Wall clock time and date at job start Wed Apr 1 2020 00:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41589 * 126.13273 * 2 1 4 4 C 1.40103 * 133.38038 * 0.02562 * 3 2 1 5 5 C 1.36438 * 119.83223 * 179.72209 * 4 3 2 6 6 C 1.50695 * 119.69557 * 180.27223 * 5 4 3 7 7 C 1.38942 * 120.61251 * 0.56376 * 5 4 3 8 8 C 1.37676 * 120.65025 * 359.43267 * 7 5 4 9 9 C 1.39231 * 119.80918 * 0.27851 * 8 7 5 10 10 N 1.37477 * 133.18257 * 180.02562 * 9 8 7 11 11 H 0.97000 * 125.60453 * 359.95785 * 10 9 8 12 12 C 1.35865 * 126.14077 * 180.02562 * 2 1 3 13 13 C 1.47058 * 125.42987 * 359.97291 * 12 2 1 14 14 O 1.21652 * 119.99791 * 359.97438 * 13 12 2 15 15 N 1.34770 * 120.00429 * 179.97438 * 13 12 2 16 16 C 1.46498 * 120.00684 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47698 * 179.97438 * 16 15 13 18 18 C 1.53779 * 113.61318 * 274.13859 * 17 16 15 19 19 C 1.53956 * 87.01746 * 220.04630 * 18 17 16 20 20 N 1.46500 * 113.53402 * 270.81065 * 19 18 17 21 21 C 1.36942 * 119.99833 * 252.49088 * 20 19 18 22 22 H 1.07996 * 120.00248 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99776 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00204 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99981 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46952 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47013 * 119.99667 * 25 23 21 28 28 H 1.48498 * 109.46993 * 239.99764 * 25 23 21 29 29 C 1.53773 * 113.61544 * 176.52805 * 17 16 15 30 30 H 1.09000 * 109.47393 * 269.94947 * 1 2 3 31 31 H 1.09001 * 109.47521 * 29.95767 * 1 2 3 32 32 H 1.09004 * 109.47027 * 149.94973 * 1 2 3 33 33 H 1.08004 * 120.08375 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.47430 * 270.28371 * 6 5 4 35 35 H 1.09003 * 109.47073 * 30.28331 * 6 5 4 36 36 H 1.08999 * 109.47009 * 150.28566 * 6 5 4 37 37 H 1.08002 * 119.67790 * 179.71608 * 7 5 4 38 38 H 1.07994 * 120.09336 * 180.30167 * 8 7 5 39 39 H 0.97006 * 119.99516 * 0.02562 * 15 13 12 40 40 H 1.09000 * 109.46630 * 300.00485 * 16 15 13 41 41 H 1.08998 * 109.47117 * 59.99643 * 16 15 13 42 42 H 1.08999 * 112.84790 * 45.33052 * 17 16 15 43 43 H 1.09008 * 113.61378 * 334.56178 * 18 17 16 44 44 H 1.08998 * 113.61966 * 105.46997 * 18 17 16 45 45 H 1.09001 * 113.74472 * 139.94702 * 19 18 17 46 46 H 0.97000 * 120.00296 * 72.49610 * 20 19 18 47 47 H 0.96995 * 120.00015 * 180.02562 * 24 23 21 48 48 H 1.09000 * 113.61541 * 254.52585 * 29 17 16 49 49 H 1.09000 * 113.61802 * 25.43237 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3419 1.1435 0.0000 4 6 2.0869 2.5212 0.0005 5 6 3.1271 3.4040 0.0061 6 6 2.8493 4.8851 0.0127 7 6 4.4403 2.9501 -0.0004 8 6 4.7168 1.6014 -0.0009 9 6 3.6723 0.6808 -0.0007 10 7 3.6294 -0.6933 -0.0006 11 1 4.4000 -1.2824 -0.0013 12 6 2.3083 -1.0972 -0.0005 13 6 1.8434 -2.4924 -0.0005 14 8 0.6515 -2.7363 0.0003 15 7 2.7375 -3.5007 -0.0016 16 6 2.2745 -4.8906 -0.0022 17 6 3.4817 -5.8305 -0.0040 18 6 4.0289 -6.1276 -1.4101 19 6 4.2247 -7.5803 -0.9393 20 7 5.5319 -7.8250 -0.3248 21 6 6.4789 -8.5514 -0.9962 22 1 6.2623 -8.9435 -1.9789 23 6 7.7173 -8.7837 -0.4137 24 7 7.9812 -8.3062 0.7841 25 14 9.0094 -9.7739 -1.3298 26 1 8.4688 -10.1938 -2.6476 27 1 10.2197 -8.9383 -1.5354 28 1 9.3670 -10.9763 -0.5350 29 6 3.1038 -7.3187 0.0806 30 1 -0.3634 -0.0009 1.0276 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5146 33 1 1.0694 2.8834 0.0005 34 1 2.7787 5.2462 -1.0133 35 1 1.9094 5.0761 0.5307 36 1 3.6589 5.4043 0.5257 37 1 5.2522 3.6623 -0.0005 38 1 5.7408 1.2586 -0.0011 39 1 3.6879 -3.3061 -0.0019 40 1 1.6725 -5.0733 0.8879 41 1 1.6717 -5.0723 -0.8920 42 1 4.2501 -5.5338 0.7099 43 1 3.2850 -6.0210 -2.1997 44 1 4.9621 -5.6107 -1.6337 45 1 3.9650 -8.3245 -1.6922 46 1 5.7266 -7.4725 0.5577 47 1 8.8466 -8.4682 1.1910 48 1 3.2913 -7.7619 1.0586 49 1 2.1066 -7.5384 -0.3007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091306536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:46 Heat of formation + Delta-G solvation = 38.677744 kcal Electronic energy + Delta-G solvation = -28223.001858 eV Core-core repulsion = 24343.599801 eV Total energy + Delta-G solvation = -3879.402057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.90749 -39.69969 -38.56145 -37.45272 -34.94551 -33.49379 -33.19039 -31.86375 -30.35176 -30.04662 -28.16636 -26.73223 -26.42509 -25.13925 -24.16777 -23.46125 -21.80298 -21.66286 -20.84620 -19.52042 -18.71919 -18.23288 -17.41843 -17.24286 -16.13649 -15.75041 -15.45490 -15.24100 -14.99533 -14.71930 -14.42636 -14.17192 -14.10457 -13.89974 -13.73460 -13.56470 -13.22541 -12.97569 -12.90985 -12.86011 -12.46126 -12.37826 -12.27661 -11.99486 -11.78726 -11.50751 -11.37930 -11.13230 -11.10751 -10.91332 -10.56658 -10.28756 -10.17633 -9.93074 -9.88066 -9.76107 -9.56345 -9.17680 -8.95467 -8.37875 -7.89848 -7.06738 -5.87180 -3.16390 0.52323 1.31265 1.87911 2.65788 2.98751 3.16613 3.36909 3.43204 3.45154 3.57538 4.36022 4.49997 4.50962 4.62950 4.71057 4.90059 4.91449 4.96400 5.01520 5.09691 5.14780 5.29904 5.32624 5.34382 5.38807 5.52407 5.52847 5.61249 5.63215 5.67451 5.70162 5.78385 5.86193 5.87342 5.96151 6.02535 6.14032 6.18893 6.24086 6.29681 6.32231 6.41632 6.48610 6.51023 6.66000 6.81196 6.81700 6.96318 7.10283 7.34795 7.63776 7.98392 8.31944 9.42824 9.99847 10.33945 11.35225 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.002026 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.546554 B =13814.822751 C =15467.501877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.076 4.076 3 C -0.114 4.114 4 C -0.060 4.060 5 C -0.120 4.120 6 C -0.108 4.108 7 C -0.086 4.086 8 C -0.129 4.129 9 C 0.113 3.887 10 N -0.578 5.578 11 H 0.419 0.581 12 C 0.012 3.988 13 C 0.580 3.420 14 O -0.523 6.523 15 N -0.721 5.721 16 C 0.131 3.869 17 C -0.121 4.121 18 C -0.169 4.169 19 C 0.167 3.833 20 N -0.706 5.706 21 C -0.242 4.242 22 H 0.073 0.927 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.909 3.091 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.147 4.147 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.397 0.603 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.069 0.931 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 23.740 -0.869 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.079 4.079 5 C -0.121 4.121 6 C -0.165 4.165 7 C -0.106 4.106 8 C -0.149 4.149 9 C 0.002 3.998 10 N -0.182 5.182 11 H 0.258 0.742 12 C -0.097 4.097 13 C 0.367 3.633 14 O -0.400 6.400 15 N -0.371 5.371 16 C 0.009 3.991 17 C -0.140 4.140 18 C -0.210 4.210 19 C 0.055 3.945 20 N -0.344 5.344 21 C -0.374 4.374 22 H 0.091 0.909 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.186 4.186 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.777 23.226 -0.979 26.526 hybrid contribution 1.968 -0.585 -0.093 2.055 sum -10.808 22.641 -1.072 25.111 Atomic orbital electron populations 1.20393 0.88650 1.03233 1.02497 1.19518 0.96020 0.89610 1.03329 1.18069 0.91863 0.93487 1.08402 1.20215 0.98903 0.90312 0.98484 1.19368 0.92945 0.95911 1.03846 1.20721 1.02190 0.91496 1.02103 1.20765 0.96219 0.94277 0.99335 1.20092 0.96949 0.91893 1.06007 1.18307 0.95620 0.82822 1.03023 1.41887 1.06818 1.05358 1.64152 0.74247 1.19987 0.83160 0.93893 1.12673 1.17184 0.86152 0.82894 0.77089 1.90804 1.15277 1.83712 1.50212 1.45980 1.09480 1.06866 1.74798 1.21550 0.97053 0.78395 1.02123 1.22722 0.96426 0.94942 0.99869 1.23927 1.00244 1.02415 0.94422 1.21094 0.86276 0.93307 0.93839 1.42180 1.09647 1.62907 1.19682 1.19343 0.92931 1.25409 0.99671 0.90901 1.24774 0.98033 1.01279 0.96830 1.69669 1.23022 1.50110 1.15249 0.86094 0.81678 0.79474 0.78802 1.20468 1.21844 1.21781 1.23436 0.99733 0.93929 1.01551 0.91257 0.91950 0.89578 0.85897 0.91498 0.91734 0.91735 0.85571 0.85786 0.76930 0.91418 0.91175 0.88966 0.91332 0.91589 0.91859 0.78145 0.93470 0.91240 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.76 36.00 0.35 -0.61 16 2 C -0.08 -0.91 6.18 -104.20 -0.64 -1.56 16 3 C -0.11 -1.29 6.11 -106.93 -0.65 -1.94 16 4 C -0.06 -0.57 9.68 -39.53 -0.38 -0.95 16 5 C -0.12 -1.00 5.84 -105.01 -0.61 -1.61 16 6 C -0.11 -0.62 9.99 36.00 0.36 -0.26 16 7 C -0.09 -0.71 9.66 -39.53 -0.38 -1.09 16 8 C -0.13 -1.17 10.08 -39.42 -0.40 -1.57 16 9 C 0.11 1.22 7.25 -83.97 -0.61 0.61 16 10 N -0.58 -5.91 6.07 -7.35 -0.04 -5.95 16 11 H 0.42 3.31 8.12 -40.82 -0.33 2.97 16 12 C 0.01 0.14 6.97 -82.29 -0.57 -0.43 16 13 C 0.58 7.73 7.80 -12.69 -0.10 7.63 16 14 O -0.52 -8.27 14.57 5.23 0.08 -8.20 16 15 N -0.72 -8.55 5.55 -61.50 -0.34 -8.89 16 16 C 0.13 1.67 5.50 -4.04 -0.02 1.65 16 17 C -0.12 -1.71 3.62 -89.81 -0.33 -2.04 16 18 C -0.17 -2.69 7.44 -25.83 -0.19 -2.88 16 19 C 0.17 3.15 4.57 -67.03 -0.31 2.84 16 20 N -0.71 -16.92 5.31 -52.55 -0.28 -17.20 16 21 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 25 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C -0.15 -2.25 7.39 -25.92 -0.19 -2.45 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.04 6.32 -51.93 -0.33 0.71 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 36 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.40 4.02 7.53 -40.82 -0.31 3.72 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.07 0.98 7.92 -51.92 -0.41 0.57 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 46 H 0.38 9.76 7.90 -40.82 -0.32 9.43 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -31.85 404.04 -11.29 -43.14 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -7.56 Total: 12.59 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -4.93 Total: -11.79 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.06 Total: -58.69 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.85 -11.29 -43.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091306536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.819 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds