Wall clock time and date at job start Wed Apr 1 2020 00:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 110.27218 * 2 1 4 4 C 1.54597 * 110.39152 * 237.86089 * 2 1 3 5 5 C 1.54935 * 102.92055 * 219.08141 * 4 2 1 6 6 N 1.48539 * 103.22758 * 37.41002 * 5 4 2 7 7 C 1.46899 * 110.99850 * 200.28179 * 6 5 4 8 8 C 1.50707 * 109.47212 * 290.35119 * 7 6 5 9 9 C 1.35076 * 126.07645 * 105.47335 * 8 7 6 10 10 N 1.35044 * 107.97986 * 180.02562 * 9 8 7 11 11 C 1.46501 * 125.92778 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46772 * 124.99930 * 11 10 9 13 13 H 1.08002 * 120.00354 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99601 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99822 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99839 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47032 * 90.00574 * 16 14 12 18 18 H 1.48511 * 109.46968 * 210.00016 * 16 14 12 19 19 H 1.48491 * 109.47736 * 330.00179 * 16 14 12 20 20 N 1.40066 * 108.13927 * 0.02562 * 10 9 8 21 21 C 1.31626 * 108.10594 * 359.97438 * 20 10 9 22 22 C 1.48422 * 126.03544 * 179.97438 * 21 20 10 23 23 C 1.39324 * 120.11851 * 136.47634 * 22 21 20 24 24 C 1.38021 * 119.87644 * 179.74444 * 23 22 21 25 25 C 1.38319 * 120.12076 * 0.52727 * 24 23 22 26 26 C 1.38322 * 120.24310 * 359.72326 * 25 24 23 27 27 C 1.38018 * 120.11460 * 0.02562 * 26 25 24 28 28 C 1.47899 * 105.81746 * 320.79536 * 6 5 4 29 29 H 1.09008 * 109.47200 * 297.90852 * 1 2 3 30 30 H 1.09003 * 109.47424 * 57.91004 * 1 2 3 31 31 H 1.08999 * 109.47364 * 177.91031 * 1 2 3 32 32 H 0.96706 * 114.00591 * 302.09225 * 3 2 1 33 33 H 1.09000 * 110.71901 * 337.43596 * 4 2 1 34 34 H 1.08998 * 110.72676 * 100.54153 * 4 2 1 35 35 H 1.09001 * 110.66604 * 278.97734 * 5 4 2 36 36 H 1.09000 * 110.67213 * 155.84448 * 5 4 2 37 37 H 1.09006 * 109.47056 * 170.35433 * 7 6 5 38 38 H 1.08996 * 109.47449 * 50.34720 * 7 6 5 39 39 H 1.08002 * 126.00938 * 0.26719 * 9 8 7 40 40 H 1.09006 * 109.46672 * 244.99529 * 11 10 9 41 41 H 1.09002 * 109.47332 * 4.99839 * 11 10 9 42 42 H 0.97001 * 119.99875 * 179.97438 * 15 14 12 43 43 H 1.08000 * 120.05774 * 359.97211 * 23 22 21 44 44 H 1.08004 * 119.94111 * 180.25185 * 24 23 22 45 45 H 1.07999 * 119.87903 * 179.74795 * 25 24 23 46 46 H 1.07998 * 119.93940 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.05734 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.91553 * 144.68392 * 28 6 5 49 49 H 1.09003 * 109.91664 * 265.77659 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0251 1.3405 0.0000 4 6 2.0686 -0.7709 -1.2270 5 6 3.2881 -1.5325 -0.6497 6 7 2.8333 -1.9215 0.7098 7 6 3.9769 -2.2223 1.5814 8 6 4.6321 -3.5012 1.1272 9 6 5.8044 -3.6024 0.4639 10 7 6.0446 -4.9122 0.2393 11 6 7.2117 -5.4660 -0.4516 12 6 7.8875 -6.4786 0.4366 13 1 7.4879 -6.6883 1.4178 14 6 9.0161 -7.1373 -0.0034 15 7 9.6056 -8.0214 0.7715 16 14 9.7068 -6.7750 -1.7008 17 1 10.6918 -5.6675 -1.6083 18 1 10.3760 -7.9895 -2.2324 19 1 8.6020 -6.3801 -2.6109 20 7 4.9842 -5.6492 0.7816 21 6 4.1303 -4.8033 1.3181 22 6 2.8622 -5.1588 2.0025 23 6 2.5113 -4.5300 3.1952 24 6 1.3283 -4.8606 3.8247 25 6 0.4970 -5.8222 3.2792 26 6 0.8429 -6.4534 2.0980 27 6 2.0211 -6.1267 1.4576 28 6 2.0645 -0.7672 1.2234 29 1 -0.3634 0.4810 0.9082 30 1 -0.3634 0.5460 -0.8707 31 1 -0.3634 -1.0270 -0.0375 32 1 1.7211 1.8722 -0.7484 33 1 1.3205 -1.4689 -1.6028 34 1 2.3779 -0.0800 -2.0113 35 1 4.1580 -0.8782 -0.5918 36 1 3.5090 -2.4158 -1.2489 37 1 3.6306 -2.3364 2.6087 38 1 4.6979 -1.4065 1.5294 39 1 6.4400 -2.7806 0.1689 40 1 6.8919 -5.9487 -1.3751 41 1 7.9110 -4.6629 -0.6846 42 1 10.3993 -8.4850 0.4618 43 1 3.1621 -3.7825 3.6245 44 1 1.0534 -4.3709 4.7472 45 1 -0.4258 -6.0808 3.7772 46 1 0.1904 -7.2037 1.6767 47 1 2.2905 -6.6204 0.5355 48 1 1.2327 -1.1174 1.8346 49 1 2.7140 -0.1222 1.8152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180185488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:25 Heat of formation + Delta-G solvation = 37.030514 kcal Electronic energy + Delta-G solvation = -29767.138823 eV Core-core repulsion = 25887.665337 eV Total energy + Delta-G solvation = -3879.473486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.15810 -40.42522 -39.65983 -37.09703 -35.69971 -34.18100 -33.22653 -31.90707 -31.76073 -30.98701 -30.49821 -29.26294 -27.14303 -25.44639 -25.00542 -23.36702 -23.12450 -22.27565 -21.36670 -21.16169 -20.50990 -19.12242 -18.06911 -17.46011 -17.26480 -16.72657 -16.59665 -16.41358 -16.07712 -15.76734 -15.42869 -15.30469 -14.85809 -14.66888 -14.56570 -14.35575 -14.23177 -14.15693 -14.07764 -13.77271 -13.49228 -13.38119 -13.24796 -12.95320 -12.64639 -12.59223 -12.40121 -12.35450 -12.19694 -12.12333 -11.97487 -11.88078 -11.76506 -11.48138 -11.32102 -10.91320 -10.83281 -10.45499 -9.74552 -9.56700 -9.33213 -8.99914 -8.41820 -6.52539 0.31696 0.60223 1.15988 1.31160 1.34476 1.44319 1.80254 1.92056 2.24440 2.89937 3.02227 3.08012 3.38241 3.61584 3.69584 3.77776 3.88292 3.97009 4.10222 4.19441 4.22396 4.27077 4.35097 4.35720 4.45059 4.48223 4.58616 4.66092 4.67340 4.72325 4.76780 4.79775 4.87064 4.94751 5.01281 5.04218 5.07883 5.12295 5.16536 5.20636 5.21298 5.27480 5.31766 5.52923 5.68009 5.77406 5.85211 5.94739 5.99241 6.12155 6.18541 6.37996 6.53200 6.91242 6.96414 7.10562 8.75554 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.003453 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.123632 B = 8105.851441 C =10225.418855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 O -0.574 6.574 4 C -0.142 4.142 5 C 0.041 3.959 6 N -0.511 5.511 7 C 0.138 3.862 8 C -0.229 4.229 9 C 0.049 3.951 10 N -0.349 5.349 11 C 0.240 3.760 12 C -0.548 4.548 13 H 0.024 0.976 14 C 0.015 3.985 15 N -0.941 5.941 16 Si 0.956 3.044 17 H -0.251 1.251 18 H -0.279 1.279 19 H -0.242 1.242 20 N -0.323 5.323 21 C 0.098 3.902 22 C -0.008 4.008 23 C -0.103 4.103 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.118 4.118 28 C 0.047 3.953 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.392 0.608 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.196 0.804 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.273 0.727 43 H 0.125 0.875 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.142 0.858 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.165 18.835 -1.724 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.081 3.919 3 O -0.383 6.383 4 C -0.180 4.180 5 C -0.086 4.086 6 N -0.235 5.235 7 C 0.010 3.990 8 C -0.241 4.241 9 C -0.099 4.099 10 N -0.129 5.129 11 C 0.120 3.880 12 C -0.586 4.586 13 H 0.042 0.958 14 C -0.184 4.184 15 N -0.580 5.580 16 Si 0.777 3.223 17 H -0.175 1.175 18 H -0.204 1.204 19 H -0.166 1.166 20 N -0.146 5.146 21 C -0.066 4.066 22 C -0.010 4.010 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.081 4.081 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.213 0.787 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.159 0.841 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.596 16.745 -1.510 26.587 hybrid contribution 1.303 0.910 -0.879 1.816 sum -19.293 17.655 -2.389 26.261 Atomic orbital electron populations 1.22353 0.93392 1.03181 1.03188 1.21956 0.93769 0.82017 0.94139 1.86531 1.75520 1.23396 1.52826 1.23183 0.97543 0.99562 0.97713 1.23080 0.96944 0.98012 0.90598 1.64833 1.21052 1.35413 1.02243 1.20399 0.90752 0.91233 0.96640 1.19887 0.97480 0.94809 1.11949 1.22815 0.98705 0.87731 1.00606 1.48730 1.17232 1.04341 1.42570 1.19806 0.80826 0.95414 0.91932 1.21208 1.11586 1.23587 1.02201 0.95774 1.25936 0.96131 0.93696 1.02644 1.70053 1.21189 1.27134 1.39612 0.85607 0.79717 0.79029 0.77963 1.17535 1.20388 1.16559 1.77645 0.98265 1.21270 1.17425 1.21025 0.94764 0.91737 0.99061 1.17892 0.90506 0.97483 0.95123 1.21202 0.97765 0.99532 0.93709 1.21358 0.93437 0.98045 1.00569 1.21525 1.00566 0.96012 0.95384 1.21290 0.95921 1.00489 0.96316 1.21207 0.95424 0.97006 1.00129 1.22866 0.98633 0.90365 0.96243 0.91564 0.90771 0.91391 0.75753 0.90130 0.89229 0.93816 0.92243 0.89600 0.93457 0.78721 0.94093 0.90535 0.91797 0.85693 0.82944 0.82898 0.84069 0.88152 0.88848 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.56 71.98 0.62 -1.38 16 2 C 0.12 1.97 1.38 -9.92 -0.01 1.96 16 3 O -0.57 -9.17 12.95 -148.98 -1.93 -11.10 16 4 C -0.14 -2.43 6.35 31.80 0.20 -2.23 16 5 C 0.04 0.96 6.04 86.65 0.52 1.49 16 6 N -0.51 -12.44 5.26 -887.57 -4.67 -17.11 16 7 C 0.14 3.67 4.69 85.56 0.40 4.07 16 8 C -0.23 -7.94 5.07 -19.95 -0.10 -8.05 16 9 C 0.05 1.80 11.32 83.47 0.94 2.74 16 10 N -0.35 -16.04 3.67 -351.90 -1.29 -17.33 16 11 C 0.24 11.52 5.33 85.63 0.46 11.98 16 12 C -0.55 -32.61 9.79 25.60 0.25 -32.36 16 13 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 14 C 0.01 0.86 5.47 84.66 0.46 1.32 16 15 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 16 Si 0.96 41.68 27.47 68.60 1.88 43.57 16 17 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 20 N -0.32 -15.83 12.44 -48.15 -0.60 -16.43 16 21 C 0.10 3.99 6.66 42.53 0.28 4.27 16 22 C -0.01 -0.28 5.73 -20.04 -0.11 -0.40 16 23 C -0.10 -2.87 8.89 22.48 0.20 -2.67 16 24 C -0.12 -2.50 10.03 22.24 0.22 -2.27 16 25 C -0.12 -2.39 10.04 22.31 0.22 -2.16 16 26 C -0.12 -3.03 10.03 22.24 0.22 -2.81 16 27 C -0.12 -3.88 9.78 22.48 0.22 -3.66 16 28 C 0.05 0.93 6.16 86.44 0.53 1.46 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.91 8.11 -2.39 -0.02 0.90 16 32 H 0.39 3.00 9.08 -74.05 -0.67 2.33 16 33 H 0.08 1.40 7.85 -2.39 -0.02 1.38 16 34 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 35 H 0.04 1.01 7.86 -2.39 -0.02 0.99 16 36 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 37 H 0.09 2.14 5.78 -2.38 -0.01 2.13 16 38 H 0.05 1.16 7.89 -2.39 -0.02 1.14 16 39 H 0.20 5.52 8.06 -2.91 -0.02 5.49 16 40 H 0.04 1.95 7.20 -2.38 -0.02 1.93 16 41 H 0.08 3.17 7.50 -2.39 -0.02 3.16 16 42 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 43 H 0.13 3.26 6.29 -2.91 -0.02 3.24 16 44 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 47 H 0.10 3.59 8.06 -2.91 -0.02 3.56 16 48 H 0.09 1.73 7.68 -2.39 -0.02 1.71 16 49 H 0.05 1.04 7.60 -2.39 -0.02 1.03 16 Total: -1.00 -78.32 399.77 -0.54 -78.87 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.22 Total: 27.09 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 5.53 Total: -28.68 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -6.26 Total: -109.75 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -1.93 Total: -11.10 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.57 kcal Total: -78.32 -0.54 -78.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180185488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.898 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds