Wall clock time and date at job start Wed Apr 1 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47077 * 2 1 4 4 C 1.37790 * 120.11471 * 264.99676 * 3 2 1 5 5 C 1.38782 * 120.67257 * 179.97438 * 4 3 2 6 6 C 1.36665 * 120.52508 * 0.02653 * 5 4 3 7 7 C 1.39592 * 119.76338 * 359.97438 * 6 5 4 8 8 C 1.46496 * 134.03105 * 179.97438 * 7 6 5 9 9 C 1.50697 * 126.50348 * 0.02562 * 8 7 6 10 10 C 1.50697 * 109.47056 * 85.00096 * 9 8 7 11 11 O 1.21281 * 120.00229 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00339 * 179.97438 * 10 9 8 13 13 C 1.46959 * 120.59932 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63871 * 235.20765 * 13 12 10 15 15 N 1.46965 * 108.63565 * 310.57503 * 14 13 12 16 16 C 1.36933 * 120.59269 * 235.20157 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84734 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57485 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46963 * 118.81113 * 55.47589 * 15 14 13 25 25 C 1.46965 * 120.59194 * 359.97438 * 12 10 9 26 26 C 1.34235 * 106.99373 * 180.28342 * 8 7 6 27 27 N 1.36835 * 109.93997 * 359.57095 * 26 8 7 28 28 H 0.96998 * 125.06171 * 180.18722 * 27 26 8 29 29 C 1.37689 * 109.87239 * 0.44563 * 27 26 8 30 30 H 1.08994 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47368 * 300.00313 * 1 2 3 32 32 H 1.09008 * 109.46883 * 59.99966 * 1 2 3 33 33 H 1.08994 * 109.47368 * 239.99687 * 2 1 3 34 34 H 1.08997 * 109.47030 * 119.99321 * 2 1 3 35 35 H 1.07998 * 119.66148 * 359.95655 * 4 3 2 36 36 H 1.07997 * 119.73844 * 180.02562 * 5 4 3 37 37 H 1.08002 * 120.11829 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47090 * 325.00492 * 9 8 7 39 39 H 1.09003 * 109.47391 * 205.00264 * 9 8 7 40 40 H 1.09005 * 109.61247 * 115.45920 * 13 12 10 41 41 H 1.09011 * 109.60878 * 354.95512 * 13 12 10 42 42 H 1.08999 * 109.61043 * 190.82664 * 14 13 12 43 43 H 1.09006 * 109.61118 * 70.32327 * 14 13 12 44 44 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.61152 * 64.26553 * 24 15 14 46 46 H 1.08995 * 109.61009 * 184.78048 * 24 15 14 47 47 H 1.08993 * 109.61066 * 244.54092 * 25 12 10 48 48 H 1.09000 * 109.60917 * 4.87853 * 25 12 10 49 49 H 1.08004 * 125.02871 * 179.73667 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0380 -1.1874 5 6 2.8240 3.3462 -1.2009 6 6 2.9629 4.0454 -0.0349 7 6 2.6360 3.4397 1.1795 8 6 2.6624 3.8799 2.5765 9 6 3.0938 5.2323 3.0823 10 6 1.9316 6.1890 3.0118 11 8 0.8585 5.8098 2.5927 12 7 2.0842 7.4658 3.4156 13 6 0.9599 8.4100 3.3520 14 6 1.3928 9.6334 2.5348 15 7 2.6866 10.1063 3.0469 16 6 2.8418 11.4036 3.4571 17 1 3.5713 11.6465 4.2155 18 6 2.0654 12.4070 2.8941 19 7 1.4367 12.1934 1.7577 20 14 1.9129 14.0608 3.7494 21 1 2.7112 14.0460 5.0015 22 1 2.4195 15.1305 2.8524 23 1 0.4872 14.3207 4.0737 24 6 3.8126 9.1637 3.1053 25 6 3.3781 7.9388 3.9273 26 6 2.2350 2.8480 3.3211 27 7 1.9279 1.7861 2.5146 28 1 1.5960 0.9289 2.8242 29 6 2.1655 2.1139 1.1986 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.2570 1.4981 -2.1169 36 1 3.0766 3.8153 -2.1402 37 1 3.3244 5.0630 -0.0530 38 1 3.9107 5.6071 2.4658 39 1 3.4293 5.1438 4.1156 40 1 0.6863 8.7215 4.3602 41 1 0.1070 7.9314 2.8704 42 1 0.6484 10.4232 2.6363 43 1 1.4940 9.3555 1.4857 44 1 0.8944 12.8948 1.3641 45 1 4.0822 8.8529 2.0958 46 1 4.6666 9.6431 3.5835 47 1 3.2772 8.2167 4.9764 48 1 4.1218 7.1480 3.8284 49 1 2.1441 2.8557 4.3973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073099934.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:42 Heat of formation + Delta-G solvation = 24.289808 kcal Electronic energy + Delta-G solvation = -29542.646606 eV Core-core repulsion = 25662.620641 eV Total energy + Delta-G solvation = -3880.025965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.27591 -40.83234 -38.43387 -38.02648 -35.58065 -35.32127 -33.48289 -32.98801 -31.87284 -30.28483 -29.86253 -28.89055 -27.76271 -25.38205 -24.82231 -24.35256 -22.77109 -22.54171 -22.27499 -20.56956 -19.45145 -18.70470 -18.63956 -17.73508 -17.22306 -16.71639 -16.66145 -16.44162 -16.04102 -15.53574 -15.46759 -15.44116 -15.27915 -14.97194 -14.84839 -14.52353 -14.36677 -14.16698 -13.68885 -13.55470 -13.50821 -13.31153 -13.04531 -12.96182 -12.76052 -12.64478 -12.44578 -12.33937 -12.25382 -12.22674 -12.00038 -11.84408 -11.81583 -11.63538 -11.49821 -10.79673 -10.61446 -10.25001 -9.74438 -9.07751 -8.64655 -8.45390 -7.87485 -5.36704 0.22591 0.74654 1.47360 1.49663 1.59990 1.65472 1.78662 2.25802 2.32726 2.52295 2.98305 3.27198 3.62274 3.75332 3.84273 3.87554 4.00672 4.11263 4.23002 4.28595 4.31940 4.36212 4.40166 4.45152 4.47855 4.57050 4.58587 4.65851 4.69817 4.71744 4.82383 4.86131 4.88769 4.96610 5.01953 5.02714 5.08663 5.17300 5.26823 5.28029 5.36416 5.48136 5.62542 5.67096 5.71828 5.72523 5.80674 5.87501 6.28933 6.36023 6.63845 6.77228 7.09823 7.33660 7.80069 8.33763 9.17719 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.002341 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.677895 B =11960.329629 C =12304.168552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.097 4.097 4 C -0.113 4.113 5 C -0.151 4.151 6 C -0.102 4.102 7 C -0.117 4.117 8 C -0.183 4.183 9 C -0.052 4.052 10 C 0.506 3.494 11 O -0.588 6.588 12 N -0.606 5.606 13 C 0.104 3.896 14 C 0.172 3.828 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.078 0.922 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.261 1.261 22 H -0.295 1.295 23 H -0.293 1.293 24 C 0.123 3.877 25 C 0.099 3.901 26 C 0.074 3.926 27 N -0.583 5.583 28 H 0.428 0.572 29 C 0.085 3.915 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.067 0.933 43 H -0.013 1.013 44 H 0.249 0.751 45 H 0.013 0.987 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.121 0.879 49 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -26.500 2.595 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.100 4.100 4 C -0.132 4.132 5 C -0.170 4.170 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.191 4.191 9 C -0.092 4.092 10 C 0.296 3.704 11 O -0.468 6.468 12 N -0.338 5.338 13 C -0.021 4.021 14 C 0.045 3.955 15 N -0.333 5.333 16 C -0.388 4.388 17 H 0.095 0.905 18 C -0.250 4.250 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.222 1.222 23 H -0.220 1.220 24 C -0.003 4.003 25 C -0.024 4.024 26 C -0.053 4.053 27 N -0.186 5.186 28 H 0.267 0.733 29 C -0.023 4.023 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.139 0.861 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.080 -26.700 2.392 27.115 hybrid contribution -0.641 1.427 -0.152 1.572 sum 3.439 -25.272 2.240 25.603 Atomic orbital electron populations 1.21745 0.94732 1.02379 1.01434 1.20480 0.95976 0.90983 1.03872 1.19209 1.03456 0.97449 0.89859 1.20982 0.99882 0.94840 0.97472 1.20843 1.02753 0.95565 0.97863 1.20388 1.00539 0.99259 0.91868 1.19356 1.04528 0.94418 0.93845 1.19804 1.12206 0.95798 0.91272 1.19960 0.95064 0.89096 1.05052 1.21451 0.90559 0.82279 0.76082 1.90635 1.30440 1.77606 1.48156 1.48186 1.12842 1.09548 1.63262 1.22003 0.89391 0.90260 1.00401 1.20842 0.89137 0.93292 0.92255 1.44280 1.06237 1.07727 1.75010 1.19617 1.20628 0.83703 1.14899 0.90469 1.25893 1.01701 1.01323 0.96061 1.70200 1.35902 1.34256 1.18160 0.85178 0.77209 0.79499 0.78361 1.18470 1.22225 1.21980 1.21609 0.90931 0.90696 0.97086 1.22474 0.83979 0.97734 0.98225 1.22034 0.99389 0.86301 0.97584 1.41611 1.58017 1.15306 1.03698 0.73275 1.18204 1.03344 0.94740 0.85969 0.90502 0.94120 0.93147 0.89247 0.90649 0.83621 0.84935 0.87562 0.87597 0.84694 0.91721 0.91446 0.91496 0.99514 0.94150 0.96881 0.90027 0.90438 0.86150 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.89 71.98 0.71 -1.31 16 2 C -0.08 -1.05 6.07 29.85 0.18 -0.87 16 3 C -0.10 -2.06 5.15 -19.77 -0.10 -2.16 16 4 C -0.11 -2.44 9.65 22.29 0.22 -2.22 16 5 C -0.15 -3.81 9.97 22.03 0.22 -3.59 16 6 C -0.10 -3.03 10.05 22.23 0.22 -2.81 16 7 C -0.12 -3.43 6.35 -20.20 -0.13 -3.56 16 8 C -0.18 -4.76 4.81 -18.63 -0.09 -4.84 16 9 C -0.05 -1.24 4.57 29.10 0.13 -1.10 16 10 C 0.51 17.37 7.69 87.66 0.67 18.04 16 11 O -0.59 -25.35 15.44 -3.03 -0.05 -25.40 16 12 N -0.61 -21.41 2.95 -817.23 -2.41 -23.82 16 13 C 0.10 4.37 6.59 86.41 0.57 4.94 16 14 C 0.17 8.67 5.51 86.41 0.48 9.14 16 15 N -0.61 -30.02 2.96 -697.42 -2.06 -32.09 16 16 C -0.26 -13.77 9.57 84.03 0.80 -12.96 16 17 H 0.08 3.90 7.89 -2.91 -0.02 3.87 16 18 C -0.05 -3.03 4.91 84.86 0.42 -2.61 16 19 N -0.94 -56.24 11.20 21.65 0.24 -55.99 16 20 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 C 0.12 4.67 6.70 86.55 0.58 5.25 16 25 C 0.10 2.88 6.52 86.55 0.56 3.44 16 26 C 0.07 1.46 11.73 83.00 0.97 2.43 16 27 N -0.58 -10.87 6.07 -187.61 -1.14 -12.01 16 28 H 0.43 5.00 8.96 -92.71 -0.83 4.17 16 29 C 0.08 2.08 6.97 39.03 0.27 2.35 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.09 0.97 8.05 -2.39 -0.02 0.95 16 34 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.11 2.36 7.73 -2.39 -0.02 2.34 16 39 H 0.14 2.11 7.91 -2.39 -0.02 2.09 16 40 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.07 2.96 6.99 -2.38 -0.02 2.94 16 42 H 0.07 3.78 6.00 -2.39 -0.01 3.76 16 43 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 47 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 48 H 0.12 2.39 5.91 -2.39 -0.01 2.37 16 49 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -77.87 395.27 3.44 -74.44 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.13 Total: 20.94 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.70 Total: 7.56 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.37 Total: -123.91 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -77.87 3.44 -74.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099934.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.726 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds