Wall clock time and date at job start Wed Apr 1 2020 00:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30836 * 125.89508 * 2 1 4 4 N 1.40084 * 108.20670 * 180.02562 * 3 2 1 5 5 C 1.46492 * 126.03864 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47042 * 90.02683 * 5 4 3 7 7 C 1.38233 * 119.99991 * 89.99766 * 6 5 4 8 8 C 1.38236 * 119.99713 * 179.97438 * 7 6 5 9 9 C 1.38231 * 120.00140 * 0.02875 * 8 7 6 10 10 C 1.38232 * 120.00123 * 0.24527 * 9 8 7 11 11 C 1.38231 * 119.99713 * 270.02170 * 6 5 4 12 12 C 1.34949 * 107.92292 * 0.25931 * 4 3 2 13 13 C 1.50693 * 126.12971 * 179.73514 * 12 4 3 14 14 C 1.35319 * 107.74468 * 359.57931 * 12 4 3 15 15 C 1.50706 * 126.03821 * 180.15957 * 14 12 4 16 16 H 1.08991 * 109.67830 * 7.51095 * 15 14 12 17 17 C 1.53300 * 109.67901 * 246.99262 * 15 14 12 18 18 O 1.42968 * 109.21680 * 187.97562 * 17 15 14 19 19 C 1.42961 * 114.16852 * 62.58308 * 18 17 15 20 20 C 1.53289 * 109.22222 * 297.41884 * 19 18 17 21 21 N 1.47151 * 108.38992 * 52.30014 * 20 19 18 22 22 C 1.36934 * 120.98249 * 129.48639 * 21 20 19 23 23 H 1.07999 * 120.00020 * 146.63061 * 22 21 20 24 24 C 1.38813 * 119.99897 * 326.62603 * 22 21 20 25 25 N 1.31620 * 120.00277 * 348.17866 * 24 22 21 26 26 Si 1.86805 * 119.99663 * 168.17307 * 24 22 21 27 27 H 1.48510 * 109.46968 * 90.00340 * 26 24 22 28 28 H 1.48496 * 109.47079 * 209.99940 * 26 24 22 29 29 H 1.48498 * 109.47332 * 330.00786 * 26 24 22 30 30 H 1.08994 * 109.47117 * 83.56847 * 1 2 3 31 31 H 1.09007 * 109.46834 * 203.56829 * 1 2 3 32 32 H 1.08997 * 109.47100 * 323.56155 * 1 2 3 33 33 H 1.08991 * 109.47389 * 330.02437 * 5 4 3 34 34 H 1.09000 * 109.47266 * 210.02079 * 5 4 3 35 35 H 1.08002 * 120.00177 * 0.02562 * 7 6 5 36 36 H 1.08006 * 120.00164 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00069 * 179.97438 * 9 8 7 38 38 H 1.07998 * 120.00065 * 179.72691 * 10 9 8 39 39 H 1.08003 * 120.00143 * 0.02562 * 11 6 5 40 40 H 1.08999 * 109.47318 * 90.02608 * 13 12 4 41 41 H 1.09005 * 109.47516 * 210.02632 * 13 12 4 42 42 H 1.09002 * 109.46977 * 330.02728 * 13 12 4 43 43 H 1.09002 * 109.51313 * 307.89845 * 17 15 14 44 44 H 1.08997 * 109.51272 * 68.05306 * 17 15 14 45 45 H 1.09007 * 109.51304 * 57.34117 * 19 18 17 46 46 H 1.08997 * 109.51340 * 177.43975 * 19 18 17 47 47 H 1.09003 * 109.68098 * 172.02607 * 20 19 18 48 48 H 1.09004 * 109.68065 * 292.53738 * 20 19 18 49 49 H 0.97000 * 119.99488 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6343 -0.0006 5 6 4.7898 1.5010 -0.0013 6 6 5.1959 1.7978 1.4193 7 6 6.0903 0.9688 2.0701 8 6 6.4632 1.2415 3.3730 9 6 5.9411 2.3428 4.0252 10 6 5.0423 3.1686 3.3763 11 6 4.6735 2.8989 2.0716 12 6 3.6143 -0.7152 -0.0068 13 6 4.8350 -1.5987 -0.0152 14 6 2.3272 -1.1329 -0.0005 15 6 1.8601 -2.5658 -0.0007 16 1 2.7143 -3.2303 0.1275 17 6 1.1564 -2.8792 -1.3261 18 8 0.5562 -4.1743 -1.2455 19 6 -0.4599 -4.2873 -0.2462 20 6 0.1610 -4.0459 1.1344 21 7 0.9002 -2.7741 1.0951 22 6 0.7010 -1.8132 2.0501 23 1 1.5213 -1.1838 2.3622 24 6 -0.5553 -1.6479 2.6169 25 7 -1.6014 -2.2428 2.0837 26 14 -0.7612 -0.5814 4.1367 27 1 -1.0362 0.8188 3.7252 28 1 -1.8955 -1.0905 4.9487 29 1 0.4843 -0.6244 4.9441 30 1 -0.3633 0.1151 -1.0211 31 1 -0.3633 -0.9420 0.4109 32 1 -0.3633 0.8267 0.6104 33 1 4.5559 2.4335 -0.5148 34 1 5.6089 0.9985 -0.5158 35 1 6.4985 0.1086 1.5603 36 1 7.1617 0.5936 3.8816 37 1 6.2321 2.5556 5.0433 38 1 4.6311 4.0265 3.8874 39 1 3.9740 3.5461 1.5634 40 1 5.1328 -1.8168 1.0104 41 1 4.6059 -2.5302 -0.5329 42 1 5.6495 -1.0882 -0.5292 43 1 0.3857 -2.1318 -1.5148 44 1 1.8845 -2.8651 -2.1370 45 1 -1.2365 -3.5451 -0.4310 46 1 -0.8951 -5.2860 -0.2809 47 1 -0.6263 -3.9898 1.8862 48 1 0.8434 -4.8604 1.3776 49 1 -2.4791 -2.1275 2.4801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378540190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:05 Heat of formation + Delta-G solvation = 89.811259 kcal Electronic energy + Delta-G solvation = -31428.512077 eV Core-core repulsion = 27551.327336 eV Total energy + Delta-G solvation = -3877.184741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.89508 -39.18405 -38.03902 -34.87606 -33.89680 -32.56334 -31.55273 -30.95308 -30.61573 -29.32703 -28.02303 -26.87554 -26.11723 -24.88474 -23.13622 -22.72221 -22.57334 -21.34255 -19.87893 -18.86077 -18.58433 -17.04118 -16.78359 -15.77908 -15.63230 -15.28380 -15.11946 -14.76727 -14.51376 -14.37061 -14.04179 -13.71508 -13.49834 -13.35097 -13.09326 -13.05402 -12.73642 -12.67861 -12.52431 -12.19448 -12.15035 -11.81767 -11.68293 -11.31700 -11.16182 -11.09358 -11.04504 -10.93243 -10.65618 -10.56967 -10.41107 -10.13690 -9.88837 -9.72030 -9.26320 -9.01129 -8.95814 -8.89176 -8.34313 -8.19547 -7.54671 -6.47398 -5.77936 -3.28504 1.18552 1.36559 2.46329 3.05132 3.37855 3.44679 3.47773 3.55812 3.83131 4.49952 4.59276 4.66108 4.81181 4.93025 4.98463 5.05787 5.11081 5.27271 5.34288 5.38586 5.45094 5.49144 5.54899 5.71627 5.74965 5.88611 5.97378 6.00514 6.06573 6.13692 6.17044 6.31661 6.37693 6.38312 6.44932 6.51834 6.55294 6.57543 6.60665 6.64962 6.73981 6.92735 6.96286 7.01372 7.30483 7.34504 7.52015 7.64682 7.82449 7.88805 8.18286 8.47294 8.55012 9.21758 9.79581 10.40265 11.24999 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.004698 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.964148 B = 5958.085080 C = 7224.212585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.134 3.866 3 N -0.319 5.319 4 N -0.380 5.380 5 C 0.182 3.818 6 C -0.109 4.109 7 C -0.100 4.100 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.123 4.123 11 C -0.090 4.090 12 C 0.071 3.929 13 C -0.086 4.086 14 C -0.196 4.196 15 C 0.213 3.787 16 H 0.037 0.963 17 C 0.056 3.944 18 O -0.403 6.403 19 C 0.051 3.949 20 C 0.121 3.879 21 N -0.585 5.585 22 C -0.219 4.219 23 H 0.061 0.939 24 C 0.004 3.996 25 N -0.903 5.903 26 Si 0.892 3.108 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.044 0.956 31 H 0.149 0.851 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.005 0.995 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.599 5.011 -2.939 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.032 4.032 3 N -0.140 5.140 4 N -0.163 5.163 5 C 0.060 3.940 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.142 4.142 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.109 4.109 12 C -0.054 4.054 13 C -0.144 4.144 14 C -0.208 4.208 15 C 0.106 3.894 16 H 0.054 0.946 17 C -0.022 4.022 18 O -0.322 6.322 19 C -0.026 4.026 20 C -0.004 4.004 21 N -0.310 5.310 22 C -0.349 4.349 23 H 0.079 0.921 24 C -0.194 4.194 25 N -0.549 5.549 26 Si 0.723 3.277 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.208 1.208 30 H 0.062 0.938 31 H 0.167 0.833 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.131 0.869 48 H 0.022 0.978 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.641 6.231 -3.003 15.294 hybrid contribution -0.253 0.131 1.194 1.227 sum 13.388 6.361 -1.809 14.932 Atomic orbital electron populations 1.20847 0.86274 1.08019 0.99870 1.22156 0.96990 0.89321 0.94768 1.77256 0.85726 1.22974 1.28065 1.48154 1.04804 1.03287 1.60033 1.20279 0.85058 0.95350 0.93345 1.20099 0.98039 0.96152 0.96722 1.21050 0.97353 0.98441 0.95061 1.21110 1.00576 0.97608 0.94868 1.21178 0.97247 0.95192 0.99699 1.21153 0.98062 1.00040 0.94895 1.21087 0.98034 0.96933 0.94838 1.20601 0.96560 0.84520 1.03730 1.20393 0.92965 0.98293 1.02756 1.19571 0.90463 0.96303 1.14419 1.19477 0.92160 0.88935 0.88839 0.94552 1.22992 0.96604 0.85160 0.97467 1.87739 1.54917 1.31803 1.57714 1.23003 0.89967 1.00051 0.89594 1.21664 0.96324 0.85567 0.96893 1.44206 1.46204 1.14787 1.25774 1.18922 0.92770 1.11198 1.12019 0.92084 1.25014 0.95272 0.99413 0.99698 1.69824 0.98396 1.46257 1.40378 0.86425 0.77235 0.80633 0.83440 1.21275 1.21577 1.20775 0.93756 0.83324 0.92899 0.88612 0.88913 0.86089 0.86020 0.86168 0.86052 0.85845 0.90780 0.89887 0.92070 0.93317 0.91079 0.92364 0.91127 0.86872 0.97755 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 8.30 36.01 0.30 -1.76 16 2 C 0.13 2.93 6.06 -82.41 -0.50 2.43 16 3 N -0.32 -6.61 12.58 33.67 0.42 -6.19 16 4 N -0.38 -6.57 3.60 -58.32 -0.21 -6.78 16 5 C 0.18 2.33 6.37 -5.20 -0.03 2.29 16 6 C -0.11 -1.44 5.46 -104.62 -0.57 -2.01 16 7 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 8 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 9 C -0.11 -1.33 10.05 -39.59 -0.40 -1.73 16 10 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 11 C -0.09 -1.22 9.70 -39.58 -0.38 -1.60 16 12 C 0.07 1.25 6.93 -82.27 -0.57 0.68 16 13 C -0.09 -1.12 9.51 36.00 0.34 -0.78 16 14 C -0.20 -4.03 3.84 -105.05 -0.40 -4.44 16 15 C 0.21 4.51 3.19 -68.57 -0.22 4.29 16 16 H 0.04 0.77 6.94 -51.93 -0.36 0.40 16 17 C 0.06 1.13 6.25 37.31 0.23 1.37 16 18 O -0.40 -8.51 10.74 -35.23 -0.38 -8.89 16 19 C 0.05 1.09 6.98 37.31 0.26 1.35 16 20 C 0.12 2.80 5.98 -3.54 -0.02 2.77 16 21 N -0.59 -14.00 2.42 -165.61 -0.40 -14.40 16 22 C -0.22 -5.67 5.76 -15.06 -0.09 -5.76 16 23 H 0.06 1.72 6.97 -52.49 -0.37 1.35 16 24 C 0.00 0.09 4.04 -17.43 -0.07 0.02 16 25 N -0.90 -23.66 10.44 55.49 0.58 -23.08 16 26 Si 0.89 21.70 29.57 -169.99 -5.03 16.68 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.15 3.69 3.76 -51.93 -0.20 3.49 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.09 0.92 6.98 -51.93 -0.36 0.56 16 35 H 0.12 1.24 7.87 -52.49 -0.41 0.83 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.05 7.29 -51.93 -0.38 0.67 16 42 H 0.06 0.61 7.07 -51.93 -0.37 0.25 16 43 H 0.05 1.04 6.93 -51.93 -0.36 0.68 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.34 8.14 -51.92 -0.42 0.91 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 47 H 0.11 2.87 5.49 -51.93 -0.29 2.58 16 48 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 49 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -29.84 383.83 -9.82 -39.66 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.29 Total: 5.44 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.30 Total: -8.21 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.39 Total: -50.46 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.38 Total: -8.89 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.84 -9.82 -39.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378540190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.469 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds