Wall clock time and date at job start Wed Apr 1 2020 00:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 110.28585 * 2 1 4 4 C 1.54260 * 110.32271 * 122.12565 * 2 1 3 5 5 C 1.54380 * 105.05669 * 118.89781 * 4 2 1 6 6 N 1.48554 * 104.59546 * 23.85456 * 5 4 2 7 7 C 1.46908 * 111.00097 * 200.95769 * 6 5 4 8 8 C 1.50702 * 109.46965 * 284.44879 * 7 6 5 9 9 C 1.35085 * 126.07287 * 105.86598 * 8 7 6 10 10 N 1.35044 * 107.97530 * 179.97438 * 9 8 7 11 11 C 1.46495 * 125.92847 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47302 * 124.99699 * 11 10 9 13 13 H 1.07997 * 119.99711 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99879 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00436 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99701 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47292 * 59.99756 * 16 14 12 18 18 H 1.48494 * 109.47007 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46884 * 299.99963 * 16 14 12 20 20 N 1.40077 * 108.13932 * 359.97438 * 10 9 8 21 21 C 1.31621 * 108.10771 * 359.75947 * 20 10 9 22 22 C 1.48417 * 126.03827 * 180.21608 * 21 20 10 23 23 C 1.39328 * 120.11625 * 136.80317 * 22 21 20 24 24 C 1.38022 * 119.87519 * 179.72612 * 23 22 21 25 25 C 1.38315 * 120.12030 * 0.54852 * 24 23 22 26 26 C 1.38326 * 120.24098 * 359.72677 * 25 24 23 27 27 C 1.38019 * 120.11967 * 359.97438 * 26 25 24 28 28 C 1.48716 * 104.28915 * 320.56981 * 6 5 4 29 29 H 1.09003 * 109.46879 * 60.69992 * 1 2 3 30 30 H 1.08998 * 109.47252 * 300.70345 * 1 2 3 31 31 H 1.08999 * 109.47159 * 180.69591 * 1 2 3 32 32 H 0.96700 * 113.99840 * 59.30673 * 3 2 1 33 33 H 1.09001 * 110.32435 * 237.79224 * 4 2 1 34 34 H 1.08995 * 110.32074 * 359.90056 * 4 2 1 35 35 H 1.09001 * 110.41148 * 142.63518 * 5 4 2 36 36 H 1.09002 * 110.41009 * 265.07355 * 5 4 2 37 37 H 1.09007 * 109.46755 * 44.44623 * 7 6 5 38 38 H 1.09001 * 109.47193 * 164.44450 * 7 6 5 39 39 H 1.07999 * 126.01232 * 359.95456 * 9 8 7 40 40 H 1.09004 * 109.46928 * 244.99515 * 11 10 9 41 41 H 1.08999 * 109.47519 * 4.99919 * 11 10 9 42 42 H 0.96995 * 120.00339 * 180.02562 * 15 14 12 43 43 H 1.07998 * 120.06333 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.94042 * 180.27528 * 24 23 22 45 45 H 1.08003 * 119.88335 * 179.74573 * 25 24 23 46 46 H 1.07999 * 119.93995 * 179.97438 * 26 25 24 47 47 H 1.07995 * 120.06159 * 180.02562 * 27 26 25 48 48 H 1.08995 * 110.39246 * 280.64329 * 28 6 5 49 49 H 1.09005 * 110.51143 * 158.14805 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0254 1.3404 0.0000 4 6 2.0657 -0.7693 1.2251 5 6 2.8806 -1.9415 0.6376 6 7 3.2693 -1.4834 -0.7210 7 6 3.6068 -2.6231 -1.5844 8 6 4.9669 -3.1524 -1.2086 9 6 5.2169 -4.2949 -0.5327 10 7 6.5551 -4.4144 -0.3967 11 6 7.2564 -5.5115 0.2748 12 6 8.2616 -6.1180 -0.6701 13 1 8.3672 -5.7258 -1.6707 14 6 9.0464 -7.1737 -0.2569 15 7 8.9182 -7.6510 0.9618 16 14 10.2930 -7.9251 -1.4279 17 1 11.2735 -6.8884 -1.8391 18 1 11.0045 -9.0364 -0.7470 19 1 9.5921 -8.4473 -2.6284 20 7 7.1563 -3.3079 -1.0100 21 6 6.2035 -2.5471 -1.5057 22 6 6.3976 -1.2740 -2.2436 23 6 5.6553 -1.0121 -3.3932 24 6 5.8358 0.1758 -4.0723 25 6 6.7596 1.1005 -3.6200 26 6 7.5034 0.8430 -2.4824 27 6 7.3265 -0.3390 -1.7922 28 6 2.0662 -0.7699 -1.2260 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3634 0.5247 0.8836 31 1 -0.3633 -1.0276 0.0125 32 1 1.7388 1.8657 0.7597 33 1 2.7081 -0.1250 1.8254 34 1 1.2387 -1.1453 1.8273 35 1 3.7670 -2.1296 1.2435 36 1 2.2647 -2.8387 0.5746 37 1 2.8627 -3.4093 -1.4557 38 1 3.6176 -2.2998 -2.6253 39 1 4.4767 -4.9903 -0.1654 40 1 7.7711 -5.1283 1.1559 41 1 6.5365 -6.2722 0.5766 42 1 9.4706 -8.3934 1.2525 43 1 4.9372 -1.7355 -3.7500 44 1 5.2578 0.3818 -4.9610 45 1 6.9007 2.0270 -4.1567 46 1 8.2237 1.5683 -2.1338 47 1 7.9074 -0.5388 -0.9039 48 1 1.3229 -1.4833 -1.5817 49 1 2.3393 -0.0759 -2.0210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180185507.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:30 Heat of formation + Delta-G solvation = 55.448123 kcal Electronic energy + Delta-G solvation = -29753.054182 eV Core-core repulsion = 25874.379344 eV Total energy + Delta-G solvation = -3878.674839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.61386 -39.48934 -38.48175 -36.15251 -33.88297 -32.56373 -32.02937 -30.66880 -30.22619 -29.84576 -29.35889 -27.34965 -26.01181 -24.28938 -23.60428 -22.20580 -21.87865 -21.10552 -20.46287 -19.82997 -19.04014 -17.08382 -16.67418 -16.51361 -15.85250 -15.68682 -15.09451 -14.83522 -14.78753 -14.57141 -14.23926 -14.06814 -13.94932 -13.61628 -13.32236 -13.09393 -12.93747 -12.75506 -12.65947 -12.38092 -12.23138 -12.11588 -12.01604 -11.73867 -11.50011 -11.40104 -11.11703 -11.00820 -10.88476 -10.83569 -10.78234 -10.57011 -10.25320 -10.10529 -9.87323 -9.72397 -8.93226 -8.63283 -8.61569 -8.31498 -8.09814 -7.51584 -6.26274 -4.31427 1.52978 1.73464 2.73813 3.25348 3.28220 3.28495 3.33561 3.53744 3.98357 4.15101 4.26857 4.31082 4.43882 4.56163 4.79494 5.00542 5.06796 5.10173 5.13385 5.18489 5.21315 5.28076 5.31912 5.37442 5.46440 5.50968 5.61283 5.65915 5.69122 5.72054 5.79040 5.82604 5.85313 5.93864 6.00800 6.04765 6.20984 6.26888 6.38828 6.53039 6.67641 6.77991 6.81906 6.95541 6.99091 7.07626 7.15670 7.26746 7.38924 7.55517 7.68277 7.85063 7.98794 8.58053 8.77762 9.34541 10.82574 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.003249 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.677746 B = 8616.557348 C =10432.351133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.126 3.874 3 O -0.548 6.548 4 C -0.151 4.151 5 C 0.039 3.961 6 N -0.492 5.492 7 C 0.129 3.871 8 C -0.239 4.239 9 C 0.052 3.948 10 N -0.322 5.322 11 C 0.257 3.743 12 C -0.530 4.530 13 H 0.069 0.931 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.275 1.275 20 N -0.266 5.266 21 C 0.093 3.907 22 C 0.026 3.974 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.095 4.095 28 C 0.045 3.955 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.371 0.629 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.161 0.839 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.268 0.732 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.052 0.948 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.725 15.695 -2.915 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.085 3.915 3 O -0.353 6.353 4 C -0.189 4.189 5 C -0.089 4.089 6 N -0.216 5.216 7 C 0.001 3.999 8 C -0.251 4.251 9 C -0.098 4.098 10 N -0.101 5.101 11 C 0.140 3.860 12 C -0.568 4.568 13 H 0.087 0.913 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.735 3.265 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.089 5.089 21 C -0.070 4.070 22 C 0.024 3.976 23 C -0.118 4.118 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.115 4.115 28 C -0.083 4.083 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.218 0.782 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.178 0.822 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.140 0.860 48 H 0.070 0.930 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.528 15.335 -3.070 21.346 hybrid contribution -1.171 -1.001 0.078 1.543 sum -15.699 14.334 -2.992 21.468 Atomic orbital electron populations 1.22478 0.95484 1.02654 1.02528 1.21886 0.91563 0.82944 0.95134 1.86642 1.75948 1.23064 1.49692 1.23092 0.99777 0.98380 0.97699 1.23015 0.98805 0.95388 0.91680 1.65473 1.31345 1.23116 1.01674 1.20418 0.92317 0.90584 0.96612 1.19461 0.94285 0.98275 1.13114 1.22172 0.87452 0.98731 1.01465 1.49353 1.03625 1.17611 1.39546 1.19730 0.92907 0.80559 0.92800 1.21210 1.19926 1.15939 0.99709 0.91306 1.24933 0.97170 0.96300 0.95555 1.69902 1.40348 1.26095 1.17042 0.86387 0.81002 0.78626 0.80530 1.19829 1.21024 1.20014 1.77674 1.20827 0.96731 1.13712 1.20397 0.91046 0.95022 1.00572 1.17733 0.95643 0.90745 0.93486 1.21042 0.99147 0.96999 0.94584 1.20929 0.98978 0.94206 0.99928 1.21055 0.97172 0.99249 0.97065 1.20997 0.99918 0.97107 0.95913 1.21199 0.97200 0.93250 0.99816 1.23072 0.91928 0.96673 0.96624 0.91710 0.92211 0.91583 0.78178 0.90281 0.91111 0.89939 0.94034 0.94507 0.90474 0.82165 0.93675 0.92826 0.92252 0.86280 0.86469 0.86681 0.86409 0.86048 0.92986 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 8.56 37.16 0.32 -0.92 16 2 C 0.13 1.21 1.44 -89.24 -0.13 1.09 16 3 O -0.55 -5.85 12.96 -35.23 -0.46 -6.31 16 4 C -0.15 -1.49 6.45 -25.35 -0.16 -1.65 16 5 C 0.04 0.48 6.15 -2.19 -0.01 0.46 16 6 N -0.49 -6.56 5.32 -231.27 -1.23 -7.79 16 7 C 0.13 1.78 4.83 -4.97 -0.02 1.76 16 8 C -0.24 -4.19 5.29 -104.76 -0.55 -4.75 16 9 C 0.05 0.98 11.32 -17.26 -0.20 0.78 16 10 N -0.32 -7.33 3.67 -62.58 -0.23 -7.56 16 11 C 0.26 6.50 6.26 -5.20 -0.03 6.47 16 12 C -0.53 -14.76 9.23 -34.44 -0.32 -15.08 16 13 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -25.34 13.29 55.43 0.74 -24.61 16 16 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 N -0.27 -6.19 12.44 33.43 0.42 -5.77 16 21 C 0.09 1.85 6.66 -82.78 -0.55 1.30 16 22 C 0.03 0.45 5.74 -104.90 -0.60 -0.15 16 23 C -0.10 -1.47 8.89 -39.26 -0.35 -1.82 16 24 C -0.12 -1.58 10.03 -39.63 -0.40 -1.98 16 25 C -0.13 -1.61 10.04 -39.52 -0.40 -2.01 16 26 C -0.12 -1.69 10.03 -39.63 -0.40 -2.08 16 27 C -0.10 -1.59 9.78 -39.26 -0.38 -1.97 16 28 C 0.05 0.50 5.75 -2.10 -0.01 0.49 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.37 2.44 9.08 45.56 0.41 2.85 16 33 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 34 H 0.07 0.57 7.71 -51.93 -0.40 0.17 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.46 7.74 -51.93 -0.40 0.06 16 37 H 0.04 0.46 7.73 -51.92 -0.40 0.06 16 38 H 0.08 1.01 5.72 -51.93 -0.30 0.72 16 39 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.33 8.07 -51.93 -0.42 0.91 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.12 1.64 6.27 -52.49 -0.33 1.31 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 48 H 0.05 0.50 7.72 -51.93 -0.40 0.10 16 49 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -32.00 403.67 -10.84 -42.84 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.84 Total: 5.03 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -4.30 Total: -18.41 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.31 Total: -45.74 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.46 Total: -6.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.00 -10.84 -42.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180185507.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.292 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds