Wall clock time and date at job start Wed Apr 1 2020 00:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30836 * 125.89508 * 2 1 4 4 N 1.40084 * 108.20670 * 180.02562 * 3 2 1 5 5 C 1.46492 * 126.03864 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47042 * 90.02683 * 5 4 3 7 7 C 1.38233 * 119.99991 * 89.99766 * 6 5 4 8 8 C 1.38236 * 119.99713 * 179.97438 * 7 6 5 9 9 C 1.38231 * 120.00140 * 0.02875 * 8 7 6 10 10 C 1.38232 * 120.00123 * 0.24527 * 9 8 7 11 11 C 1.38231 * 119.99713 * 270.02170 * 6 5 4 12 12 C 1.34949 * 107.92292 * 0.25931 * 4 3 2 13 13 C 1.50693 * 126.12971 * 179.73514 * 12 4 3 14 14 C 1.35319 * 107.74468 * 359.57931 * 12 4 3 15 15 C 1.50706 * 126.03821 * 180.15957 * 14 12 4 16 16 H 1.08991 * 109.67830 * 7.51095 * 15 14 12 17 17 C 1.53300 * 109.67901 * 246.99262 * 15 14 12 18 18 O 1.42968 * 109.21680 * 187.97562 * 17 15 14 19 19 C 1.42961 * 114.16852 * 62.58308 * 18 17 15 20 20 C 1.53289 * 109.22222 * 297.41884 * 19 18 17 21 21 N 1.47151 * 108.38992 * 52.30014 * 20 19 18 22 22 C 1.36934 * 120.98249 * 129.48639 * 21 20 19 23 23 H 1.07999 * 120.00020 * 146.63061 * 22 21 20 24 24 C 1.38813 * 119.99897 * 326.62603 * 22 21 20 25 25 N 1.31620 * 120.00277 * 348.17866 * 24 22 21 26 26 Si 1.86805 * 119.99663 * 168.17307 * 24 22 21 27 27 H 1.48510 * 109.46968 * 90.00340 * 26 24 22 28 28 H 1.48496 * 109.47079 * 209.99940 * 26 24 22 29 29 H 1.48498 * 109.47332 * 330.00786 * 26 24 22 30 30 H 1.08994 * 109.47117 * 83.56847 * 1 2 3 31 31 H 1.09007 * 109.46834 * 203.56829 * 1 2 3 32 32 H 1.08997 * 109.47100 * 323.56155 * 1 2 3 33 33 H 1.08991 * 109.47389 * 330.02437 * 5 4 3 34 34 H 1.09000 * 109.47266 * 210.02079 * 5 4 3 35 35 H 1.08002 * 120.00177 * 0.02562 * 7 6 5 36 36 H 1.08006 * 120.00164 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00069 * 179.97438 * 9 8 7 38 38 H 1.07998 * 120.00065 * 179.72691 * 10 9 8 39 39 H 1.08003 * 120.00143 * 0.02562 * 11 6 5 40 40 H 1.08999 * 109.47318 * 90.02608 * 13 12 4 41 41 H 1.09005 * 109.47516 * 210.02632 * 13 12 4 42 42 H 1.09002 * 109.46977 * 330.02728 * 13 12 4 43 43 H 1.09002 * 109.51313 * 307.89845 * 17 15 14 44 44 H 1.08997 * 109.51272 * 68.05306 * 17 15 14 45 45 H 1.09007 * 109.51304 * 57.34117 * 19 18 17 46 46 H 1.08997 * 109.51340 * 177.43975 * 19 18 17 47 47 H 1.09003 * 109.68098 * 172.02607 * 20 19 18 48 48 H 1.09004 * 109.68065 * 292.53738 * 20 19 18 49 49 H 0.97000 * 119.99488 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6343 -0.0006 5 6 4.7898 1.5010 -0.0013 6 6 5.1959 1.7978 1.4193 7 6 6.0903 0.9688 2.0701 8 6 6.4632 1.2415 3.3730 9 6 5.9411 2.3428 4.0252 10 6 5.0423 3.1686 3.3763 11 6 4.6735 2.8989 2.0716 12 6 3.6143 -0.7152 -0.0068 13 6 4.8350 -1.5987 -0.0152 14 6 2.3272 -1.1329 -0.0005 15 6 1.8601 -2.5658 -0.0007 16 1 2.7143 -3.2303 0.1275 17 6 1.1564 -2.8792 -1.3261 18 8 0.5562 -4.1743 -1.2455 19 6 -0.4599 -4.2873 -0.2462 20 6 0.1610 -4.0459 1.1344 21 7 0.9002 -2.7741 1.0951 22 6 0.7010 -1.8132 2.0501 23 1 1.5213 -1.1838 2.3622 24 6 -0.5553 -1.6479 2.6169 25 7 -1.6014 -2.2428 2.0837 26 14 -0.7612 -0.5814 4.1367 27 1 -1.0362 0.8188 3.7252 28 1 -1.8955 -1.0905 4.9487 29 1 0.4843 -0.6244 4.9441 30 1 -0.3633 0.1151 -1.0211 31 1 -0.3633 -0.9420 0.4109 32 1 -0.3633 0.8267 0.6104 33 1 4.5559 2.4335 -0.5148 34 1 5.6089 0.9985 -0.5158 35 1 6.4985 0.1086 1.5603 36 1 7.1617 0.5936 3.8816 37 1 6.2321 2.5556 5.0433 38 1 4.6311 4.0265 3.8874 39 1 3.9740 3.5461 1.5634 40 1 5.1328 -1.8168 1.0104 41 1 4.6059 -2.5302 -0.5329 42 1 5.6495 -1.0882 -0.5292 43 1 0.3857 -2.1318 -1.5148 44 1 1.8845 -2.8651 -2.1370 45 1 -1.2365 -3.5451 -0.4310 46 1 -0.8951 -5.2860 -0.2809 47 1 -0.6263 -3.9898 1.8862 48 1 0.8434 -4.8604 1.3776 49 1 -2.4791 -2.1275 2.4801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378540190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:04 Heat of formation + Delta-G solvation = 74.263229 kcal Electronic energy + Delta-G solvation = -31429.186290 eV Core-core repulsion = 27551.327336 eV Total energy + Delta-G solvation = -3877.858955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.32103 -40.18260 -39.66880 -36.54050 -35.27930 -34.09648 -32.91708 -32.36002 -31.85277 -30.75722 -29.46598 -28.62823 -27.51475 -26.17586 -25.00512 -24.23731 -23.55715 -22.38263 -21.58258 -20.36631 -20.04578 -18.66031 -17.95448 -17.22769 -17.02623 -16.56229 -16.46654 -16.30776 -16.13363 -15.67664 -15.53290 -15.32760 -15.11504 -14.52052 -14.41925 -14.29564 -14.26428 -13.91373 -13.65328 -13.57758 -13.40202 -13.24426 -13.13534 -12.91694 -12.86981 -12.70408 -12.57934 -12.32516 -12.15718 -12.08593 -12.01147 -11.92700 -11.68930 -11.38621 -10.95919 -10.76292 -10.17419 -9.88467 -9.87671 -9.71643 -9.05916 -8.34178 -7.77051 -5.27514 0.22661 0.44258 1.07218 1.39077 1.44140 1.48613 1.83572 1.96044 2.52449 2.87566 3.17026 3.35985 3.56650 3.70876 3.72873 3.92480 3.99763 4.06895 4.20997 4.25379 4.33115 4.39385 4.41533 4.48406 4.57333 4.60598 4.67021 4.75245 4.75659 4.79115 4.80193 4.87175 4.89210 4.95708 4.99377 5.06192 5.08537 5.13934 5.31870 5.42217 5.47603 5.54513 5.55872 5.59300 5.65573 5.70142 5.75310 6.03470 6.10390 6.36346 6.46174 6.56130 7.02050 7.24484 7.88533 8.45056 9.23328 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.004698 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.964148 B = 5958.085080 C = 7224.212585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.111 3.889 3 N -0.345 5.345 4 N -0.369 5.369 5 C 0.174 3.826 6 C -0.123 4.123 7 C -0.106 4.106 8 C -0.130 4.130 9 C -0.121 4.121 10 C -0.138 4.138 11 C -0.113 4.113 12 C 0.088 3.912 13 C -0.085 4.085 14 C -0.231 4.231 15 C 0.216 3.784 16 H 0.045 0.955 17 C 0.060 3.940 18 O -0.403 6.403 19 C 0.063 3.937 20 C 0.121 3.879 21 N -0.596 5.596 22 C -0.204 4.204 23 H 0.038 0.962 24 C -0.025 4.025 25 N -0.913 5.913 26 Si 0.928 3.072 27 H -0.296 1.296 28 H -0.287 1.287 29 H -0.288 1.288 30 H 0.053 0.947 31 H 0.128 0.872 32 H 0.035 0.965 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.031 0.969 44 H 0.100 0.900 45 H 0.035 0.965 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.011 0.989 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.603 4.258 -3.376 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 N -0.168 5.168 4 N -0.151 5.151 5 C 0.054 3.946 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.148 4.148 9 C -0.139 4.139 10 C -0.156 4.156 11 C -0.132 4.132 12 C -0.040 4.040 13 C -0.143 4.143 14 C -0.243 4.243 15 C 0.110 3.890 16 H 0.063 0.937 17 C -0.018 4.018 18 O -0.322 6.322 19 C -0.015 4.015 20 C -0.004 4.004 21 N -0.321 5.321 22 C -0.335 4.335 23 H 0.056 0.944 24 C -0.221 4.221 25 N -0.559 5.559 26 Si 0.759 3.241 27 H -0.223 1.223 28 H -0.213 1.213 29 H -0.214 1.214 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.054 0.946 33 H 0.119 0.881 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.049 0.951 44 H 0.118 0.882 45 H 0.054 0.946 46 H 0.115 0.885 47 H 0.109 0.891 48 H 0.029 0.971 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.655 5.489 -3.446 17.871 hybrid contribution -1.035 0.442 1.348 1.756 sum 15.620 5.932 -2.098 16.839 Atomic orbital electron populations 1.20626 0.87781 1.05985 0.99876 1.22033 0.96570 0.90459 0.96365 1.77156 0.87600 1.23201 1.28848 1.48498 1.04621 1.03965 1.58052 1.20710 0.84349 0.95623 0.93939 1.20174 0.98843 0.96511 0.96918 1.21371 0.96855 0.98750 0.95433 1.21503 1.00661 0.97748 0.94910 1.21536 0.96641 0.94982 1.00772 1.21412 0.98541 1.00891 0.94774 1.21239 0.98637 0.97658 0.95668 1.21218 0.97188 0.84943 1.00628 1.20581 0.91911 0.98037 1.03820 1.19596 0.91717 0.95533 1.17416 1.19507 0.91595 0.89792 0.88112 0.93696 1.23021 0.96528 0.84241 0.98007 1.87737 1.54744 1.32282 1.57426 1.22855 0.89291 1.00797 0.88554 1.21593 0.95844 0.85538 0.97459 1.44339 1.46747 1.14555 1.26451 1.18627 0.91813 1.10837 1.12248 0.94446 1.25279 0.95364 1.00393 1.01036 1.69898 0.98222 1.47020 1.40800 0.85887 0.76752 0.79388 0.82083 1.22332 1.21251 1.21407 0.92860 0.85417 0.94621 0.88051 0.85045 0.83788 0.83559 0.83982 0.84907 0.86662 0.90120 0.89125 0.88250 0.95086 0.88160 0.94639 0.88484 0.89132 0.97126 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.93 8.30 71.24 0.59 -3.34 16 2 C 0.11 4.90 6.06 43.10 0.26 5.16 16 3 N -0.35 -14.36 12.58 -47.38 -0.60 -14.95 16 4 N -0.37 -12.10 3.60 -338.43 -1.22 -13.31 16 5 C 0.17 4.00 6.37 85.64 0.55 4.54 16 6 C -0.12 -3.02 5.46 -19.87 -0.11 -3.12 16 7 C -0.11 -2.23 9.70 22.27 0.22 -2.02 16 8 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 9 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 10 C -0.14 -3.29 10.05 22.27 0.22 -3.07 16 11 C -0.11 -3.00 9.70 22.27 0.22 -2.78 16 12 C 0.09 2.88 6.93 41.40 0.29 3.16 16 13 C -0.09 -1.86 9.51 71.23 0.68 -1.18 16 14 C -0.23 -9.31 3.84 -20.14 -0.08 -9.39 16 15 C 0.22 8.93 3.19 44.22 0.14 9.07 16 16 H 0.05 1.78 6.94 -2.39 -0.02 1.77 16 17 C 0.06 2.35 6.25 72.08 0.45 2.80 16 18 O -0.40 -16.40 10.74 -148.98 -1.60 -18.00 16 19 C 0.06 2.61 6.98 72.08 0.50 3.12 16 20 C 0.12 5.58 5.98 86.35 0.52 6.09 16 21 N -0.60 -28.56 2.42 -677.87 -1.64 -30.20 16 22 C -0.20 -10.75 5.76 84.03 0.48 -10.27 16 23 H 0.04 2.15 6.97 -2.91 -0.02 2.13 16 24 C -0.02 -1.31 4.04 84.86 0.34 -0.97 16 25 N -0.91 -48.98 10.44 21.65 0.23 -48.75 16 26 Si 0.93 45.47 29.57 68.60 2.03 47.50 16 27 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.13 6.56 3.76 -2.38 -0.01 6.55 16 32 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.22 8.08 -2.39 -0.02 2.20 16 34 H 0.13 1.99 6.98 -2.39 -0.02 1.98 16 35 H 0.14 2.28 7.87 -2.91 -0.02 2.26 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 39 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.09 1.89 7.29 -2.38 -0.02 1.87 16 42 H 0.10 1.41 7.07 -2.39 -0.02 1.39 16 43 H 0.03 1.32 6.93 -2.39 -0.02 1.30 16 44 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.09 4.64 5.49 -2.39 -0.01 4.63 16 48 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 49 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -66.04 383.83 3.87 -62.17 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.95 Total: 22.46 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.72 Total: -6.91 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.23 Total: -107.22 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.60 Total: -18.00 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.04 3.87 -62.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378540190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.432 kcal (2) G-P(sol) polarization free energy of solvation -66.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds