Wall clock time and date at job start Wed Apr 1 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.46887 * 2 1 4 4 N 1.46501 * 109.46994 * 184.84194 * 3 2 1 5 5 C 1.38142 * 125.60735 * 91.46489 * 4 3 2 6 6 C 1.47064 * 125.42703 * 359.97092 * 5 4 3 7 7 O 1.21646 * 120.00272 * 27.20858 * 6 5 4 8 8 N 1.34785 * 119.99675 * 206.93093 * 6 5 4 9 9 C 1.46960 * 120.59476 * 2.74425 * 8 6 5 10 10 C 1.53811 * 108.39876 * 124.75412 * 9 8 6 11 11 N 1.46973 * 108.57795 * 49.63862 * 10 9 8 12 12 C 1.36936 * 120.59515 * 124.62284 * 11 10 9 13 13 H 1.08002 * 120.00089 * 330.89143 * 12 11 10 14 14 C 1.38807 * 119.99825 * 150.88705 * 12 11 10 15 15 N 1.31623 * 120.00015 * 164.77280 * 14 12 11 16 16 Si 1.86799 * 120.00412 * 344.77594 * 14 12 11 17 17 H 1.48498 * 109.46991 * 95.36881 * 16 14 12 18 18 H 1.48495 * 109.47221 * 215.37255 * 16 14 12 19 19 H 1.48499 * 109.46862 * 335.37168 * 16 14 12 20 20 C 1.46961 * 118.81011 * 304.64663 * 11 10 9 21 21 C 1.46965 * 120.59190 * 183.02026 * 8 6 5 22 22 C 1.35865 * 109.14169 * 180.24381 * 5 4 3 23 23 C 1.41590 * 107.72391 * 359.60947 * 22 5 4 24 24 C 1.40101 * 133.37696 * 180.10528 * 23 22 5 25 25 C 1.36440 * 119.83074 * 180.30130 * 24 23 22 26 26 C 1.38940 * 120.61099 * 0.02562 * 25 24 23 27 27 C 1.37668 * 120.65458 * 0.02562 * 26 25 24 28 28 C 1.37484 * 125.60381 * 271.46172 * 4 3 2 29 29 H 1.09004 * 109.46769 * 184.85170 * 1 2 3 30 30 H 1.09004 * 109.47398 * 304.84705 * 1 2 3 31 31 H 1.09001 * 109.47796 * 64.85311 * 1 2 3 32 32 H 1.09004 * 109.47424 * 240.00398 * 2 1 3 33 33 H 1.09000 * 109.47738 * 119.99519 * 2 1 3 34 34 H 1.09000 * 109.46827 * 64.84394 * 3 2 1 35 35 H 1.08999 * 109.47142 * 304.83989 * 3 2 1 36 36 H 1.08996 * 109.61164 * 244.53931 * 9 8 6 37 37 H 1.09005 * 109.60949 * 5.04892 * 9 8 6 38 38 H 1.08998 * 109.74506 * 289.84639 * 10 9 8 39 39 H 1.09001 * 109.53528 * 169.29699 * 10 9 8 40 40 H 0.96992 * 120.00246 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.60902 * 295.48363 * 20 11 10 42 42 H 1.09001 * 109.60881 * 174.96953 * 20 11 10 43 43 H 1.09000 * 109.61021 * 354.95160 * 21 8 6 44 44 H 1.08998 * 109.60986 * 115.45887 * 21 8 6 45 45 H 1.08003 * 126.13455 * 179.75504 * 22 5 4 46 46 H 1.08000 * 120.08085 * 0.28651 * 24 23 22 47 47 H 1.07995 * 119.69555 * 180.02562 * 25 24 23 48 48 H 1.08005 * 119.67266 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.10123 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5003 1.4443 -0.1166 5 6 4.2127 1.5055 -1.2985 6 6 3.6256 1.5790 -2.6449 7 8 2.5251 2.0728 -2.8025 8 7 4.3094 1.1043 -3.7050 9 6 5.6160 0.4567 -3.5232 10 6 5.5571 -0.9424 -4.1595 11 7 5.0121 -0.8162 -5.5186 12 6 5.7072 -1.2976 -6.5958 13 1 6.7862 -1.3366 -6.5686 14 6 5.0250 -1.7356 -7.7225 15 7 5.6711 -1.9133 -8.8554 16 14 3.1899 -2.0727 -7.6312 17 1 2.4431 -0.8738 -8.0896 18 1 2.8549 -3.2277 -8.5022 19 1 2.8131 -2.3843 -6.2290 20 6 3.7081 -0.1635 -5.7009 21 6 3.7644 1.2306 -5.0640 22 6 5.5421 1.4809 -1.0192 23 6 5.6857 1.4105 0.3876 24 6 6.7964 1.3613 1.2402 25 6 6.6130 1.2896 2.5903 26 6 5.3329 1.2642 3.1300 27 6 4.2257 1.3104 2.3132 28 6 4.3870 1.3853 0.9324 29 1 -0.3633 -1.0240 0.0869 30 1 -0.3634 0.5872 0.8434 31 1 -0.3635 0.4367 -0.9302 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.7491 1.9307 0.9302 35 1 1.6075 1.9808 -0.8434 36 1 6.3896 1.0505 -4.0100 37 1 5.8352 0.3674 -2.4592 38 1 4.9124 -1.5902 -3.5656 39 1 6.5610 -1.3644 -4.2058 40 1 5.1945 -2.2197 -9.6426 41 1 2.9317 -0.7558 -5.2167 42 1 3.4909 -0.0710 -6.7651 43 1 2.7605 1.6525 -5.0178 44 1 4.4091 1.8783 -5.6580 45 1 6.3452 1.5120 -1.7407 46 1 7.7951 1.3799 0.8297 47 1 7.4706 1.2522 3.2455 48 1 5.2053 1.2068 4.2010 49 1 3.2348 1.2905 2.7424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191726171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:39 Heat of formation + Delta-G solvation = 76.761783 kcal Electronic energy + Delta-G solvation = -30549.599412 eV Core-core repulsion = 26671.848803 eV Total energy + Delta-G solvation = -3877.750609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.89844 -39.59305 -37.49280 -36.84023 -35.27471 -34.07691 -32.24535 -31.51566 -31.02706 -29.99849 -29.17970 -27.28233 -26.26753 -24.37886 -23.78088 -22.77764 -22.26531 -21.56232 -21.13900 -20.37389 -19.09705 -17.23368 -17.14577 -16.69047 -16.38383 -15.68847 -15.57044 -15.22541 -14.98788 -14.68752 -14.55530 -14.28951 -14.26205 -14.00197 -13.92087 -13.45710 -13.38712 -13.12056 -12.81282 -12.56882 -12.38321 -12.30195 -12.09928 -11.92254 -11.86513 -11.74748 -11.24809 -11.15636 -11.07101 -10.99776 -10.81909 -10.45219 -10.23057 -10.09381 -9.91716 -9.68989 -9.53080 -8.93494 -8.47946 -8.26740 -7.78844 -7.01150 -6.01557 -3.43608 0.69864 1.49369 2.04878 2.36789 3.23138 3.25975 3.30312 3.43183 3.44431 3.76395 4.40540 4.44176 4.45531 4.51768 4.67332 4.81955 4.83948 4.91990 4.99392 5.05397 5.21127 5.24308 5.26870 5.36908 5.40663 5.47267 5.50909 5.53577 5.56133 5.70145 5.73224 5.76197 5.79890 5.84582 5.88400 5.93439 6.00072 6.03012 6.12676 6.28710 6.34153 6.45447 6.45869 6.53221 6.57744 6.63193 6.78839 6.95786 7.11132 7.56370 7.85638 8.20492 8.24675 8.82050 9.61606 9.97755 11.14072 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.003404 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.332743 B = 8222.779472 C = 9363.575567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.099 3.901 4 N -0.447 5.447 5 C 0.040 3.960 6 C 0.574 3.426 7 O -0.551 6.551 8 N -0.579 5.579 9 C 0.053 3.947 10 C 0.136 3.864 11 N -0.606 5.606 12 C -0.264 4.264 13 H 0.089 0.911 14 C 0.025 3.975 15 N -0.910 5.910 16 Si 0.885 3.115 17 H -0.288 1.288 18 H -0.302 1.302 19 H -0.268 1.268 20 C 0.113 3.887 21 C 0.097 3.903 22 C -0.159 4.159 23 C -0.113 4.113 24 C -0.062 4.062 25 C -0.152 4.152 26 C -0.095 4.095 27 C -0.128 4.128 28 C 0.106 3.894 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.028 0.972 39 H 0.078 0.922 40 H 0.264 0.736 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.166 0.834 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 7.029 23.290 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.021 4.021 4 N -0.127 5.127 5 C -0.070 4.070 6 C 0.362 3.638 7 O -0.432 6.432 8 N -0.309 5.309 9 C -0.070 4.070 10 C 0.010 3.990 11 N -0.330 5.330 12 C -0.392 4.392 13 H 0.106 0.894 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.716 3.284 17 H -0.216 1.216 18 H -0.231 1.231 19 H -0.193 1.193 20 C -0.013 4.013 21 C -0.027 4.027 22 C -0.185 4.185 23 C -0.118 4.118 24 C -0.081 4.081 25 C -0.171 4.171 26 C -0.115 4.115 27 C -0.149 4.149 28 C -0.003 4.003 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.183 0.817 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.852 7.206 22.951 24.362 hybrid contribution -1.027 -0.277 -0.175 1.078 sum -4.879 6.928 22.776 24.301 Atomic orbital electron populations 1.21670 0.94337 1.02246 1.02284 1.21874 0.96868 0.95874 1.02969 1.22146 0.76278 0.98747 1.04957 1.44037 1.05836 1.59590 1.03279 1.19902 0.91215 1.09075 0.86812 1.17193 0.84622 0.78981 0.83000 1.90731 1.20038 1.46882 1.85525 1.47741 1.20831 1.55917 1.06435 1.23435 0.83788 0.96506 1.03283 1.21387 0.99013 0.92562 0.86065 1.44297 1.19651 1.66528 1.02530 1.18943 0.91751 1.36598 0.91901 0.89371 1.25320 0.97753 0.98434 0.95958 1.69771 1.36109 1.49241 1.00116 0.86937 0.86683 0.77045 0.77693 1.21558 1.23069 1.19302 1.21793 0.88962 0.90873 0.99656 1.22343 0.99781 0.99986 0.80579 1.21323 0.94609 1.07931 0.94660 1.18198 0.92548 1.07740 0.93309 1.20400 0.97241 0.97711 0.92730 1.20598 0.97029 1.04494 0.94952 1.20817 0.91920 0.99637 0.99110 1.20016 0.99319 1.06198 0.89345 1.18371 0.88877 1.03619 0.89432 0.92086 0.92549 0.92024 0.91272 0.91624 0.89749 0.86896 0.90621 0.87355 0.95409 0.90363 0.92627 0.94790 0.90044 0.89510 0.90714 0.81660 0.85754 0.86064 0.85857 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.15 0.37 -0.97 16 2 C -0.14 -1.50 6.26 -26.73 -0.17 -1.66 16 3 C 0.10 1.16 5.80 -4.04 -0.02 1.13 16 4 N -0.45 -5.99 2.82 -110.35 -0.31 -6.31 16 5 C 0.04 0.59 6.44 -82.29 -0.53 0.06 16 6 C 0.57 9.69 7.52 -12.68 -0.10 9.59 16 7 O -0.55 -10.35 14.30 5.24 0.07 -10.28 16 8 N -0.58 -9.82 2.94 -173.62 -0.51 -10.33 16 9 C 0.05 0.81 5.47 -3.37 -0.02 0.79 16 10 C 0.14 2.52 6.69 -3.36 -0.02 2.50 16 11 N -0.61 -13.83 2.75 -171.76 -0.47 -14.30 16 12 C -0.26 -7.09 10.07 -15.06 -0.15 -7.24 16 13 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 14 C 0.02 0.69 5.33 -17.43 -0.09 0.60 16 15 N -0.91 -27.32 13.97 55.49 0.78 -26.54 16 16 Si 0.89 22.05 24.32 -169.99 -4.13 17.91 16 17 H -0.29 -6.92 6.77 56.52 0.38 -6.54 16 18 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 19 H -0.27 -6.57 6.04 56.52 0.34 -6.23 16 20 C 0.11 2.44 4.29 -3.60 -0.02 2.42 16 21 C 0.10 1.77 6.59 -3.60 -0.02 1.75 16 22 C -0.16 -2.06 8.44 -39.15 -0.33 -2.39 16 23 C -0.11 -1.42 6.16 -106.93 -0.66 -2.07 16 24 C -0.06 -0.64 10.06 -39.53 -0.40 -1.04 16 25 C -0.15 -1.37 9.97 -39.97 -0.40 -1.77 16 26 C -0.10 -0.85 10.01 -39.53 -0.40 -1.25 16 27 C -0.13 -1.32 10.00 -39.42 -0.39 -1.71 16 28 C 0.11 1.33 6.81 -83.97 -0.57 0.76 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.11 1.52 6.05 -51.93 -0.31 1.20 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.11 1.41 3.52 -51.93 -0.18 1.23 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.03 0.75 6.84 -51.93 -0.36 0.40 16 42 H 0.08 1.88 4.28 -51.93 -0.22 1.66 16 43 H 0.09 1.55 6.99 -51.93 -0.36 1.19 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.17 1.85 5.79 -52.48 -0.30 1.55 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -32.14 380.11 -10.06 -42.19 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.29 Total: 2.41 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.92 Total: -0.49 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.52 Total: -57.48 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.13 Total: 17.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.14 -10.06 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191726171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.956 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds