Wall clock time and date at job start Wed Apr 1 2020 01:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31694 * 119.71563 * 2 1 4 4 C 1.31929 * 121.88097 * 180.29010 * 3 2 1 5 5 C 1.50700 * 119.46073 * 179.70379 * 4 3 2 6 6 C 1.53005 * 117.51663 * 196.01376 * 5 4 3 7 7 C 1.52998 * 117.49997 * 264.64149 * 5 4 3 8 8 C 1.38347 * 121.07499 * 359.43162 * 4 3 2 9 9 C 1.38356 * 119.30837 * 0.26872 * 8 4 3 10 10 C 1.39518 * 119.71850 * 179.72304 * 2 1 3 11 11 C 1.47838 * 120.56032 * 359.97438 * 10 2 1 12 12 O 1.21559 * 119.99773 * 320.93579 * 11 10 2 13 13 N 1.34770 * 120.00336 * 140.93117 * 11 10 2 14 14 C 1.47411 * 125.58687 * 4.54547 * 13 11 10 15 15 C 1.54865 * 104.81570 * 204.40061 * 14 13 11 16 16 C 1.55171 * 101.73247 * 322.76842 * 15 14 13 17 17 H 1.09005 * 113.25571 * 158.12211 * 16 15 14 18 18 C 1.53751 * 108.31589 * 285.38244 * 16 15 14 19 19 N 1.46384 * 108.44992 * 123.93762 * 18 16 15 20 20 C 1.36932 * 125.49321 * 181.46588 * 19 18 16 21 21 H 1.08007 * 120.00173 * 14.75671 * 20 19 18 22 22 C 1.38818 * 120.00437 * 194.76066 * 20 19 18 23 23 N 1.31620 * 119.99164 * 2.38341 * 22 20 19 24 24 Si 1.86795 * 120.00468 * 182.38359 * 22 20 19 25 25 H 1.48494 * 109.47318 * 94.96496 * 24 22 20 26 26 H 1.48503 * 109.46936 * 214.96870 * 24 22 20 27 27 H 1.48504 * 109.46699 * 334.96213 * 24 22 20 28 28 C 1.46714 * 109.19336 * 1.72165 * 19 18 16 29 29 C 1.46711 * 125.59205 * 184.23748 * 13 11 10 30 30 H 1.09001 * 111.53153 * 56.09742 * 29 13 11 31 31 H 1.09001 * 109.47064 * 264.11035 * 1 2 3 32 32 H 1.08998 * 109.47052 * 24.11107 * 1 2 3 33 33 H 1.09000 * 109.46816 * 144.11254 * 1 2 3 34 34 H 1.09000 * 115.55171 * 50.31308 * 5 4 3 35 35 H 1.08996 * 117.49201 * 214.97406 * 6 5 4 36 36 H 1.09003 * 117.49597 * 359.97438 * 6 5 4 37 37 H 1.09001 * 117.49845 * 359.97438 * 7 5 4 38 38 H 1.08996 * 117.49893 * 144.97253 * 7 5 4 39 39 H 1.08008 * 120.34838 * 180.30238 * 8 4 3 40 40 H 1.08003 * 120.85797 * 179.97438 * 9 8 4 41 41 H 1.08997 * 110.36529 * 323.23304 * 14 13 11 42 42 H 1.09003 * 110.36925 * 85.56552 * 14 13 11 43 43 H 1.08997 * 110.97625 * 80.88069 * 15 14 13 44 44 H 1.09000 * 110.97382 * 204.62533 * 15 14 13 45 45 H 1.08997 * 109.74852 * 244.04928 * 18 16 15 46 46 H 1.09000 * 109.74311 * 4.71334 * 18 16 15 47 47 H 0.97005 * 119.99590 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.98543 * 222.43312 * 28 19 18 49 49 H 1.09001 * 109.98045 * 101.13111 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4782 1.1936 -0.0057 5 6 4.1692 2.5328 -0.0121 6 6 5.6509 2.5619 -0.3928 7 6 4.6001 3.0989 -1.3666 8 6 4.2366 0.0365 -0.0002 9 6 3.5988 -1.1912 0.0058 10 6 2.1987 -1.2117 0.0059 11 6 1.4658 -2.4955 0.0126 12 8 0.4548 -2.6147 0.6771 13 7 1.9183 -3.5337 -0.7179 14 6 3.1742 -3.5571 -1.4893 15 6 2.9432 -4.6219 -2.5899 16 6 2.1138 -5.6889 -1.8274 17 1 1.5303 -6.3321 -2.4863 18 6 3.0595 -6.4559 -0.8887 19 7 2.5381 -6.3577 0.4756 20 6 3.1253 -6.8916 1.5915 21 1 4.1515 -7.2263 1.5541 22 6 2.4016 -7.0028 2.7709 23 7 1.1373 -6.6386 2.8039 24 14 3.2221 -7.6693 4.3110 25 1 3.7178 -6.5389 5.1366 26 1 2.2382 -8.4597 5.0935 27 1 4.3627 -8.5394 3.9271 28 6 1.2814 -5.6007 0.4584 29 6 1.2449 -4.8282 -0.8706 30 1 0.2300 -4.7089 -1.2499 31 1 -0.3633 -0.1055 1.0222 32 1 -0.3633 0.9380 -0.4198 33 1 -0.3633 -0.8326 -0.6024 34 1 3.8299 3.2406 0.7442 35 1 6.2862 3.2888 0.1132 36 1 6.1262 1.6121 -0.6382 37 1 4.3842 2.5025 -2.2531 38 1 4.5439 4.1790 -1.5016 39 1 5.3153 0.0911 0.0000 40 1 4.1662 -2.1102 0.0098 41 1 3.3617 -2.5818 -1.9384 42 1 4.0073 -3.8476 -0.8492 43 1 2.3742 -4.2064 -3.4215 44 1 3.8898 -5.0369 -2.9361 45 1 3.1117 -7.5014 -1.1922 46 1 4.0544 -6.0120 -0.9252 47 1 0.6316 -6.7159 3.6281 48 1 1.2551 -4.9034 1.2956 49 1 0.4342 -6.2841 0.5155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076258170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:54 Heat of formation + Delta-G solvation = 65.696637 kcal Electronic energy + Delta-G solvation = -30590.453848 eV Core-core repulsion = 26712.223418 eV Total energy + Delta-G solvation = -3878.230430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96647 -39.86350 -37.97117 -36.98474 -34.85922 -33.14487 -32.32847 -31.80442 -30.89914 -28.91207 -27.70854 -26.51712 -25.21020 -24.73929 -23.07430 -22.62047 -22.15276 -21.17250 -20.56875 -19.69290 -18.86430 -17.25763 -16.96261 -16.65676 -16.30856 -16.10162 -15.33768 -14.90273 -14.67529 -14.43177 -14.30822 -13.86207 -13.81371 -13.52722 -13.17835 -13.08097 -12.81109 -12.47704 -12.37897 -12.15619 -12.03182 -11.96085 -11.85369 -11.68472 -11.58810 -11.16459 -11.00750 -10.88915 -10.76560 -10.73337 -10.53065 -10.33498 -10.14134 -9.91279 -9.82054 -9.76533 -9.72459 -9.28226 -8.81149 -8.55466 -8.16514 -6.73228 -5.70803 -3.08257 0.71771 1.16029 2.99224 3.26342 3.40250 3.41084 3.44818 3.47774 3.73926 3.93599 4.46827 4.48569 4.55364 4.60031 4.63195 4.71124 4.77292 4.85643 4.98779 5.02326 5.11168 5.31183 5.37194 5.47596 5.49027 5.50375 5.51429 5.55112 5.66104 5.71041 5.72766 5.76866 5.77517 5.79177 5.84189 5.98464 5.99776 6.10153 6.17226 6.19045 6.30792 6.47685 6.53847 6.58331 6.65470 6.84618 7.56725 7.61638 7.84132 7.87460 7.94980 8.32704 8.52511 9.22693 9.84272 10.50519 11.40444 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.003340 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.570069 B = 8382.052833 C = 8801.349008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.185 3.815 3 N -0.484 5.484 4 C 0.175 3.825 5 C -0.109 4.109 6 C -0.173 4.173 7 C -0.161 4.161 8 C -0.184 4.184 9 C -0.039 4.039 10 C -0.175 4.175 11 C 0.575 3.425 12 O -0.518 6.518 13 N -0.592 5.592 14 C 0.099 3.901 15 C -0.124 4.124 16 C -0.108 4.108 17 H 0.098 0.902 18 C 0.142 3.858 19 N -0.597 5.597 20 C -0.237 4.237 21 H 0.074 0.926 22 C -0.001 4.001 23 N -0.910 5.910 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.171 3.829 29 C 0.114 3.886 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.254 0.746 48 H 0.071 0.929 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 15.785 -12.784 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.046 3.954 3 N -0.193 5.193 4 C 0.038 3.962 5 C -0.127 4.127 6 C -0.210 4.210 7 C -0.198 4.198 8 C -0.204 4.204 9 C -0.065 4.065 10 C -0.180 4.180 11 C 0.363 3.637 12 O -0.394 6.394 13 N -0.325 5.325 14 C -0.024 4.024 15 C -0.163 4.163 16 C -0.128 4.128 17 H 0.116 0.884 18 C 0.016 3.984 19 N -0.324 5.324 20 C -0.365 4.365 21 H 0.092 0.908 22 C -0.199 4.199 23 N -0.555 5.555 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.045 3.955 29 C 0.010 3.990 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.586 16.489 -12.149 21.230 hybrid contribution 1.049 -1.255 0.974 1.904 sum 6.635 15.234 -11.175 20.025 Atomic orbital electron populations 1.20774 0.87740 1.02921 1.04315 1.21342 0.97238 0.86295 0.90535 1.67282 1.09128 1.28693 1.14227 1.20438 0.89143 0.93580 0.93066 1.20785 0.96257 0.94963 1.00721 1.23111 0.91004 1.03519 1.03386 1.22960 1.02544 1.01262 0.93052 1.21841 1.01555 0.92267 1.04749 1.21987 0.93311 0.98993 0.92219 1.20853 0.94580 0.95102 1.07482 1.17523 0.84555 0.82138 0.79524 1.90827 1.25410 1.82856 1.40336 1.48185 1.22655 1.13620 1.48090 1.22479 0.87759 0.99052 0.93136 1.22813 1.00768 0.95875 0.96794 1.23063 0.97025 0.96296 0.96398 0.88392 1.21128 0.94613 0.96581 0.86080 1.44079 1.25006 1.62362 1.00911 1.18920 0.94838 1.35077 0.87675 0.90823 1.24939 0.95627 1.00834 0.98527 1.69957 1.07229 1.51923 1.26437 0.86151 0.78174 0.78482 0.83233 1.21664 1.21607 1.20559 1.21312 0.88973 0.93219 0.91982 1.22741 0.95072 0.81854 0.99329 0.90122 0.89238 0.90884 0.90172 0.85960 0.87966 0.88127 0.88653 0.88124 0.84260 0.83735 0.91268 0.90883 0.91056 0.89895 0.96048 0.96018 0.93586 0.91044 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 8.82 36.01 0.32 -1.10 16 2 C 0.18 2.85 6.82 -82.17 -0.56 2.29 16 3 N -0.48 -7.05 10.17 -5.42 -0.06 -7.11 16 4 C 0.18 2.18 6.46 -82.51 -0.53 1.65 16 5 C -0.11 -1.02 6.21 -91.77 -0.57 -1.59 16 6 C -0.17 -1.20 9.79 -26.73 -0.26 -1.46 16 7 C -0.16 -1.21 10.23 -26.73 -0.27 -1.49 16 8 C -0.18 -2.16 9.34 -39.50 -0.37 -2.53 16 9 C -0.04 -0.54 8.06 -38.87 -0.31 -0.85 16 10 C -0.18 -2.82 5.45 -104.82 -0.57 -3.40 16 11 C 0.58 10.94 6.56 -12.34 -0.08 10.86 16 12 O -0.52 -11.63 14.65 5.31 0.08 -11.56 16 13 N -0.59 -10.47 3.01 -163.36 -0.49 -10.96 16 14 C 0.10 1.36 4.75 -2.56 -0.01 1.35 16 15 C -0.12 -1.52 6.31 -24.60 -0.16 -1.67 16 16 C -0.11 -1.72 4.27 -87.87 -0.38 -2.10 16 17 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 18 C 0.14 2.80 6.39 -3.71 -0.02 2.78 16 19 N -0.60 -15.12 3.37 -172.23 -0.58 -15.70 16 20 C -0.24 -6.62 10.21 -15.06 -0.15 -6.77 16 21 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 22 C 0.00 -0.04 5.46 -17.43 -0.10 -0.14 16 23 N -0.91 -27.61 10.56 55.49 0.59 -27.03 16 24 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.17 4.27 4.87 -3.53 -0.02 4.25 16 29 C 0.11 2.17 3.68 -66.21 -0.24 1.93 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.18 6.86 -51.93 -0.36 0.82 16 34 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.65 6.38 -51.93 -0.33 0.32 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.14 1.23 6.23 -52.48 -0.33 0.90 16 40 H 0.15 1.87 5.85 -52.48 -0.31 1.57 16 41 H 0.07 0.81 6.68 -51.93 -0.35 0.46 16 42 H 0.07 1.07 6.67 -51.93 -0.35 0.72 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.41 6.78 -51.93 -0.35 0.06 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.07 2.09 6.27 -51.93 -0.33 1.76 16 49 H 0.04 1.09 7.72 -51.93 -0.40 0.69 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -34.08 381.28 -11.31 -45.39 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.28 Total: 1.74 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -4.29 Total: 2.02 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.54 Total: -60.80 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.08 -11.31 -45.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076258170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.089 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds