Wall clock time and date at job start Wed Apr 1 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.46887 * 2 1 4 4 N 1.46501 * 109.46994 * 184.84194 * 3 2 1 5 5 C 1.38142 * 125.60735 * 91.46489 * 4 3 2 6 6 C 1.47064 * 125.42703 * 359.97092 * 5 4 3 7 7 O 1.21646 * 120.00272 * 27.20858 * 6 5 4 8 8 N 1.34785 * 119.99675 * 206.93093 * 6 5 4 9 9 C 1.46960 * 120.59476 * 2.74425 * 8 6 5 10 10 C 1.53811 * 108.39876 * 124.75412 * 9 8 6 11 11 N 1.46973 * 108.57795 * 49.63862 * 10 9 8 12 12 C 1.36936 * 120.59515 * 124.62284 * 11 10 9 13 13 H 1.08002 * 120.00089 * 330.89143 * 12 11 10 14 14 C 1.38807 * 119.99825 * 150.88705 * 12 11 10 15 15 N 1.31623 * 120.00015 * 164.77280 * 14 12 11 16 16 Si 1.86799 * 120.00412 * 344.77594 * 14 12 11 17 17 H 1.48498 * 109.46991 * 95.36881 * 16 14 12 18 18 H 1.48495 * 109.47221 * 215.37255 * 16 14 12 19 19 H 1.48499 * 109.46862 * 335.37168 * 16 14 12 20 20 C 1.46961 * 118.81011 * 304.64663 * 11 10 9 21 21 C 1.46965 * 120.59190 * 183.02026 * 8 6 5 22 22 C 1.35865 * 109.14169 * 180.24381 * 5 4 3 23 23 C 1.41590 * 107.72391 * 359.60947 * 22 5 4 24 24 C 1.40101 * 133.37696 * 180.10528 * 23 22 5 25 25 C 1.36440 * 119.83074 * 180.30130 * 24 23 22 26 26 C 1.38940 * 120.61099 * 0.02562 * 25 24 23 27 27 C 1.37668 * 120.65458 * 0.02562 * 26 25 24 28 28 C 1.37484 * 125.60381 * 271.46172 * 4 3 2 29 29 H 1.09004 * 109.46769 * 184.85170 * 1 2 3 30 30 H 1.09004 * 109.47398 * 304.84705 * 1 2 3 31 31 H 1.09001 * 109.47796 * 64.85311 * 1 2 3 32 32 H 1.09004 * 109.47424 * 240.00398 * 2 1 3 33 33 H 1.09000 * 109.47738 * 119.99519 * 2 1 3 34 34 H 1.09000 * 109.46827 * 64.84394 * 3 2 1 35 35 H 1.08999 * 109.47142 * 304.83989 * 3 2 1 36 36 H 1.08996 * 109.61164 * 244.53931 * 9 8 6 37 37 H 1.09005 * 109.60949 * 5.04892 * 9 8 6 38 38 H 1.08998 * 109.74506 * 289.84639 * 10 9 8 39 39 H 1.09001 * 109.53528 * 169.29699 * 10 9 8 40 40 H 0.96992 * 120.00246 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.60902 * 295.48363 * 20 11 10 42 42 H 1.09001 * 109.60881 * 174.96953 * 20 11 10 43 43 H 1.09000 * 109.61021 * 354.95160 * 21 8 6 44 44 H 1.08998 * 109.60986 * 115.45887 * 21 8 6 45 45 H 1.08003 * 126.13455 * 179.75504 * 22 5 4 46 46 H 1.08000 * 120.08085 * 0.28651 * 24 23 22 47 47 H 1.07995 * 119.69555 * 180.02562 * 25 24 23 48 48 H 1.08005 * 119.67266 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.10123 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5003 1.4443 -0.1166 5 6 4.2127 1.5055 -1.2985 6 6 3.6256 1.5790 -2.6449 7 8 2.5251 2.0728 -2.8025 8 7 4.3094 1.1043 -3.7050 9 6 5.6160 0.4567 -3.5232 10 6 5.5571 -0.9424 -4.1595 11 7 5.0121 -0.8162 -5.5186 12 6 5.7072 -1.2976 -6.5958 13 1 6.7862 -1.3366 -6.5686 14 6 5.0250 -1.7356 -7.7225 15 7 5.6711 -1.9133 -8.8554 16 14 3.1899 -2.0727 -7.6312 17 1 2.4431 -0.8738 -8.0896 18 1 2.8549 -3.2277 -8.5022 19 1 2.8131 -2.3843 -6.2290 20 6 3.7081 -0.1635 -5.7009 21 6 3.7644 1.2306 -5.0640 22 6 5.5421 1.4809 -1.0192 23 6 5.6857 1.4105 0.3876 24 6 6.7964 1.3613 1.2402 25 6 6.6130 1.2896 2.5903 26 6 5.3329 1.2642 3.1300 27 6 4.2257 1.3104 2.3132 28 6 4.3870 1.3853 0.9324 29 1 -0.3633 -1.0240 0.0869 30 1 -0.3634 0.5872 0.8434 31 1 -0.3635 0.4367 -0.9302 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.7491 1.9307 0.9302 35 1 1.6075 1.9808 -0.8434 36 1 6.3896 1.0505 -4.0100 37 1 5.8352 0.3674 -2.4592 38 1 4.9124 -1.5902 -3.5656 39 1 6.5610 -1.3644 -4.2058 40 1 5.1945 -2.2197 -9.6426 41 1 2.9317 -0.7558 -5.2167 42 1 3.4909 -0.0710 -6.7651 43 1 2.7605 1.6525 -5.0178 44 1 4.4091 1.8783 -5.6580 45 1 6.3452 1.5120 -1.7407 46 1 7.7951 1.3799 0.8297 47 1 7.4706 1.2522 3.2455 48 1 5.2053 1.2068 4.2010 49 1 3.2348 1.2905 2.7424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191726171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:37 Heat of formation + Delta-G solvation = 59.010984 kcal Electronic energy + Delta-G solvation = -30550.369144 eV Core-core repulsion = 26671.848803 eV Total energy + Delta-G solvation = -3878.520342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.84712 -40.87956 -38.80885 -37.88527 -36.33859 -35.54080 -33.60035 -33.11047 -32.37314 -30.79064 -30.26148 -28.85266 -27.12741 -25.85581 -25.24085 -24.11916 -23.17874 -22.47487 -22.41980 -21.44999 -20.42648 -18.86000 -18.04827 -17.95338 -17.70306 -17.14742 -16.78119 -16.43705 -16.08883 -16.05874 -15.78184 -15.64901 -15.42578 -15.19301 -14.73930 -14.73514 -14.53841 -14.35754 -14.18577 -14.06910 -13.87607 -13.47382 -13.17329 -13.10222 -12.78753 -12.67085 -12.58552 -12.47555 -12.22380 -12.05008 -11.97068 -11.92310 -11.81133 -11.69552 -11.56965 -11.12934 -10.90198 -10.62872 -10.02514 -9.18125 -8.90169 -8.63288 -8.19118 -5.56718 -0.20312 0.71489 1.05835 1.24988 1.33572 1.38438 1.44792 2.07685 2.12170 2.35919 2.98585 3.04438 3.22009 3.27528 3.61902 3.68599 3.83730 3.98698 4.00834 4.07059 4.17170 4.20212 4.23149 4.28879 4.34248 4.38717 4.46315 4.47881 4.53229 4.57657 4.59207 4.64741 4.71426 4.77269 4.84514 4.87114 4.87705 4.98016 5.02838 5.09857 5.14946 5.23027 5.34461 5.55673 5.68260 5.73283 5.76368 5.81955 6.09113 6.09673 6.24641 6.31024 6.82445 6.90462 7.53719 7.95105 9.00198 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.003404 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.332743 B = 8222.779472 C = 9363.575567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.100 3.900 4 N -0.453 5.453 5 C 0.006 3.994 6 C 0.576 3.424 7 O -0.577 6.577 8 N -0.585 5.585 9 C 0.066 3.934 10 C 0.132 3.868 11 N -0.619 5.619 12 C -0.246 4.246 13 H 0.065 0.935 14 C -0.030 4.030 15 N -0.956 5.956 16 Si 0.942 3.058 17 H -0.277 1.277 18 H -0.311 1.311 19 H -0.264 1.264 20 C 0.113 3.887 21 C 0.107 3.893 22 C -0.148 4.148 23 C -0.138 4.138 24 C -0.069 4.069 25 C -0.151 4.151 26 C -0.085 4.085 27 C -0.142 4.142 28 C 0.094 3.906 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.028 0.972 39 H 0.085 0.915 40 H 0.262 0.738 41 H 0.029 0.971 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.180 0.820 46 H 0.143 0.857 47 H 0.149 0.851 48 H 0.154 0.846 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 7.686 27.268 28.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.021 4.021 4 N -0.134 5.134 5 C -0.104 4.104 6 C 0.366 3.634 7 O -0.459 6.459 8 N -0.315 5.315 9 C -0.056 4.056 10 C 0.006 3.994 11 N -0.343 5.343 12 C -0.375 4.375 13 H 0.083 0.917 14 C -0.225 4.225 15 N -0.602 5.602 16 Si 0.772 3.228 17 H -0.204 1.204 18 H -0.240 1.240 19 H -0.189 1.189 20 C -0.013 4.013 21 C -0.017 4.017 22 C -0.174 4.174 23 C -0.142 4.142 24 C -0.088 4.088 25 C -0.170 4.170 26 C -0.105 4.105 27 C -0.163 4.163 28 C -0.015 4.015 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.153 0.847 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.197 0.803 46 H 0.161 0.839 47 H 0.167 0.833 48 H 0.172 0.828 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.686 7.880 26.983 28.351 hybrid contribution -0.959 -0.449 -1.179 1.585 sum -4.645 7.432 25.804 27.252 Atomic orbital electron populations 1.21654 0.92995 1.02983 1.02506 1.21797 0.97964 0.95221 1.01795 1.22177 0.75794 0.98996 1.05130 1.44119 1.06305 1.59837 1.03119 1.19661 0.92047 1.12449 0.86215 1.17490 0.84102 0.78067 0.83748 1.90709 1.21207 1.47936 1.86042 1.47758 1.21382 1.56427 1.05930 1.23422 0.83303 0.94283 1.04621 1.21590 0.99092 0.94790 0.83910 1.44419 1.19871 1.66760 1.03279 1.18919 0.91098 1.34725 0.92753 0.91724 1.25879 1.01415 0.99396 0.95844 1.69889 1.37700 1.51717 1.00875 0.86016 0.82557 0.76760 0.77475 1.20357 1.24013 1.18861 1.21719 0.88109 0.92525 0.98902 1.22068 1.00369 0.97778 0.81481 1.21515 0.94124 1.06180 0.95573 1.18446 0.93468 1.09063 0.93212 1.20711 0.97499 0.97336 0.93228 1.21015 0.98189 1.02934 0.94858 1.21276 0.91422 0.97177 1.00607 1.20335 1.00875 1.06576 0.88477 1.18767 0.88818 1.03744 0.90196 0.91417 0.90407 0.93368 0.94427 0.90622 0.87289 0.89201 0.89678 0.84730 0.95373 0.89628 0.92868 0.95319 0.91728 0.89137 0.90319 0.80297 0.83927 0.83280 0.82797 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.13 -2.73 6.26 30.60 0.19 -2.54 16 3 C 0.10 2.24 5.80 86.38 0.50 2.74 16 4 N -0.45 -11.71 2.82 -503.04 -1.42 -13.13 16 5 C 0.01 0.18 6.44 39.91 0.26 0.43 16 6 C 0.58 19.34 7.52 86.56 0.65 19.99 16 7 O -0.58 -21.96 14.30 -4.18 -0.06 -22.02 16 8 N -0.58 -19.48 2.94 -821.44 -2.42 -21.90 16 9 C 0.07 1.93 5.47 86.57 0.47 2.40 16 10 C 0.13 4.76 6.69 86.56 0.58 5.33 16 11 N -0.62 -28.19 2.75 -697.34 -1.92 -30.11 16 12 C -0.25 -13.40 10.07 84.03 0.85 -12.56 16 13 H 0.07 3.78 8.06 -2.91 -0.02 3.76 16 14 C -0.03 -1.74 5.33 84.86 0.45 -1.29 16 15 N -0.96 -59.03 13.97 21.65 0.30 -58.73 16 16 Si 0.94 46.54 24.32 68.60 1.67 48.21 16 17 H -0.28 -13.01 6.77 99.48 0.67 -12.33 16 18 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 19 H -0.26 -12.68 6.04 99.48 0.60 -12.08 16 20 C 0.11 4.87 4.29 86.42 0.37 5.24 16 21 C 0.11 3.91 6.59 86.41 0.57 4.48 16 22 C -0.15 -3.58 8.44 22.55 0.19 -3.39 16 23 C -0.14 -3.13 6.16 -21.36 -0.13 -3.26 16 24 C -0.07 -1.19 10.06 22.30 0.22 -0.97 16 25 C -0.15 -2.09 9.97 22.02 0.22 -1.87 16 26 C -0.09 -1.16 10.01 22.30 0.22 -0.94 16 27 C -0.14 -2.47 10.00 22.37 0.22 -2.25 16 28 C 0.09 2.16 6.81 39.13 0.27 2.43 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 2.46 6.05 -2.39 -0.01 2.44 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.14 3.25 3.52 -2.38 -0.01 3.24 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 2.94 7.93 -2.39 -0.02 2.92 16 40 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.03 1.27 6.84 -2.39 -0.02 1.25 16 42 H 0.06 2.99 4.28 -2.39 -0.01 2.98 16 43 H 0.09 3.24 6.99 -2.39 -0.02 3.22 16 44 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.18 3.60 5.79 -2.91 -0.02 3.58 16 46 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 48 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 49 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -71.34 380.11 3.80 -67.54 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.82 Total: 17.89 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.82 Total: 12.26 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -5.45 Total: -123.87 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.67 Total: 48.21 kcal Total: -71.34 3.80 -67.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191726171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.549 kcal (2) G-P(sol) polarization free energy of solvation -71.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds