Wall clock time and date at job start Wed Apr 1 2020 00:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 110.28585 * 2 1 4 4 C 1.54260 * 110.32271 * 122.12565 * 2 1 3 5 5 C 1.54380 * 105.05669 * 118.89781 * 4 2 1 6 6 N 1.48554 * 104.59546 * 23.85456 * 5 4 2 7 7 C 1.46908 * 111.00097 * 200.95769 * 6 5 4 8 8 C 1.50702 * 109.46965 * 284.44879 * 7 6 5 9 9 C 1.35085 * 126.07287 * 105.86598 * 8 7 6 10 10 N 1.35044 * 107.97530 * 179.97438 * 9 8 7 11 11 C 1.46495 * 125.92847 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47302 * 124.99699 * 11 10 9 13 13 H 1.07997 * 119.99711 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99879 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00436 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99701 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47292 * 59.99756 * 16 14 12 18 18 H 1.48494 * 109.47007 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46884 * 299.99963 * 16 14 12 20 20 N 1.40077 * 108.13932 * 359.97438 * 10 9 8 21 21 C 1.31621 * 108.10771 * 359.75947 * 20 10 9 22 22 C 1.48417 * 126.03827 * 180.21608 * 21 20 10 23 23 C 1.39328 * 120.11625 * 136.80317 * 22 21 20 24 24 C 1.38022 * 119.87519 * 179.72612 * 23 22 21 25 25 C 1.38315 * 120.12030 * 0.54852 * 24 23 22 26 26 C 1.38326 * 120.24098 * 359.72677 * 25 24 23 27 27 C 1.38019 * 120.11967 * 359.97438 * 26 25 24 28 28 C 1.48716 * 104.28915 * 320.56981 * 6 5 4 29 29 H 1.09003 * 109.46879 * 60.69992 * 1 2 3 30 30 H 1.08998 * 109.47252 * 300.70345 * 1 2 3 31 31 H 1.08999 * 109.47159 * 180.69591 * 1 2 3 32 32 H 0.96700 * 113.99840 * 59.30673 * 3 2 1 33 33 H 1.09001 * 110.32435 * 237.79224 * 4 2 1 34 34 H 1.08995 * 110.32074 * 359.90056 * 4 2 1 35 35 H 1.09001 * 110.41148 * 142.63518 * 5 4 2 36 36 H 1.09002 * 110.41009 * 265.07355 * 5 4 2 37 37 H 1.09007 * 109.46755 * 44.44623 * 7 6 5 38 38 H 1.09001 * 109.47193 * 164.44450 * 7 6 5 39 39 H 1.07999 * 126.01232 * 359.95456 * 9 8 7 40 40 H 1.09004 * 109.46928 * 244.99515 * 11 10 9 41 41 H 1.08999 * 109.47519 * 4.99919 * 11 10 9 42 42 H 0.96995 * 120.00339 * 180.02562 * 15 14 12 43 43 H 1.07998 * 120.06333 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.94042 * 180.27528 * 24 23 22 45 45 H 1.08003 * 119.88335 * 179.74573 * 25 24 23 46 46 H 1.07999 * 119.93995 * 179.97438 * 26 25 24 47 47 H 1.07995 * 120.06159 * 180.02562 * 27 26 25 48 48 H 1.08995 * 110.39246 * 280.64329 * 28 6 5 49 49 H 1.09005 * 110.51143 * 158.14805 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0254 1.3404 0.0000 4 6 2.0657 -0.7693 1.2251 5 6 2.8806 -1.9415 0.6376 6 7 3.2693 -1.4834 -0.7210 7 6 3.6068 -2.6231 -1.5844 8 6 4.9669 -3.1524 -1.2086 9 6 5.2169 -4.2949 -0.5327 10 7 6.5551 -4.4144 -0.3967 11 6 7.2564 -5.5115 0.2748 12 6 8.2616 -6.1180 -0.6701 13 1 8.3672 -5.7258 -1.6707 14 6 9.0464 -7.1737 -0.2569 15 7 8.9182 -7.6510 0.9618 16 14 10.2930 -7.9251 -1.4279 17 1 11.2735 -6.8884 -1.8391 18 1 11.0045 -9.0364 -0.7470 19 1 9.5921 -8.4473 -2.6284 20 7 7.1563 -3.3079 -1.0100 21 6 6.2035 -2.5471 -1.5057 22 6 6.3976 -1.2740 -2.2436 23 6 5.6553 -1.0121 -3.3932 24 6 5.8358 0.1758 -4.0723 25 6 6.7596 1.1005 -3.6200 26 6 7.5034 0.8430 -2.4824 27 6 7.3265 -0.3390 -1.7922 28 6 2.0662 -0.7699 -1.2260 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3634 0.5247 0.8836 31 1 -0.3633 -1.0276 0.0125 32 1 1.7388 1.8657 0.7597 33 1 2.7081 -0.1250 1.8254 34 1 1.2387 -1.1453 1.8273 35 1 3.7670 -2.1296 1.2435 36 1 2.2647 -2.8387 0.5746 37 1 2.8627 -3.4093 -1.4557 38 1 3.6176 -2.2998 -2.6253 39 1 4.4767 -4.9903 -0.1654 40 1 7.7711 -5.1283 1.1559 41 1 6.5365 -6.2722 0.5766 42 1 9.4706 -8.3934 1.2525 43 1 4.9372 -1.7355 -3.7500 44 1 5.2578 0.3818 -4.9610 45 1 6.9007 2.0270 -4.1567 46 1 8.2237 1.5683 -2.1338 47 1 7.9074 -0.5388 -0.9039 48 1 1.3229 -1.4833 -1.5817 49 1 2.3393 -0.0759 -2.0210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180185507.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:29 Heat of formation + Delta-G solvation = 34.028053 kcal Electronic energy + Delta-G solvation = -29753.983026 eV Core-core repulsion = 25874.379344 eV Total energy + Delta-G solvation = -3879.603683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.10502 -40.36410 -39.65180 -37.06720 -35.75028 -34.09284 -33.20721 -31.76225 -31.65303 -30.95860 -30.39201 -28.95140 -27.14748 -25.56816 -25.08318 -23.41769 -23.21720 -22.17043 -21.37937 -21.18759 -20.43589 -18.67789 -17.96242 -17.81288 -17.29948 -16.68426 -16.47646 -16.08892 -15.95609 -15.65147 -15.52473 -15.44984 -15.08694 -14.64728 -14.44434 -14.25111 -14.12156 -14.01998 -14.00701 -13.54606 -13.50816 -13.32702 -13.20440 -13.00299 -12.75956 -12.69993 -12.47712 -12.33758 -12.28120 -12.01868 -11.95573 -11.86139 -11.70012 -11.46656 -11.31541 -10.84423 -10.77572 -10.42838 -9.74527 -9.53978 -9.28760 -8.99776 -8.37345 -6.51954 0.32463 0.60194 1.19994 1.34066 1.36795 1.45432 1.84282 1.95283 2.31523 2.93893 3.04443 3.20380 3.32607 3.67180 3.68981 3.74499 3.91597 4.06086 4.13184 4.19742 4.24489 4.29584 4.34053 4.37119 4.46153 4.56603 4.66166 4.69957 4.73902 4.78632 4.80900 4.84295 4.88647 4.90232 5.01418 5.09333 5.09801 5.13527 5.18087 5.22796 5.25864 5.32124 5.52314 5.53207 5.67642 5.73562 5.81080 5.89786 6.03124 6.14731 6.18618 6.29240 6.60346 6.98284 7.01784 7.18248 8.70101 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.003249 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.677746 B = 8616.557348 C =10432.351133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 O -0.571 6.571 4 C -0.145 4.145 5 C 0.037 3.963 6 N -0.514 5.514 7 C 0.135 3.865 8 C -0.228 4.228 9 C 0.046 3.954 10 N -0.350 5.350 11 C 0.274 3.726 12 C -0.549 4.549 13 H 0.049 0.951 14 C 0.020 3.980 15 N -0.920 5.920 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.270 1.270 19 H -0.267 1.267 20 N -0.324 5.324 21 C 0.095 3.905 22 C -0.006 4.006 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.121 4.121 28 C 0.044 3.956 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.388 0.612 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.190 0.810 40 H 0.015 0.985 41 H 0.055 0.945 42 H 0.273 0.727 43 H 0.128 0.872 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.140 0.860 47 H 0.098 0.902 48 H 0.072 0.928 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.022 17.161 -4.848 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.086 3.914 3 O -0.379 6.379 4 C -0.183 4.183 5 C -0.091 4.091 6 N -0.238 5.238 7 C 0.007 3.993 8 C -0.240 4.240 9 C -0.102 4.102 10 N -0.130 5.130 11 C 0.155 3.845 12 C -0.587 4.587 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.558 5.558 16 Si 0.794 3.206 17 H -0.202 1.202 18 H -0.195 1.195 19 H -0.192 1.192 20 N -0.148 5.148 21 C -0.068 4.068 22 C -0.008 4.008 23 C -0.121 4.121 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.083 4.083 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.207 0.793 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.146 0.854 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.116 0.884 48 H 0.090 0.910 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.857 16.821 -4.991 24.332 hybrid contribution -0.493 -1.275 0.648 1.513 sum -17.350 15.546 -4.343 23.698 Atomic orbital electron populations 1.22403 0.93098 1.03477 1.03369 1.21913 0.93164 0.82323 0.93974 1.86591 1.76648 1.23721 1.50930 1.23069 0.99954 0.97329 0.97977 1.22997 0.98080 0.97054 0.90993 1.65347 1.33292 1.23035 1.02089 1.20417 0.90322 0.91485 0.97121 1.19906 0.95551 0.97250 1.11339 1.22767 0.86414 0.99782 1.01209 1.49055 1.04835 1.17658 1.41410 1.19240 0.92518 0.81123 0.91598 1.21350 1.21350 1.16658 0.99370 0.93233 1.25732 0.98709 0.96467 0.97142 1.69979 1.41100 1.26457 1.18310 0.85427 0.78524 0.77920 0.78750 1.20168 1.19456 1.19206 1.77584 1.23038 0.97971 1.16165 1.21007 0.91403 0.95258 0.99175 1.17890 0.97630 0.90177 0.95095 1.21203 0.98878 0.98246 0.93798 1.21364 0.98696 0.92946 1.00402 1.21520 0.95691 1.00349 0.96085 1.21280 1.00438 0.96248 0.96123 1.21199 0.97743 0.94949 1.00115 1.23128 0.91391 0.96789 0.97015 0.91550 0.90738 0.90744 0.76316 0.91379 0.88785 0.93040 0.92670 0.92568 0.89573 0.79289 0.96661 0.92678 0.91749 0.85392 0.82877 0.82959 0.84200 0.88397 0.91014 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 8.56 71.98 0.62 -1.20 16 2 C 0.13 2.17 1.44 -9.90 -0.01 2.16 16 3 O -0.57 -11.20 12.96 -148.98 -1.93 -13.14 16 4 C -0.15 -2.63 6.45 31.49 0.20 -2.42 16 5 C 0.04 0.87 6.15 86.45 0.53 1.40 16 6 N -0.51 -13.21 5.32 -885.59 -4.71 -17.92 16 7 C 0.13 3.58 4.83 85.56 0.41 3.99 16 8 C -0.23 -8.17 5.29 -19.95 -0.11 -8.28 16 9 C 0.05 1.80 11.32 83.47 0.94 2.75 16 10 N -0.35 -16.94 3.67 -351.91 -1.29 -18.23 16 11 C 0.27 14.75 6.26 85.63 0.54 15.28 16 12 C -0.55 -32.08 9.23 25.60 0.24 -31.85 16 13 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 14 C 0.02 1.14 5.46 84.66 0.46 1.60 16 15 N -0.92 -53.24 13.29 21.45 0.28 -52.96 16 16 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 N -0.32 -16.18 12.44 -48.16 -0.60 -16.78 16 21 C 0.10 3.98 6.66 42.53 0.28 4.26 16 22 C -0.01 -0.22 5.74 -20.04 -0.11 -0.33 16 23 C -0.10 -2.93 8.89 22.48 0.20 -2.73 16 24 C -0.12 -2.64 10.03 22.24 0.22 -2.42 16 25 C -0.12 -2.62 10.04 22.31 0.22 -2.39 16 26 C -0.12 -3.28 10.03 22.24 0.22 -3.06 16 27 C -0.12 -4.18 9.78 22.48 0.22 -3.96 16 28 C 0.04 0.89 5.75 86.42 0.50 1.39 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.39 4.40 9.08 -74.06 -0.67 3.73 16 33 H 0.07 1.37 7.98 -2.39 -0.02 1.35 16 34 H 0.09 1.26 7.71 -2.39 -0.02 1.24 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.13 7.74 -2.39 -0.02 1.12 16 37 H 0.06 1.27 7.73 -2.38 -0.02 1.25 16 38 H 0.09 2.12 5.72 -2.39 -0.01 2.10 16 39 H 0.19 5.90 8.06 -2.91 -0.02 5.88 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 2.88 8.07 -2.39 -0.02 2.86 16 42 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.13 3.34 6.27 -2.91 -0.02 3.32 16 44 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 47 H 0.10 3.72 8.06 -2.91 -0.02 3.69 16 48 H 0.07 1.15 7.72 -2.39 -0.02 1.13 16 49 H 0.08 1.76 8.08 -2.38 -0.02 1.74 16 Total: -1.00 -73.66 403.67 -0.36 -74.02 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.28 Total: 23.99 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 5.58 Total: -25.83 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -6.31 Total: -105.88 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.93 Total: -13.14 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.66 -0.36 -74.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180185507.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.050 kcal (2) G-P(sol) polarization free energy of solvation -73.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds