Wall clock time and date at job start Wed Apr 1 2020 00:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00308 * 2 1 4 4 H 1.48506 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47280 * 300.00091 * 3 2 1 6 6 H 1.48500 * 109.47115 * 59.99888 * 3 2 1 7 7 C 1.38821 * 119.99392 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99191 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.48384 * 126.56345 * 0.04401 * 9 7 2 11 11 C 1.55473 * 106.97572 * 185.49171 * 10 9 7 12 12 C 1.53128 * 101.19011 * 22.84042 * 11 10 9 13 13 H 1.09008 * 111.75662 * 77.64575 * 12 11 10 14 14 C 1.45029 * 126.56308 * 180.02562 * 9 7 2 15 15 H 1.08999 * 108.69870 * 263.52731 * 14 9 7 16 16 C 1.51076 * 119.19366 * 28.81020 * 14 9 7 17 17 C 1.53868 * 107.34406 * 183.26440 * 16 14 9 18 18 C 1.52717 * 111.52159 * 303.06896 * 17 16 14 19 19 N 1.45723 * 115.92490 * 206.28411 * 12 11 10 20 20 C 1.34777 * 122.22423 * 350.49983 * 19 12 11 21 21 O 1.21274 * 120.00110 * 359.71234 * 20 19 12 22 22 C 1.50701 * 119.99826 * 179.71197 * 20 19 12 23 23 H 1.09003 * 115.56129 * 34.30959 * 22 20 19 24 24 C 1.52996 * 117.49757 * 248.62212 * 22 20 19 25 25 C 1.52997 * 117.50058 * 179.97438 * 22 20 19 26 26 H 1.09005 * 117.51672 * 0.02562 * 25 22 20 27 27 C 1.50696 * 117.50394 * 214.97752 * 25 22 20 28 28 C 1.38651 * 120.79136 * 299.71071 * 27 25 22 29 29 C 1.38197 * 119.16286 * 180.25000 * 28 27 25 30 30 N 1.31867 * 120.76721 * 0.02562 * 29 28 27 31 31 C 1.31874 * 121.72409 * 359.97438 * 30 29 28 32 32 C 1.38200 * 120.76532 * 359.97438 * 31 30 29 33 33 H 0.97001 * 119.99834 * 359.97438 * 1 2 3 34 34 H 1.09004 * 109.95963 * 304.86899 * 10 9 7 35 35 H 1.08997 * 109.95790 * 66.10985 * 10 9 7 36 36 H 1.09002 * 110.98985 * 140.69781 * 11 10 9 37 37 H 1.09003 * 110.98105 * 264.46367 * 11 10 9 38 38 H 1.09003 * 109.88404 * 63.80427 * 16 14 9 39 39 H 1.09000 * 109.94272 * 302.75805 * 16 14 9 40 40 H 1.09001 * 109.07182 * 182.54213 * 17 16 14 41 41 H 1.08997 * 109.01902 * 63.55939 * 17 16 14 42 42 H 1.09004 * 109.16351 * 288.12966 * 18 17 16 43 43 H 1.09001 * 109.12143 * 168.92031 * 18 17 16 44 44 H 1.09007 * 117.49862 * 145.02520 * 24 22 20 45 45 H 1.08998 * 117.52460 * 359.97438 * 24 22 20 46 46 H 1.08006 * 120.41697 * 0.24579 * 28 27 25 47 47 H 1.08001 * 119.61607 * 180.02562 * 29 28 27 48 48 H 1.07997 * 119.61970 * 180.02562 * 31 30 29 49 49 H 1.07999 * 120.42245 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1487 -2.5576 -0.0009 11 6 -0.4306 -4.0799 0.1416 12 6 0.8704 -4.5638 0.7883 13 1 0.9024 -4.3331 1.8532 14 6 1.9022 -3.7187 -0.0005 15 1 1.9344 -4.0856 -1.0264 16 6 3.2556 -3.9353 0.6350 17 6 3.6375 -5.4087 0.4100 18 6 2.5806 -6.3543 0.9766 19 7 1.2245 -5.9559 0.5429 20 6 0.3741 -6.8209 -0.0445 21 8 -0.7298 -6.4504 -0.3835 22 6 0.7950 -8.2487 -0.2799 23 1 1.4490 -8.6775 0.4793 24 6 1.0083 -8.6925 -1.7285 25 6 -0.2154 -9.1817 -0.9503 26 1 -1.1846 -8.7630 -1.2215 27 6 -0.2299 -10.6230 -0.5107 28 6 0.8961 -11.4196 -0.6523 29 6 0.8439 -12.7384 -0.2427 30 7 -0.2594 -13.2403 0.2767 31 6 -1.3488 -12.5124 0.4264 32 6 -1.3710 -11.1855 0.0406 33 1 -0.4850 0.8401 0.0004 34 1 -0.5855 -2.0181 0.8395 35 1 -0.5654 -2.1880 -0.9378 36 1 -1.2830 -4.2595 0.7967 37 1 -0.5865 -4.5409 -0.8338 38 1 3.2013 -3.7254 1.7033 39 1 3.9946 -3.2851 0.1667 40 1 4.5917 -5.6078 0.8979 41 1 3.7403 -5.5896 -0.6599 42 1 2.6289 -6.3338 2.0654 43 1 2.7841 -7.3670 0.6287 44 1 1.8026 -9.4135 -1.9223 45 1 0.8439 -7.9523 -2.5115 46 1 1.8026 -11.0145 -1.0775 47 1 1.7168 -13.3654 -0.3492 48 1 -2.2337 -12.9580 0.8563 49 1 -2.2661 -10.5944 0.1661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049488607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:38 Heat of formation + Delta-G solvation = 48.318039 kcal Electronic energy + Delta-G solvation = -29924.305031 eV Core-core repulsion = 26045.321008 eV Total energy + Delta-G solvation = -3878.984023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.91928 -41.12959 -39.65325 -37.60279 -36.93736 -34.28637 -33.84658 -32.90690 -32.06011 -30.89269 -29.73663 -27.01416 -26.29718 -25.51247 -24.62226 -24.01532 -22.84944 -22.41587 -21.71621 -21.33183 -19.81442 -18.79808 -18.18554 -17.45796 -17.15106 -16.99904 -16.69506 -16.39693 -16.32323 -15.86893 -15.55505 -15.32421 -15.22031 -14.82774 -14.72160 -14.50375 -14.29272 -14.16835 -13.97786 -13.48807 -13.30288 -13.15701 -12.94092 -12.89389 -12.76317 -12.53469 -12.25500 -12.11770 -12.03237 -11.91048 -11.77565 -11.71877 -11.59464 -11.54351 -11.41996 -10.79362 -10.42354 -10.39506 -10.19301 -10.04347 -9.55855 -8.92817 -7.85571 -5.22607 0.22864 0.24842 1.44733 1.46186 1.50460 1.56456 1.91690 2.49225 2.70047 3.05397 3.23388 3.33276 3.44031 3.58483 3.64284 3.75473 3.79933 3.92687 4.00606 4.02398 4.09454 4.11919 4.20856 4.23016 4.27716 4.30757 4.35066 4.55260 4.58896 4.64308 4.68492 4.80036 4.81054 4.87109 4.96020 4.97467 4.99130 5.03639 5.10948 5.16168 5.16470 5.28740 5.43827 5.46042 5.47626 5.57353 5.60924 5.70920 5.81456 6.16402 6.52909 7.03746 7.07273 7.21263 7.74045 8.44089 9.26490 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.002372 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.009211 B =11802.550998 C =12426.533053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.230 4.230 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.182 3.818 11 C -0.111 4.111 12 C 0.132 3.868 13 H 0.077 0.923 14 C 0.154 3.846 15 H 0.000 1.000 16 C -0.112 4.112 17 C -0.119 4.119 18 C 0.104 3.896 19 N -0.596 5.596 20 C 0.536 3.464 21 O -0.577 6.577 22 C -0.167 4.167 23 H 0.155 0.845 24 C -0.122 4.122 25 C -0.096 4.096 26 H 0.107 0.893 27 C -0.013 4.013 28 C -0.167 4.167 29 C 0.092 3.908 30 N -0.518 5.518 31 C 0.091 3.909 32 C -0.175 4.175 33 H 0.246 0.754 34 H 0.024 0.976 35 H -0.002 1.002 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.146 0.854 45 H 0.094 0.906 46 H 0.165 0.835 47 H 0.181 0.819 48 H 0.171 0.829 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 -26.392 0.892 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.359 4.359 8 H 0.108 0.892 9 N -0.337 5.337 10 C 0.056 3.944 11 C -0.149 4.149 12 C 0.027 3.973 13 H 0.095 0.905 14 C 0.045 3.955 15 H 0.018 0.982 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.017 4.017 19 N -0.328 5.328 20 C 0.326 3.674 21 O -0.457 6.457 22 C -0.188 4.188 23 H 0.172 0.828 24 C -0.159 4.159 25 C -0.115 4.115 26 H 0.125 0.875 27 C -0.021 4.021 28 C -0.186 4.186 29 C -0.064 4.064 30 N -0.227 5.227 31 C -0.065 4.065 32 C -0.195 4.195 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.016 0.984 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.138 0.862 44 H 0.163 0.837 45 H 0.112 0.888 46 H 0.182 0.818 47 H 0.198 0.802 48 H 0.189 0.811 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.920 -26.874 0.977 27.768 hybrid contribution -0.568 2.731 -0.323 2.808 sum 6.352 -24.143 0.654 24.973 Atomic orbital electron populations 1.70194 1.06562 1.25185 1.58585 1.25725 0.96560 1.01279 1.02914 0.84987 0.78396 0.79318 0.76508 1.18404 1.22355 1.21987 1.19457 0.91041 0.83105 1.42272 0.89193 1.44370 1.01970 1.01016 1.86365 1.21451 0.84038 0.91285 0.97615 1.22618 0.96319 0.94808 1.01169 1.21871 0.96100 0.80920 0.98443 0.90518 1.20852 0.94373 0.84853 0.95379 0.98209 1.21419 0.95391 0.97806 1.00478 1.21874 0.99508 0.91991 1.02336 1.22099 0.78862 1.00176 1.00529 1.48027 1.16261 1.09031 1.59467 1.20225 0.83746 0.87213 0.76266 1.90688 1.23128 1.79019 1.52856 1.22340 1.05120 0.90594 1.00704 0.82791 1.23280 0.99123 1.02502 0.90964 1.20964 0.96535 0.90264 1.03723 0.87463 1.19584 0.94195 0.93381 0.94968 1.22317 0.99716 0.94978 1.01607 1.23236 0.96317 0.93742 0.93095 1.67704 1.00751 1.39760 1.14511 1.23046 0.96818 0.90790 0.95877 1.22196 0.99731 0.97076 1.00517 0.94511 0.95725 0.98361 0.92086 0.90996 0.91933 0.92512 0.87034 0.91599 0.89935 0.86156 0.83674 0.88767 0.81757 0.80218 0.81149 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.49 10.46 21.65 0.23 -59.26 16 2 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 3 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.23 -12.87 9.94 84.04 0.84 -12.03 16 8 H 0.09 4.71 7.33 -2.91 -0.02 4.69 16 9 N -0.61 -32.27 3.34 -671.56 -2.25 -34.52 16 10 C 0.18 9.78 5.46 86.87 0.47 10.25 16 11 C -0.11 -4.90 4.95 31.49 0.16 -4.75 16 12 C 0.13 4.95 3.27 45.85 0.15 5.10 16 13 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 14 C 0.15 6.30 2.59 45.31 0.12 6.42 16 15 H 0.00 0.02 8.05 -2.39 -0.02 0.00 16 16 C -0.11 -3.52 5.44 30.26 0.16 -3.35 16 17 C -0.12 -2.31 5.93 30.79 0.18 -2.13 16 18 C 0.10 1.83 6.28 86.03 0.54 2.37 16 19 N -0.60 -16.66 2.92 -792.78 -2.32 -18.97 16 20 C 0.54 15.22 7.47 87.66 0.65 15.87 16 21 O -0.58 -21.60 13.06 -3.01 -0.04 -21.64 16 22 C -0.17 -2.91 4.69 -11.54 -0.05 -2.96 16 23 H 0.15 1.76 6.93 -2.39 -0.02 1.74 16 24 C -0.12 -1.68 9.59 30.61 0.29 -1.39 16 25 C -0.10 -1.70 5.59 -11.53 -0.06 -1.76 16 26 H 0.11 2.45 7.67 -2.38 -0.02 2.43 16 27 C -0.01 -0.21 5.64 -19.67 -0.11 -0.32 16 28 C -0.17 -1.90 9.39 22.36 0.21 -1.69 16 29 C 0.09 1.20 11.18 84.68 0.95 2.15 16 30 N -0.52 -9.24 10.36 -195.85 -2.03 -11.27 16 31 C 0.09 1.46 11.18 84.68 0.95 2.40 16 32 C -0.18 -2.87 9.84 22.36 0.22 -2.65 16 33 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.02 1.45 7.19 -2.39 -0.02 1.44 16 35 H 0.00 -0.11 7.81 -2.39 -0.02 -0.13 16 36 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.07 3.34 6.24 -2.39 -0.01 3.33 16 38 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 39 H 0.06 1.88 7.73 -2.39 -0.02 1.86 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.12 1.20 5.89 -2.39 -0.01 1.19 16 44 H 0.15 0.92 6.25 -2.38 -0.01 0.91 16 45 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.17 0.82 6.16 -2.91 -0.02 0.80 16 47 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 48 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 49 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -78.76 381.64 2.71 -76.06 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.95 Total: 13.56 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.13 Total: 7.81 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -6.36 Total: -124.02 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -78.76 2.71 -76.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049488607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.374 kcal (2) G-P(sol) polarization free energy of solvation -78.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds