Wall clock time and date at job start Wed Apr 1 2020 00:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 110.27218 * 2 1 4 4 C 1.54597 * 110.39152 * 237.86089 * 2 1 3 5 5 C 1.54935 * 102.92055 * 219.08141 * 4 2 1 6 6 N 1.48539 * 103.22758 * 37.41002 * 5 4 2 7 7 C 1.46899 * 110.99850 * 200.28179 * 6 5 4 8 8 C 1.50707 * 109.47212 * 290.35119 * 7 6 5 9 9 C 1.35076 * 126.07645 * 105.47335 * 8 7 6 10 10 N 1.35044 * 107.97986 * 180.02562 * 9 8 7 11 11 C 1.46501 * 125.92778 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46772 * 124.99930 * 11 10 9 13 13 H 1.08002 * 120.00354 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99601 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99822 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99839 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47032 * 90.00574 * 16 14 12 18 18 H 1.48511 * 109.46968 * 210.00016 * 16 14 12 19 19 H 1.48491 * 109.47736 * 330.00179 * 16 14 12 20 20 N 1.40066 * 108.13927 * 0.02562 * 10 9 8 21 21 C 1.31626 * 108.10594 * 359.97438 * 20 10 9 22 22 C 1.48422 * 126.03544 * 179.97438 * 21 20 10 23 23 C 1.39324 * 120.11851 * 136.47634 * 22 21 20 24 24 C 1.38021 * 119.87644 * 179.74444 * 23 22 21 25 25 C 1.38319 * 120.12076 * 0.52727 * 24 23 22 26 26 C 1.38322 * 120.24310 * 359.72326 * 25 24 23 27 27 C 1.38018 * 120.11460 * 0.02562 * 26 25 24 28 28 C 1.47899 * 105.81746 * 320.79536 * 6 5 4 29 29 H 1.09008 * 109.47200 * 297.90852 * 1 2 3 30 30 H 1.09003 * 109.47424 * 57.91004 * 1 2 3 31 31 H 1.08999 * 109.47364 * 177.91031 * 1 2 3 32 32 H 0.96706 * 114.00591 * 302.09225 * 3 2 1 33 33 H 1.09000 * 110.71901 * 337.43596 * 4 2 1 34 34 H 1.08998 * 110.72676 * 100.54153 * 4 2 1 35 35 H 1.09001 * 110.66604 * 278.97734 * 5 4 2 36 36 H 1.09000 * 110.67213 * 155.84448 * 5 4 2 37 37 H 1.09006 * 109.47056 * 170.35433 * 7 6 5 38 38 H 1.08996 * 109.47449 * 50.34720 * 7 6 5 39 39 H 1.08002 * 126.00938 * 0.26719 * 9 8 7 40 40 H 1.09006 * 109.46672 * 244.99529 * 11 10 9 41 41 H 1.09002 * 109.47332 * 4.99839 * 11 10 9 42 42 H 0.97001 * 119.99875 * 179.97438 * 15 14 12 43 43 H 1.08000 * 120.05774 * 359.97211 * 23 22 21 44 44 H 1.08004 * 119.94111 * 180.25185 * 24 23 22 45 45 H 1.07999 * 119.87903 * 179.74795 * 25 24 23 46 46 H 1.07998 * 119.93940 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.05734 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.91553 * 144.68392 * 28 6 5 49 49 H 1.09003 * 109.91664 * 265.77659 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0251 1.3405 0.0000 4 6 2.0686 -0.7709 -1.2270 5 6 3.2881 -1.5325 -0.6497 6 7 2.8333 -1.9215 0.7098 7 6 3.9769 -2.2223 1.5814 8 6 4.6321 -3.5012 1.1272 9 6 5.8044 -3.6024 0.4639 10 7 6.0446 -4.9122 0.2393 11 6 7.2117 -5.4660 -0.4516 12 6 7.8875 -6.4786 0.4366 13 1 7.4879 -6.6883 1.4178 14 6 9.0161 -7.1373 -0.0034 15 7 9.6056 -8.0214 0.7715 16 14 9.7068 -6.7750 -1.7008 17 1 10.6918 -5.6675 -1.6083 18 1 10.3760 -7.9895 -2.2324 19 1 8.6020 -6.3801 -2.6109 20 7 4.9842 -5.6492 0.7816 21 6 4.1303 -4.8033 1.3181 22 6 2.8622 -5.1588 2.0025 23 6 2.5113 -4.5300 3.1952 24 6 1.3283 -4.8606 3.8247 25 6 0.4970 -5.8222 3.2792 26 6 0.8429 -6.4534 2.0980 27 6 2.0211 -6.1267 1.4576 28 6 2.0645 -0.7672 1.2234 29 1 -0.3634 0.4810 0.9082 30 1 -0.3634 0.5460 -0.8707 31 1 -0.3634 -1.0270 -0.0375 32 1 1.7211 1.8722 -0.7484 33 1 1.3205 -1.4689 -1.6028 34 1 2.3779 -0.0800 -2.0113 35 1 4.1580 -0.8782 -0.5918 36 1 3.5090 -2.4158 -1.2489 37 1 3.6306 -2.3364 2.6087 38 1 4.6979 -1.4065 1.5294 39 1 6.4400 -2.7806 0.1689 40 1 6.8919 -5.9487 -1.3751 41 1 7.9110 -4.6629 -0.6846 42 1 10.3993 -8.4850 0.4618 43 1 3.1621 -3.7825 3.6245 44 1 1.0534 -4.3709 4.7472 45 1 -0.4258 -6.0808 3.7772 46 1 0.1904 -7.2037 1.6767 47 1 2.2905 -6.6204 0.5355 48 1 1.2327 -1.1174 1.8346 49 1 2.7140 -0.1222 1.8152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180185488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:26 Heat of formation + Delta-G solvation = 60.375839 kcal Electronic energy + Delta-G solvation = -29766.126494 eV Core-core repulsion = 25887.665337 eV Total energy + Delta-G solvation = -3878.461157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.73041 -39.57743 -38.55149 -36.23093 -33.92587 -32.56499 -32.10548 -30.72322 -30.46694 -29.98124 -29.45284 -27.69224 -26.08620 -24.33547 -23.50279 -22.25469 -21.79810 -21.19724 -20.40214 -19.93888 -19.13795 -17.09653 -16.95625 -16.47043 -15.98892 -15.80314 -15.65476 -14.93743 -14.82026 -14.37377 -14.26068 -14.08577 -13.73974 -13.54354 -13.48466 -13.23380 -13.12669 -12.88666 -12.63744 -12.48148 -12.47323 -12.20489 -12.04365 -11.91455 -11.54160 -11.51214 -11.36615 -11.06987 -10.94259 -10.83612 -10.79822 -10.58997 -10.27813 -10.14048 -9.92838 -9.66845 -9.00489 -8.78700 -8.67553 -8.36466 -8.17848 -7.60295 -6.25564 -4.28314 1.46309 1.67502 2.62385 3.12030 3.18210 3.19792 3.21616 3.39759 3.84872 4.15093 4.20341 4.23061 4.43082 4.55850 4.65688 4.91652 5.03790 5.11558 5.14538 5.15995 5.19176 5.24414 5.28457 5.33132 5.46004 5.48947 5.58914 5.62952 5.68432 5.70815 5.78056 5.80102 5.87796 5.89514 5.93777 5.99577 6.07918 6.19523 6.27346 6.43314 6.46864 6.59578 6.65553 6.72321 6.91288 6.94542 7.09867 7.15638 7.23871 7.35117 7.40999 7.73112 8.29678 8.47649 8.84416 9.28888 10.87119 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.003453 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.123632 B = 8105.851441 C =10225.418855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 O -0.560 6.560 4 C -0.148 4.148 5 C 0.044 3.956 6 N -0.502 5.502 7 C 0.131 3.869 8 C -0.236 4.236 9 C 0.052 3.948 10 N -0.321 5.321 11 C 0.231 3.769 12 C -0.535 4.535 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.886 5.886 16 Si 0.872 3.128 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.264 1.264 20 N -0.258 5.258 21 C 0.095 3.905 22 C 0.024 3.976 23 C -0.097 4.097 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.095 4.095 28 C 0.048 3.952 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.375 0.625 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.163 0.837 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.269 0.731 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.122 0.878 48 H 0.087 0.913 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.022 16.019 -1.036 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.076 3.924 3 O -0.366 6.366 4 C -0.187 4.187 5 C -0.084 4.084 6 N -0.226 5.226 7 C 0.003 3.997 8 C -0.249 4.249 9 C -0.097 4.097 10 N -0.101 5.101 11 C 0.112 3.888 12 C -0.574 4.574 13 H 0.104 0.896 14 C -0.127 4.127 15 N -0.523 5.523 16 Si 0.698 3.302 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 N -0.081 5.081 21 C -0.069 4.069 22 C 0.023 3.977 23 C -0.116 4.116 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.114 4.114 28 C -0.080 4.080 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.180 0.820 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.140 0.860 48 H 0.106 0.894 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.417 13.890 -0.823 23.082 hybrid contribution 0.803 1.793 -1.268 2.338 sum -17.614 15.683 -2.092 23.676 Atomic orbital electron populations 1.22416 0.94938 1.03164 1.02177 1.22058 0.92776 0.82124 0.95436 1.86573 1.75110 1.23368 1.51570 1.23205 0.98786 0.99540 0.97138 1.23105 0.95667 0.98692 0.90920 1.64910 1.21491 1.34084 1.02120 1.20432 0.90193 0.92852 0.96207 1.19490 0.97944 0.94151 1.13284 1.22183 0.97926 0.88418 1.01201 1.48902 1.17269 1.03119 1.40781 1.20050 0.79991 0.95713 0.93075 1.21091 1.10886 1.21697 1.03681 0.89581 1.24827 0.96101 0.94464 0.97279 1.69871 1.20258 1.25474 1.36687 0.86919 0.79915 0.78701 0.84632 1.19731 1.20458 1.18916 1.77733 0.96699 1.19013 1.14646 1.20429 0.94685 0.91141 1.00640 1.17725 0.90898 0.95591 0.93529 1.21067 0.96603 0.99494 0.94451 1.20948 0.94751 0.98481 0.99900 1.21070 0.99653 0.97405 0.96391 1.21002 0.96905 1.00162 0.95939 1.21204 0.93782 0.96449 1.00013 1.22816 0.98876 0.90922 0.95396 0.91870 0.92500 0.90886 0.77808 0.90082 0.90886 0.93736 0.89982 0.90312 0.94420 0.82020 0.93975 0.93595 0.92134 0.86159 0.86379 0.86635 0.86365 0.86020 0.89433 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.56 37.16 0.32 -0.95 16 2 C 0.12 1.08 1.38 -89.27 -0.12 0.96 16 3 O -0.56 -5.24 12.95 -35.23 -0.46 -5.69 16 4 C -0.15 -1.41 6.35 -24.87 -0.16 -1.57 16 5 C 0.04 0.53 6.04 -1.90 -0.01 0.52 16 6 N -0.50 -6.33 5.26 -231.89 -1.22 -7.55 16 7 C 0.13 1.79 4.69 -4.97 -0.02 1.76 16 8 C -0.24 -4.01 5.07 -104.76 -0.53 -4.54 16 9 C 0.05 0.94 11.32 -17.26 -0.20 0.75 16 10 N -0.32 -7.07 3.67 -62.58 -0.23 -7.30 16 11 C 0.23 5.41 5.33 -5.19 -0.03 5.38 16 12 C -0.54 -15.09 9.79 -34.44 -0.34 -15.42 16 13 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 16 Si 0.87 20.08 27.47 -169.99 -4.67 15.41 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 20 N -0.26 -5.88 12.44 33.43 0.42 -5.47 16 21 C 0.09 1.83 6.66 -82.77 -0.55 1.28 16 22 C 0.02 0.41 5.73 -104.89 -0.60 -0.19 16 23 C -0.10 -1.38 8.89 -39.26 -0.35 -1.73 16 24 C -0.12 -1.49 10.03 -39.63 -0.40 -1.89 16 25 C -0.13 -1.49 10.04 -39.52 -0.40 -1.89 16 26 C -0.12 -1.59 10.03 -39.63 -0.40 -1.98 16 27 C -0.10 -1.50 9.78 -39.26 -0.38 -1.88 16 28 C 0.05 0.52 6.16 -2.76 -0.02 0.50 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.37 2.01 9.08 45.56 0.41 2.42 16 33 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 34 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.04 0.54 7.86 -51.93 -0.41 0.13 16 36 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 37 H 0.08 1.02 5.78 -51.93 -0.30 0.72 16 38 H 0.04 0.49 7.89 -51.93 -0.41 0.08 16 39 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 40 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 41 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 43 H 0.12 1.61 6.29 -52.49 -0.33 1.28 16 44 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 47 H 0.12 1.98 8.06 -52.48 -0.42 1.55 16 48 H 0.09 0.90 7.68 -51.93 -0.40 0.50 16 49 H 0.05 0.63 7.60 -51.93 -0.39 0.24 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -32.81 399.77 -10.45 -43.26 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.81 Total: 5.98 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -4.28 Total: -18.84 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.26 Total: -46.15 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.46 Total: -5.69 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.81 -10.45 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180185488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.636 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds