H 0.132 0.868 27 C -0.004 4.004 28 C -0.175 4.175 29 C 0.100 3.900 30 N -0.492 5.492 31 C 0.100 3.900 32 C -0.163 4.163 33 H 0.252 0.748 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.136 0.864 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 -23.473 0.411 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.167 4.167 12 C 0.013 3.987 13 H 0.097 0.903 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.012 4.012 19 N -0.327 5.327 20 C 0.332 3.668 21 O -0.408 6.408 22 C -0.191 4.191 23 H 0.141 0.859 24 C -0.178 4.178 25 C -0.112 4.112 26 H 0.150 0.850 27 C -0.012 4.012 28 C -0.194 4.194 29 C -0.057 4.057 30 N -0.201 5.201 31 C -0.057 4.057 32 C -0.183 4.183 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.154 0.846 47 H 0.172 0.828 48 H 0.174 0.826 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.254 -23.900 0.488 24.126 hybrid contribution 0.599 1.865 -0.122 1.963 sum 3.854 -22.035 0.366 22.372 Atomic orbital electron populations 1.69960 1.04885 1.24946 1.56863 1.24816 0.95683 0.97652 1.02303 0.86074 0.78675 0.83935 0.77238 1.20542 1.21791 1.21783 1.19029 0.90343 0.82208 1.43811 0.90312 1.44103 1.01789 0.99333 1.86525 1.21758 0.83618 0.88863 1.01105 1.22902 0.94582 0.97927 1.01304 1.22332 0.98771 0.78236 0.99362 0.90266 1.20659 0.91449 0.87269 0.95655 0.96554 1.21426 0.98540 0.94150 1.01319 1.21894 0.97595 0.95733 1.01539 1.21723 0.81703 0.98440 0.99363 1.47930 1.14368 1.10968 1.59430 1.19382 0.84447 0.85469 0.77509 1.90708 1.21037 1.77829 1.51197 1.22411 1.04094 0.93886 0.98691 0.85870 1.23139 0.99053 1.02833 0.92732 1.21105 0.97121 0.89857 1.03157 0.84968 1.19571 0.93438 0.93835 0.94374 1.22075 0.99377 0.95457 1.02533 1.22741 0.96069 0.93056 0.93836 1.67677 0.99894 1.38939 1.13570 1.22776 0.96312 0.90778 0.95789 1.22060 0.99294 0.96789 1.00140 0.93769 0.92555 0.94302 0.92104 0.90016 0.91773 0.91443 0.90911 0.91781 0.91607 0.90313 0.87434 0.87291 0.84634 0.82751 0.82648 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.46 55.49 0.58 -26.58 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.18 9.94 -15.06 -0.15 -6.33 16 8 H 0.08 2.07 7.33 -52.48 -0.38 1.68 16 9 N -0.59 -15.04 3.34 -163.62 -0.55 -15.59 16 10 C 0.17 4.30 5.46 -1.69 -0.01 4.29 16 11 C -0.13 -2.70 4.95 -25.35 -0.13 -2.83 16 12 C 0.12 2.18 3.27 -67.25 -0.22 1.96 16 13 H 0.08 1.52 8.14 -51.92 -0.42 1.09 16 14 C 0.16 3.25 2.59 -68.66 -0.18 3.07 16 15 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 16 16 C -0.12 -1.92 5.44 -27.25 -0.15 -2.07 16 17 C -0.13 -1.53 5.93 -26.42 -0.16 -1.69 16 18 C 0.11 1.23 6.28 -3.45 -0.02 1.21 16 19 N -0.59 -8.89 2.92 -164.51 -0.48 -9.37 16 20 C 0.54 8.10 7.47 -10.98 -0.08 8.01 16 21 O -0.53 -9.72 13.06 5.56 0.07 -9.65 16 22 C -0.17 -1.76 4.69 -91.77 -0.43 -2.19 16 23 H 0.12 1.06 6.93 -51.93 -0.36 0.70 16 24 C -0.14 -1.21 9.59 -26.71 -0.26 -1.47 16 25 C -0.09 -0.92 5.59 -91.75 -0.51 -1.43 16 26 H 0.13 1.49 7.67 -51.93 -0.40 1.09 16 27 C 0.00 -0.04 5.64 -104.32 -0.59 -0.63 16 28 C -0.17 -1.34 9.39 -39.44 -0.37 -1.71 16 29 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 30 N -0.49 -4.88 10.36 -13.26 -0.14 -5.02 16 31 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 32 C -0.16 -1.42 9.84 -39.44 -0.39 -1.81 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 35 H 0.04 1.07 7.81 -51.93 -0.41 0.67 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.79 6.24 -51.93 -0.32 1.47 16 38 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 39 H 0.07 1.17 7.73 -51.93 -0.40 0.77 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.66 5.89 -51.93 -0.31 0.35 16 44 H 0.11 0.66 6.25 -51.93 -0.32 0.34 16 45 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.14 0.75 6.16 -52.48 -0.32 0.42 16 47 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 48 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -33.21 381.64 -11.29 -44.50 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.38 Total: 1.62 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -4.12 Total: -2.64 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.58 Total: -56.56 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.21 -11.29 -44.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049488607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.386 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds