Wall clock time and date at job start Wed Apr 1 2020 00:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39919 * 126.00106 * 2 1 4 4 C 1.38324 * 107.12562 * 180.02562 * 3 2 1 5 5 C 1.41354 * 131.72911 * 179.97438 * 4 3 2 6 6 C 1.35520 * 119.55195 * 179.77375 * 5 4 3 7 7 C 1.46454 * 118.95798 * 0.48259 * 6 5 4 8 8 C 1.47491 * 120.20141 * 179.79022 * 7 6 5 9 9 O 1.21602 * 120.00293 * 179.71853 * 8 7 6 10 10 N 1.34783 * 119.99678 * 359.71835 * 8 7 6 11 11 C 1.46496 * 119.99709 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.02111 * 326.38949 * 11 10 8 13 13 C 1.53882 * 110.07309 * 87.81040 * 11 10 8 14 14 C 1.54267 * 106.59905 * 119.30308 * 13 11 10 15 15 C 1.54889 * 104.19467 * 23.60979 * 14 13 11 16 16 H 1.08999 * 110.91491 * 80.44193 * 15 14 13 17 17 C 1.53001 * 110.75493 * 203.73936 * 15 14 13 18 18 N 1.46490 * 109.47264 * 288.32759 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.54271 * 110.02885 * 204.99850 * 11 10 8 28 28 C 1.36311 * 119.59953 * 359.50601 * 7 6 5 29 29 N 1.36525 * 120.65735 * 0.23683 * 28 7 6 30 30 C 1.35278 * 125.99945 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46999 * 89.97704 * 1 2 3 32 32 H 1.08993 * 109.47635 * 209.97594 * 1 2 3 33 33 H 1.09000 * 109.46869 * 329.98027 * 1 2 3 34 34 H 1.08001 * 126.43764 * 0.03420 * 3 2 1 35 35 H 1.08001 * 120.22207 * 0.03047 * 5 4 3 36 36 H 1.08000 * 120.52340 * 180.26585 * 6 5 4 37 37 H 0.97005 * 119.99773 * 359.97438 * 10 8 7 38 38 H 1.09004 * 110.02606 * 238.58771 * 13 11 10 39 39 H 1.09002 * 110.03061 * 359.96704 * 13 11 10 40 40 H 1.08991 * 110.48623 * 264.93368 * 14 13 11 41 41 H 1.09000 * 110.48373 * 142.28652 * 14 13 11 42 42 H 1.09003 * 109.46836 * 168.32466 * 17 15 14 43 43 H 1.08999 * 109.47071 * 48.33505 * 17 15 14 44 44 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 45 45 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 46 46 H 1.08998 * 110.48457 * 98.37987 * 27 11 10 47 47 H 1.08997 * 110.48626 * 335.73699 * 27 11 10 48 48 H 1.08007 * 119.67193 * 180.25364 * 28 7 6 49 49 H 1.07995 * 125.52404 * 359.97254 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6383 0.6845 -0.0006 5 6 4.8698 1.3783 -0.0013 6 6 6.0308 0.6792 0.0029 7 6 5.9773 -0.7843 -0.0027 8 6 7.2241 -1.5723 -0.0031 9 8 7.1755 -2.7874 -0.0025 10 7 8.4174 -0.9456 -0.0039 11 6 9.6557 -1.7283 -0.0048 12 1 9.5159 -2.6486 0.5622 13 6 10.0716 -2.0572 -1.4494 14 6 11.4587 -1.4174 -1.6651 15 6 12.0440 -1.2890 -0.2368 16 1 12.4585 -2.2389 0.1007 17 6 13.1043 -0.1873 -0.1824 18 7 14.3081 -0.6328 -0.8884 19 6 15.3977 0.1924 -0.9720 20 1 15.3697 1.1715 -0.5172 21 6 16.5382 -0.2295 -1.6415 22 7 16.5721 -1.4226 -2.1963 23 14 18.0248 0.8960 -1.7549 24 1 19.1035 0.2161 -2.5161 25 1 17.6435 2.1509 -2.4515 26 1 18.5089 1.2160 -0.3881 27 6 10.8046 -0.9002 0.6069 28 6 4.7683 -1.4139 -0.0018 29 7 3.6085 -0.6937 -0.0005 30 6 2.3021 -1.0944 -0.0005 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5134 33 1 -0.3633 0.8898 0.5141 34 1 2.0036 2.1616 0.0005 35 1 4.8854 2.4582 -0.0010 36 1 6.9806 1.1933 0.0067 37 1 8.4561 0.0237 -0.0047 38 1 10.1336 -3.1372 -1.5833 39 1 9.3517 -1.6349 -2.1505 40 1 11.3581 -0.4349 -2.1259 41 1 12.0862 -2.0648 -2.2777 42 1 13.3515 0.0280 0.8571 43 1 12.7167 0.7138 -0.6578 44 1 14.3332 -1.5120 -1.2973 45 1 15.8003 -2.0071 -2.1370 46 1 10.9548 -1.1700 1.6522 47 1 10.5984 0.1660 0.5129 48 1 4.7275 -2.4932 -0.0018 49 1 1.9599 -2.1187 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700891713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:01 Heat of formation + Delta-G solvation = 35.776450 kcal Electronic energy + Delta-G solvation = -28022.836382 eV Core-core repulsion = 24143.308515 eV Total energy + Delta-G solvation = -3879.527867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.55478 -40.24391 -38.24507 -36.65068 -35.11063 -33.94392 -33.38673 -31.92721 -31.02251 -28.79316 -28.56571 -28.01822 -27.07831 -24.30875 -23.59326 -22.93088 -22.42127 -21.49449 -20.52376 -20.08183 -19.52604 -18.29594 -17.32140 -17.20228 -16.69813 -16.42916 -15.92662 -15.61632 -15.19811 -14.86248 -14.77490 -14.58602 -14.14940 -13.72249 -13.60011 -13.51810 -13.45552 -13.34318 -13.26397 -13.12457 -12.57761 -12.27548 -12.08270 -11.88993 -11.81538 -11.67526 -11.34412 -10.96387 -10.81298 -10.78468 -10.65109 -10.54681 -10.35824 -10.27141 -10.25686 -9.96598 -9.27779 -9.14642 -8.86354 -8.76116 -7.82270 -6.98210 -6.09193 -3.08339 0.28559 0.72529 2.15072 2.24995 2.63550 2.98209 3.26029 3.51875 3.55611 3.73186 4.03014 4.19933 4.35101 4.42721 4.52249 4.58304 4.64297 4.72826 4.79858 4.85406 4.95576 5.09014 5.24513 5.27249 5.31438 5.36811 5.48040 5.49214 5.53149 5.55143 5.58806 5.62946 5.65102 5.75105 5.80956 5.83102 5.96146 6.00689 6.05078 6.08354 6.21648 6.34649 6.44111 6.46814 6.48846 6.50698 6.71598 6.81935 6.83610 7.22903 7.81622 7.91397 8.77423 9.25354 10.11708 10.27025 11.39536 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031069 B = 0.001625 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.992031 B =17223.394920 C =17772.717502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.114 4.114 3 C -0.196 4.196 4 C 0.045 3.955 5 C -0.087 4.087 6 C -0.106 4.106 7 C -0.171 4.171 8 C 0.572 3.428 9 O -0.542 6.542 10 N -0.712 5.712 11 C 0.141 3.859 12 H 0.093 0.907 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.097 4.097 16 H 0.078 0.922 17 C 0.167 3.833 18 N -0.743 5.743 19 C -0.332 4.332 20 H 0.063 0.937 21 C -0.046 4.046 22 N -0.944 5.944 23 Si 1.080 2.920 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.295 1.295 27 C -0.121 4.121 28 C 0.133 3.867 29 N -0.355 5.355 30 C -0.050 4.050 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.175 0.825 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.538 3.690 5.778 33.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.221 4.221 4 C -0.059 4.059 5 C -0.106 4.106 6 C -0.126 4.126 7 C -0.177 4.177 8 C 0.358 3.642 9 O -0.420 6.420 10 N -0.363 5.363 11 C 0.037 3.963 12 H 0.111 0.889 13 C -0.172 4.172 14 C -0.150 4.150 15 C -0.117 4.117 16 H 0.096 0.904 17 C 0.040 3.960 18 N -0.388 5.388 19 C -0.463 4.463 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.590 5.590 23 Si 0.911 3.089 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.159 4.159 28 C 0.010 3.990 29 N -0.020 5.020 30 C -0.176 4.176 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.192 0.808 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -30.872 2.974 5.298 31.465 hybrid contribution -1.493 0.122 0.479 1.573 sum -32.366 3.096 5.778 33.023 Atomic orbital electron populations 1.20229 0.89260 1.02561 1.02114 1.19532 0.95979 0.92088 1.04255 1.21037 0.89526 0.98951 1.12553 1.18956 0.95679 0.81812 1.09467 1.20503 0.89148 1.00352 1.00604 1.21975 0.98829 0.91337 1.00458 1.20256 0.92654 0.93927 1.10886 1.17673 0.83129 0.87025 0.76354 1.90808 1.87376 1.13372 1.50479 1.46074 1.05333 1.10430 1.74464 1.21766 0.82195 0.95177 0.97137 0.88939 1.22594 0.97676 1.01350 0.95593 1.22353 0.94485 1.01051 0.97092 1.22292 0.94434 1.00236 0.94696 0.90361 1.20563 0.86412 0.93804 0.95232 1.42345 1.12207 1.18169 1.66115 1.20037 0.94126 0.98585 1.33549 0.91860 1.25772 1.00539 1.00097 0.97927 1.70883 1.32405 1.08555 1.47150 0.83242 0.75719 0.74124 0.75830 1.21022 1.22312 1.22290 1.22626 0.93790 0.99803 0.99694 1.21724 0.83157 0.98279 0.95825 1.41441 1.05410 1.07093 1.48077 1.21758 0.79637 1.00160 1.16031 0.91381 0.91715 0.91419 0.83556 0.83476 0.84321 0.76398 0.91236 0.91663 0.91457 0.91277 0.96400 0.96302 0.79993 0.93424 0.90851 0.90857 0.80819 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.37 36.00 0.37 -0.05 16 2 C -0.11 -0.89 6.10 -105.05 -0.64 -1.53 16 3 C -0.20 -1.63 10.91 -38.92 -0.42 -2.06 16 4 C 0.04 0.41 6.71 -83.94 -0.56 -0.15 16 5 C -0.09 -0.66 10.09 -39.37 -0.40 -1.06 16 6 C -0.11 -0.81 9.73 -37.25 -0.36 -1.18 16 7 C -0.17 -1.66 5.98 -103.51 -0.62 -2.28 16 8 C 0.57 6.58 7.76 -12.49 -0.10 6.49 16 9 O -0.54 -7.99 15.94 5.28 0.08 -7.91 16 10 N -0.71 -7.15 4.94 -53.77 -0.27 -7.41 16 11 C 0.14 1.65 3.24 -66.81 -0.22 1.43 16 12 H 0.09 1.18 7.56 -51.93 -0.39 0.79 16 13 C -0.13 -1.70 6.59 -25.61 -0.17 -1.86 16 14 C -0.11 -1.66 6.20 -25.07 -0.16 -1.81 16 15 C -0.10 -1.50 2.91 -88.62 -0.26 -1.76 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 17 C 0.17 3.31 5.70 -4.05 -0.02 3.29 16 18 N -0.74 -18.75 5.52 -59.91 -0.33 -19.08 16 19 C -0.33 -9.46 9.99 -15.06 -0.15 -9.62 16 20 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 22 N -0.94 -29.41 13.70 55.49 0.76 -28.65 16 23 Si 1.08 26.04 29.92 -169.99 -5.09 20.95 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.30 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.12 -1.42 5.97 -25.07 -0.15 -1.57 16 28 C 0.13 1.27 10.45 -16.16 -0.17 1.10 16 29 N -0.36 -3.34 2.93 -60.50 -0.18 -3.52 16 30 C -0.05 -0.40 11.49 -16.46 -0.19 -0.59 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.14 0.73 6.58 -52.49 -0.35 0.38 16 37 H 0.40 3.06 6.46 -40.82 -0.26 2.79 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.82 7.92 -51.93 -0.41 0.40 16 40 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.38 7.99 -51.93 -0.41 -0.03 16 44 H 0.37 9.46 6.50 -40.82 -0.27 9.19 16 45 H 0.25 7.80 6.77 -40.82 -0.28 7.52 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.78 7.64 -51.93 -0.40 0.39 16 48 H 0.17 1.49 7.56 -52.48 -0.40 1.09 16 49 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 400.02 15.07 6.03 6.03 Total: -1.00 -35.08 400.02 -10.73 -45.80 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.43 Total: 8.42 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.31 Total: -14.64 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.01 Total: -58.66 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.08 Total: -7.91 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.08 -10.73 -45.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700891713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.581 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds