Wall clock time and date at job start Wed Apr 1 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47077 * 2 1 4 4 C 1.37790 * 120.11471 * 264.99676 * 3 2 1 5 5 C 1.38782 * 120.67257 * 179.97438 * 4 3 2 6 6 C 1.36665 * 120.52508 * 0.02653 * 5 4 3 7 7 C 1.39592 * 119.76338 * 359.97438 * 6 5 4 8 8 C 1.46496 * 134.03105 * 179.97438 * 7 6 5 9 9 C 1.50697 * 126.50348 * 0.02562 * 8 7 6 10 10 C 1.50697 * 109.47056 * 85.00096 * 9 8 7 11 11 O 1.21281 * 120.00229 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00339 * 179.97438 * 10 9 8 13 13 C 1.46959 * 120.59932 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63871 * 235.20765 * 13 12 10 15 15 N 1.46965 * 108.63565 * 310.57503 * 14 13 12 16 16 C 1.36933 * 120.59269 * 235.20157 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84734 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57485 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46963 * 118.81113 * 55.47589 * 15 14 13 25 25 C 1.46965 * 120.59194 * 359.97438 * 12 10 9 26 26 C 1.34235 * 106.99373 * 180.28342 * 8 7 6 27 27 N 1.36835 * 109.93997 * 359.57095 * 26 8 7 28 28 H 0.96998 * 125.06171 * 180.18722 * 27 26 8 29 29 C 1.37689 * 109.87239 * 0.44563 * 27 26 8 30 30 H 1.08994 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47368 * 300.00313 * 1 2 3 32 32 H 1.09008 * 109.46883 * 59.99966 * 1 2 3 33 33 H 1.08994 * 109.47368 * 239.99687 * 2 1 3 34 34 H 1.08997 * 109.47030 * 119.99321 * 2 1 3 35 35 H 1.07998 * 119.66148 * 359.95655 * 4 3 2 36 36 H 1.07997 * 119.73844 * 180.02562 * 5 4 3 37 37 H 1.08002 * 120.11829 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47090 * 325.00492 * 9 8 7 39 39 H 1.09003 * 109.47391 * 205.00264 * 9 8 7 40 40 H 1.09005 * 109.61247 * 115.45920 * 13 12 10 41 41 H 1.09011 * 109.60878 * 354.95512 * 13 12 10 42 42 H 1.08999 * 109.61043 * 190.82664 * 14 13 12 43 43 H 1.09006 * 109.61118 * 70.32327 * 14 13 12 44 44 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.61152 * 64.26553 * 24 15 14 46 46 H 1.08995 * 109.61009 * 184.78048 * 24 15 14 47 47 H 1.08993 * 109.61066 * 244.54092 * 25 12 10 48 48 H 1.09000 * 109.60917 * 4.87853 * 25 12 10 49 49 H 1.08004 * 125.02871 * 179.73667 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0380 -1.1874 5 6 2.8240 3.3462 -1.2009 6 6 2.9629 4.0454 -0.0349 7 6 2.6360 3.4397 1.1795 8 6 2.6624 3.8799 2.5765 9 6 3.0938 5.2323 3.0823 10 6 1.9316 6.1890 3.0118 11 8 0.8585 5.8098 2.5927 12 7 2.0842 7.4658 3.4156 13 6 0.9599 8.4100 3.3520 14 6 1.3928 9.6334 2.5348 15 7 2.6866 10.1063 3.0469 16 6 2.8418 11.4036 3.4571 17 1 3.5713 11.6465 4.2155 18 6 2.0654 12.4070 2.8941 19 7 1.4367 12.1934 1.7577 20 14 1.9129 14.0608 3.7494 21 1 2.7112 14.0460 5.0015 22 1 2.4195 15.1305 2.8524 23 1 0.4872 14.3207 4.0737 24 6 3.8126 9.1637 3.1053 25 6 3.3781 7.9388 3.9273 26 6 2.2350 2.8480 3.3211 27 7 1.9279 1.7861 2.5146 28 1 1.5960 0.9289 2.8242 29 6 2.1655 2.1139 1.1986 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.2570 1.4981 -2.1169 36 1 3.0766 3.8153 -2.1402 37 1 3.3244 5.0630 -0.0530 38 1 3.9107 5.6071 2.4658 39 1 3.4293 5.1438 4.1156 40 1 0.6863 8.7215 4.3602 41 1 0.1070 7.9314 2.8704 42 1 0.6484 10.4232 2.6363 43 1 1.4940 9.3555 1.4857 44 1 0.8944 12.8948 1.3641 45 1 4.0822 8.8529 2.0958 46 1 4.6666 9.6431 3.5835 47 1 3.2772 8.2167 4.9764 48 1 4.1218 7.1480 3.8284 49 1 2.1441 2.8557 4.3973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073099934.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:44 Heat of formation + Delta-G solvation = 43.568188 kcal Electronic energy + Delta-G solvation = -29541.810632 eV Core-core repulsion = 25662.620641 eV Total energy + Delta-G solvation = -3879.189992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.38147 -39.39516 -37.28104 -36.65683 -34.50787 -33.82834 -32.41434 -31.13531 -30.33850 -29.32183 -29.00937 -27.47415 -26.34638 -24.07347 -23.58526 -22.73003 -21.86497 -21.68919 -20.74266 -19.21855 -18.19872 -17.75626 -17.06638 -16.36308 -16.04191 -15.52341 -15.22820 -14.86102 -14.76676 -14.68356 -14.54672 -14.02633 -13.73533 -13.63764 -13.45637 -13.24457 -13.04177 -12.97720 -12.79615 -12.49731 -12.42010 -12.10674 -11.83884 -11.65137 -11.47017 -11.40189 -11.20442 -11.11710 -10.82488 -10.68820 -10.65035 -10.52209 -10.21432 -9.94305 -9.80057 -9.54116 -9.12819 -8.57155 -8.16628 -8.14486 -7.55364 -6.68487 -5.82907 -3.28383 1.13798 1.68563 2.62321 3.10026 3.13778 3.34915 3.42753 3.44624 3.63182 3.94725 4.45676 4.55581 4.66047 4.78509 4.94784 5.01387 5.08322 5.11952 5.14362 5.26347 5.29181 5.33717 5.36746 5.49067 5.56446 5.60636 5.66548 5.72982 5.78733 5.81547 5.90929 5.93334 5.94425 5.98000 6.17346 6.21175 6.39271 6.43483 6.54806 6.55235 6.65284 6.71630 6.74166 6.81548 6.94338 7.19403 7.31472 7.50403 7.58668 7.74374 8.02919 8.38243 8.72758 9.13980 9.76928 10.33913 11.24291 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.002341 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.677895 B =11960.329629 C =12304.168552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.099 4.099 4 C -0.101 4.101 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.087 4.087 8 C -0.143 4.143 9 C -0.064 4.064 10 C 0.508 3.492 11 O -0.545 6.545 12 N -0.601 5.601 13 C 0.088 3.912 14 C 0.159 3.841 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.130 3.870 25 C 0.089 3.911 26 C 0.057 3.943 27 N -0.594 5.594 28 H 0.412 0.588 29 C 0.103 3.897 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.022 0.978 44 H 0.255 0.745 45 H 0.023 0.977 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -23.885 0.513 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.101 4.101 4 C -0.121 4.121 5 C -0.165 4.165 6 C -0.086 4.086 7 C -0.091 4.091 8 C -0.150 4.150 9 C -0.105 4.105 10 C 0.296 3.704 11 O -0.423 6.423 12 N -0.334 5.334 13 C -0.035 4.035 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.544 5.544 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.003 3.997 25 C -0.036 4.036 26 C -0.069 4.069 27 N -0.197 5.197 28 H 0.248 0.752 29 C -0.004 4.004 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.769 -24.036 0.282 24.196 hybrid contribution -0.264 0.703 0.555 0.934 sum 2.505 -23.332 0.836 23.481 Atomic orbital electron populations 1.21767 0.94894 1.01359 1.02509 1.20416 0.96030 0.92858 1.02339 1.18785 1.04906 0.96039 0.90407 1.20643 1.00080 0.95153 0.96180 1.20579 1.03250 0.94841 0.97875 1.20296 0.98297 0.99265 0.90713 1.18976 1.03871 0.93119 0.93168 1.19609 1.09396 0.94745 0.91253 1.19965 0.97345 0.90620 1.02564 1.20554 0.89778 0.82295 0.77804 1.90659 1.28230 1.76876 1.46571 1.48086 1.12803 1.09541 1.62941 1.22451 0.88638 0.91292 1.01138 1.21179 0.89313 0.92761 0.93484 1.44019 1.04965 1.07360 1.75081 1.19220 1.21238 0.82753 1.15334 0.91453 1.25093 1.01328 0.97766 0.95419 1.70032 1.34590 1.33375 1.16414 0.86218 0.77610 0.83830 0.79055 1.20212 1.21703 1.21488 1.21364 0.91792 0.89931 0.96636 1.22438 0.84215 0.98182 0.98762 1.21475 1.02163 0.87139 0.96143 1.41586 1.58923 1.14650 1.04525 0.75160 1.17969 1.02830 0.94971 0.84644 0.92583 0.92880 0.92210 0.90868 0.92070 0.86150 0.86157 0.86255 0.88407 0.88646 0.92440 0.90306 0.88388 0.95945 0.93514 0.95864 0.91556 0.91712 0.90897 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.65 6.07 -27.88 -0.17 -0.82 16 3 C -0.10 -1.11 5.15 -104.47 -0.54 -1.65 16 4 C -0.10 -1.14 9.65 -39.54 -0.38 -1.52 16 5 C -0.15 -1.81 9.97 -39.95 -0.40 -2.21 16 6 C -0.07 -0.96 10.05 -39.65 -0.40 -1.36 16 7 C -0.09 -1.27 6.35 -105.14 -0.67 -1.94 16 8 C -0.14 -1.96 4.81 -102.71 -0.49 -2.45 16 9 C -0.06 -0.85 4.57 -29.04 -0.13 -0.98 16 10 C 0.51 8.95 7.69 -10.99 -0.08 8.87 16 11 O -0.55 -11.63 15.44 5.56 0.09 -11.54 16 12 N -0.60 -10.91 2.95 -172.24 -0.51 -11.42 16 13 C 0.09 1.82 6.59 -3.60 -0.02 1.79 16 14 C 0.16 3.84 5.51 -3.60 -0.02 3.82 16 15 N -0.59 -14.42 2.96 -171.79 -0.51 -14.93 16 16 C -0.26 -6.80 9.57 -15.06 -0.14 -6.95 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.08 4.91 -17.44 -0.09 -0.01 16 19 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 20 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.13 2.55 6.70 -3.38 -0.02 2.52 16 25 C 0.09 1.41 6.52 -3.38 -0.02 1.39 16 26 C 0.06 0.64 11.73 -16.73 -0.20 0.44 16 27 N -0.59 -6.22 6.07 -10.65 -0.06 -6.29 16 28 H 0.41 3.00 8.96 -40.82 -0.37 2.64 16 29 C 0.10 1.32 6.97 -83.99 -0.59 0.73 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 34 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.10 1.19 7.73 -51.93 -0.40 0.79 16 39 H 0.10 0.97 7.91 -51.93 -0.41 0.56 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.66 6.99 -51.92 -0.36 1.29 16 42 H 0.10 2.61 6.00 -51.93 -0.31 2.30 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.07 0.89 5.91 -51.93 -0.31 0.58 16 49 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -33.86 395.27 -11.05 -44.91 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.61 Total: 3.46 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -4.00 Total: -1.13 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.46 Total: -57.90 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.86 -11.05 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099934.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.480 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds