Wall clock time and date at job start Wed Apr 1 2020 00:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00402 * 2 1 4 4 H 1.48496 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46727 * 299.99685 * 3 2 1 6 6 H 1.48495 * 109.47062 * 59.99650 * 3 2 1 7 7 C 1.38817 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99844 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.32701 * 53.81355 * 10 9 7 12 12 C 1.53032 * 109.32831 * 294.34613 * 10 9 7 13 13 C 1.53976 * 108.82108 * 295.14497 * 12 10 9 14 14 H 1.09004 * 112.98976 * 169.00056 * 13 12 10 15 15 C 1.56594 * 106.91530 * 293.89293 * 13 12 10 16 16 C 1.55161 * 99.84052 * 72.75562 * 15 13 12 17 17 H 1.09002 * 112.48927 * 163.43696 * 16 15 13 18 18 C 1.52985 * 109.32646 * 173.45462 * 10 9 7 19 19 N 1.47797 * 104.25365 * 41.32293 * 16 15 13 20 20 C 1.34776 * 125.85679 * 153.53169 * 19 16 15 21 21 O 1.21519 * 120.00139 * 5.69953 * 20 19 16 22 22 C 1.48143 * 120.00031 * 185.70118 * 20 19 16 23 23 C 1.39837 * 120.92284 * 353.31434 * 22 20 19 24 24 C 1.38124 * 119.00361 * 179.97438 * 23 22 20 25 25 N 1.31824 * 120.89880 * 0.02562 * 24 23 22 26 26 C 1.31791 * 122.04990 * 359.72347 * 25 24 23 27 27 C 1.50705 * 119.55851 * 180.28784 * 26 25 24 28 28 C 1.52998 * 117.49867 * 163.86815 * 27 26 25 29 29 C 1.53001 * 117.49359 * 95.24677 * 27 26 25 30 30 C 1.38174 * 120.89281 * 0.54555 * 26 25 24 31 31 C 1.47077 * 108.28329 * 333.79172 * 19 16 15 32 32 H 0.97007 * 120.00002 * 0.02562 * 1 2 3 33 33 H 0.96995 * 119.99870 * 359.97438 * 9 7 2 34 34 H 1.09005 * 109.57590 * 54.94098 * 12 10 9 35 35 H 1.09000 * 109.58396 * 175.34202 * 12 10 9 36 36 H 1.09005 * 110.79924 * 315.42059 * 15 13 12 37 37 H 1.09000 * 112.14335 * 190.62910 * 15 13 12 38 38 H 1.09004 * 109.53174 * 305.29239 * 18 10 9 39 39 H 1.09003 * 109.53620 * 185.06537 * 18 10 9 40 40 H 1.08002 * 120.49863 * 0.02562 * 23 22 20 41 41 H 1.08005 * 119.55213 * 180.02562 * 24 23 22 42 42 H 1.09000 * 115.54556 * 309.58453 * 27 26 25 43 43 H 1.08995 * 117.50277 * 0.02562 * 28 27 26 44 44 H 1.09003 * 117.49525 * 145.02764 * 28 27 26 45 45 H 1.09003 * 117.49803 * 214.98147 * 29 27 26 46 46 H 1.08995 * 117.50232 * 0.02562 * 29 27 26 47 47 H 1.08004 * 120.50249 * 179.74667 * 30 26 25 48 48 H 1.08998 * 109.97506 * 120.20491 * 31 19 16 49 49 H 1.09000 * 109.97959 * 241.48590 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6568 0.0027 11 1 2.7641 -3.6649 0.8330 12 6 2.8266 -3.7990 -1.3128 13 6 1.8162 -3.8985 -2.4704 14 1 2.2829 -3.8105 -3.4516 15 6 1.0386 -5.2446 -2.2821 16 6 0.1512 -4.8704 -1.0656 17 1 -0.6828 -5.5591 -0.9304 18 6 1.0688 -4.8122 0.1683 19 7 -0.2963 -3.4913 -1.3522 20 6 -1.4282 -2.9181 -0.8975 21 8 -2.1315 -3.5092 -0.1021 22 6 -1.8149 -1.5674 -1.3673 23 6 -0.9553 -0.8130 -2.1719 24 6 -1.3562 0.4416 -2.5878 25 7 -2.5296 0.9286 -2.2360 26 6 -3.3715 0.2493 -1.4832 27 6 -4.7015 0.8578 -1.1199 28 6 -5.7837 -0.0798 -0.5808 29 6 -5.9052 0.4971 -1.9927 30 6 -3.0491 -1.0113 -1.0181 31 6 0.7022 -2.8539 -2.2238 32 1 -0.4850 0.8401 -0.0004 33 1 0.3554 -2.3880 0.0023 34 1 3.4648 -2.9275 -1.4589 35 1 3.4379 -4.7010 -1.2831 36 1 1.7236 -6.0562 -2.0365 37 1 0.4312 -5.4934 -3.1523 38 1 0.4670 -4.6514 1.0628 39 1 1.6163 -5.7504 0.2599 40 1 0.0073 -1.2058 -2.4644 41 1 -0.6994 1.0318 -3.2099 42 1 -4.6605 1.8675 -0.7113 43 1 -5.5336 -1.1366 -0.4885 44 1 -6.4550 0.3130 0.1829 45 1 -6.6566 1.2694 -2.1578 46 1 -5.7354 -0.1805 -2.8293 47 1 -3.7421 -1.5607 -0.3983 48 1 0.2378 -2.5499 -3.1619 49 1 1.1340 -1.9870 -1.7237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094957230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:47 Heat of formation + Delta-G solvation = 122.231370 kcal Electronic energy + Delta-G solvation = -32594.220256 eV Core-core repulsion = 28718.441356 eV Total energy + Delta-G solvation = -3875.778900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.19876 -39.44873 -37.60801 -36.47377 -34.34263 -33.29570 -31.53348 -31.26675 -30.53267 -29.91141 -27.77231 -25.65185 -24.01898 -23.77538 -23.70861 -22.20118 -21.36633 -21.31262 -20.38399 -19.40862 -18.45422 -17.51339 -16.69256 -16.04949 -15.62759 -15.14283 -14.96714 -14.76691 -14.44720 -14.30687 -13.93546 -13.81065 -13.53616 -13.23258 -13.11326 -12.73027 -12.62563 -12.43093 -12.12393 -11.86289 -11.77866 -11.62457 -11.50788 -11.33002 -11.21996 -11.01273 -10.84774 -10.75314 -10.35412 -10.26670 -10.23163 -10.12444 -9.85539 -9.84238 -9.60372 -9.41514 -8.91394 -8.74143 -8.49764 -7.97726 -7.81328 -6.77469 -5.92515 -3.24639 1.74625 2.06355 3.31622 3.38268 3.42808 3.52740 3.68265 4.06985 4.42113 4.68913 4.73928 4.78607 4.95057 5.10946 5.14005 5.22226 5.31187 5.43810 5.49756 5.57528 5.61242 5.61791 5.63868 5.67893 5.72934 5.78679 5.92271 5.94808 5.97868 6.02308 6.06924 6.13648 6.21415 6.23566 6.29998 6.37233 6.39555 6.44955 6.52316 6.58003 6.69040 6.73561 6.77701 6.85537 6.95640 7.07660 7.22575 7.50524 7.57041 8.14891 8.19106 8.83167 8.84653 9.30277 9.86626 10.25634 11.17084 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.005749 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.882291 B = 4869.537261 C = 6441.158775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.018 4.018 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.074 0.926 9 N -0.727 5.727 10 C 0.171 3.829 11 H 0.035 0.965 12 C -0.127 4.127 13 C -0.094 4.094 14 H 0.087 0.913 15 C -0.130 4.130 16 C 0.135 3.865 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.591 5.591 20 C 0.584 3.416 21 O -0.559 6.559 22 C -0.063 4.063 23 C -0.068 4.068 24 C 0.074 3.926 25 N -0.467 5.467 26 C 0.110 3.890 27 C -0.088 4.088 28 C -0.178 4.178 29 C -0.170 4.170 30 C -0.100 4.100 31 C 0.060 3.940 32 H 0.262 0.738 33 H 0.393 0.607 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.159 0.841 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.126 0.874 48 H 0.043 0.957 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -6.257 -6.871 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.215 4.215 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.092 0.908 9 N -0.377 5.377 10 C 0.061 3.939 11 H 0.053 0.947 12 C -0.167 4.167 13 C -0.113 4.113 14 H 0.106 0.894 15 C -0.168 4.168 16 C 0.032 3.968 17 H 0.106 0.894 18 C -0.173 4.173 19 N -0.324 5.324 20 C 0.376 3.624 21 O -0.439 6.439 22 C -0.074 4.074 23 C -0.091 4.091 24 C -0.085 4.085 25 N -0.177 5.177 26 C -0.028 4.028 27 C -0.106 4.106 28 C -0.215 4.215 29 C -0.207 4.207 30 C -0.121 4.121 31 C -0.062 4.062 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.176 0.824 41 H 0.158 0.842 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.144 0.856 48 H 0.061 0.939 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.097 -5.575 -6.606 8.895 hybrid contribution 0.675 0.245 0.671 0.983 sum -1.422 -5.330 -5.935 8.103 Atomic orbital electron populations 1.69732 1.04530 1.26031 1.53789 1.24742 0.95661 0.97472 1.03583 0.86177 0.78686 0.84222 0.77552 1.20733 1.21453 1.21970 1.19425 0.91542 0.84252 1.41254 0.90833 1.43730 1.07292 0.99794 1.86871 1.20215 0.92594 0.86469 0.94577 0.94697 1.22246 0.97337 1.00779 0.96352 1.22722 0.95906 0.93947 0.98677 0.89449 1.23242 0.98299 0.97847 0.97417 1.22135 0.95715 0.84040 0.94913 0.89404 1.22264 0.98071 0.98824 0.98172 1.48445 1.20830 1.13500 1.49642 1.17912 0.78960 0.85260 0.80267 1.90680 1.53308 1.65175 1.34708 1.19483 0.95095 0.94120 0.98713 1.23066 0.99140 0.94464 0.92392 1.22227 0.92760 0.93607 0.99860 1.66939 1.03689 1.35834 1.11224 1.19684 0.94396 0.91193 0.97481 1.20594 0.86674 0.99467 1.03903 1.23050 1.01744 0.99848 0.96905 1.22914 1.00008 1.03469 0.94341 1.21642 0.96396 0.95579 0.98476 1.23678 0.88275 1.01481 0.92736 0.92719 0.76365 0.91207 0.93011 0.90356 0.91360 0.91597 0.91289 0.82395 0.84249 0.86958 0.88293 0.88606 0.88861 0.89054 0.85583 0.93940 0.81286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.84 8.11 55.49 0.45 -22.39 16 2 C -0.02 -0.45 5.34 -17.43 -0.09 -0.54 16 3 Si 0.90 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.24 -5.58 7.74 -15.06 -0.12 -5.69 16 8 H 0.07 1.73 7.58 -52.48 -0.40 1.33 16 9 N -0.73 -16.04 2.82 -53.41 -0.15 -16.19 16 10 C 0.17 3.11 3.16 -67.92 -0.21 2.90 16 11 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 12 C -0.13 -1.93 5.19 -26.21 -0.14 -2.07 16 13 C -0.09 -1.33 4.31 -87.28 -0.38 -1.70 16 14 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.13 -1.67 6.27 -23.65 -0.15 -1.82 16 16 C 0.14 2.19 3.91 -65.62 -0.26 1.94 16 17 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 18 C -0.13 -2.23 5.41 -26.28 -0.14 -2.37 16 19 N -0.59 -11.14 1.70 -162.98 -0.28 -11.41 16 20 C 0.58 12.79 5.93 -12.19 -0.07 12.71 16 21 O -0.56 -13.52 16.77 5.35 0.09 -13.43 16 22 C -0.06 -1.34 4.61 -104.65 -0.48 -1.82 16 23 C -0.07 -1.36 5.86 -39.03 -0.23 -1.59 16 24 C 0.07 1.47 10.48 -17.60 -0.18 1.28 16 25 N -0.47 -9.44 10.25 -9.52 -0.10 -9.54 16 26 C 0.11 2.13 6.46 -82.63 -0.53 1.60 16 27 C -0.09 -1.41 6.22 -91.77 -0.57 -1.98 16 28 C -0.18 -2.43 9.79 -26.73 -0.26 -2.69 16 29 C -0.17 -2.25 10.23 -26.73 -0.27 -2.53 16 30 C -0.10 -2.06 8.93 -39.02 -0.35 -2.41 16 31 C 0.06 1.04 3.45 -2.84 -0.01 1.03 16 32 H 0.26 6.95 7.98 -40.82 -0.33 6.62 16 33 H 0.39 9.28 3.32 -40.82 -0.14 9.14 16 34 H 0.07 1.14 7.45 -51.93 -0.39 0.75 16 35 H 0.05 0.67 8.01 -51.93 -0.42 0.25 16 36 H 0.08 0.86 7.81 -51.93 -0.41 0.45 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 40 H 0.16 3.10 2.96 -52.70 -0.16 2.95 16 41 H 0.14 2.47 8.06 -52.48 -0.42 2.05 16 42 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 43 H 0.10 1.41 6.39 -51.93 -0.33 1.08 16 44 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.13 2.54 5.95 -52.48 -0.31 2.23 16 48 H 0.04 0.70 6.61 -51.93 -0.34 0.35 16 49 H 0.17 3.45 2.61 -53.63 -0.14 3.31 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -28.08 359.79 -10.82 -38.91 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -6.79 Total: 18.92 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -4.45 Total: -5.74 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.08 Total: -59.53 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.08 -10.82 -38.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094957230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.137 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds