Wall clock time and date at job start Wed Apr 1 2020 00:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34852 * 125.77451 * 2 1 4 4 C 1.50697 * 125.95995 * 0.02562 * 3 2 1 5 5 N 1.46895 * 109.47058 * 95.28745 * 4 3 2 6 6 C 1.46902 * 111.00117 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47422 * 182.23379 * 6 5 4 8 8 C 1.50705 * 115.54915 * 65.03885 * 7 6 5 9 9 H 1.08005 * 119.99814 * 265.93217 * 8 7 6 10 10 C 1.37876 * 119.99979 * 85.92651 * 8 7 6 11 11 N 1.31511 * 120.00099 * 354.15416 * 10 8 7 12 12 Si 1.86805 * 119.99850 * 174.14978 * 10 8 7 13 13 H 1.48494 * 109.46909 * 90.00281 * 12 10 8 14 14 H 1.48499 * 109.46818 * 210.00274 * 12 10 8 15 15 H 1.48496 * 109.47163 * 330.00342 * 12 10 8 16 16 C 1.52995 * 117.49812 * 279.37511 * 7 6 5 17 17 C 1.52990 * 117.50167 * 210.71053 * 7 6 5 18 18 C 1.41448 * 108.08105 * 180.27588 * 3 2 1 19 19 O 1.21788 * 126.18096 * 179.77173 * 18 3 2 20 20 N 1.34860 * 107.62707 * 359.75413 * 18 3 2 21 21 C 1.39841 * 126.16658 * 180.02562 * 20 18 3 22 22 C 1.38894 * 120.07764 * 131.42340 * 21 20 18 23 23 C 1.38105 * 119.92918 * 179.72302 * 22 21 20 24 24 C 1.38284 * 120.07283 * 0.54958 * 23 22 21 25 25 C 1.38287 * 120.14597 * 359.72120 * 24 23 22 26 26 C 1.38115 * 120.06976 * 0.02562 * 25 24 23 27 27 N 1.36606 * 125.78057 * 179.86049 * 2 1 3 28 28 C 1.46502 * 125.91486 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.47234 * 180.16516 * 1 2 3 30 30 H 1.09002 * 109.47108 * 300.16694 * 1 2 3 31 31 H 1.09001 * 109.47395 * 60.16305 * 1 2 3 32 32 H 1.08998 * 109.47327 * 215.29167 * 4 3 2 33 33 H 1.09004 * 109.46754 * 335.29235 * 4 3 2 34 34 H 1.00898 * 111.00050 * 303.95536 * 5 4 3 35 35 H 1.08998 * 109.46615 * 302.23209 * 6 5 4 36 36 H 1.08999 * 109.47323 * 62.23311 * 6 5 4 37 37 H 0.97001 * 120.00383 * 179.97438 * 11 10 8 38 38 H 1.08993 * 117.50173 * 359.97438 * 16 7 6 39 39 H 1.09006 * 117.50056 * 145.01929 * 16 7 6 40 40 H 1.09003 * 117.50126 * 214.97686 * 17 7 6 41 41 H 1.09002 * 117.50228 * 359.97438 * 17 7 6 42 42 H 1.08001 * 120.03173 * 359.97073 * 22 21 20 43 43 H 1.08003 * 119.96457 * 180.26980 * 23 22 21 44 44 H 1.08001 * 119.93058 * 179.70151 * 24 23 22 45 45 H 1.07992 * 119.96677 * 180.02562 * 25 24 23 46 46 H 1.07996 * 120.03272 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47656 * 174.45926 * 28 27 2 48 48 H 1.08999 * 109.46765 * 54.45188 * 28 27 2 49 49 H 1.09002 * 109.46834 * 294.46115 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2953 1.0941 0.0000 4 6 1.8230 2.5251 0.0005 5 7 1.7912 3.0297 1.3797 6 6 1.3338 4.4252 1.4194 7 6 1.3671 4.9320 2.8626 8 6 2.7349 5.0212 3.4888 9 1 3.1132 4.1996 4.0790 10 6 3.5034 6.1516 3.3082 11 7 3.0938 7.1026 2.4975 12 14 5.1265 6.3322 4.2152 13 1 6.2205 5.7587 3.3911 14 1 5.3967 7.7710 4.4645 15 1 5.0524 5.6107 5.5110 16 6 0.1972 4.5512 3.7722 17 6 0.3361 5.9886 3.2642 18 6 3.6429 0.6642 -0.0065 19 8 4.6265 1.3822 -0.0122 20 7 3.6413 -0.6844 -0.0047 21 6 4.7693 -1.5109 -0.0091 22 6 4.8651 -2.5627 0.8931 23 6 5.9778 -3.3805 0.8823 24 6 7.0012 -3.1464 -0.0178 25 6 6.9116 -2.0968 -0.9136 26 6 5.7991 -1.2783 -0.9115 27 7 2.3057 -1.1082 0.0027 28 6 1.8456 -2.4991 0.0066 29 1 -0.3633 -1.0276 0.0030 30 1 -0.3633 0.5164 0.8885 31 1 -0.3634 0.5113 -0.8914 32 1 2.5054 3.1332 -0.5932 33 1 0.8224 2.5776 -0.4287 34 1 1.2155 2.4441 1.9659 35 1 1.9897 5.0401 0.8032 36 1 0.3149 4.4846 1.0369 37 1 3.6343 7.8981 2.3707 38 1 -0.5963 3.9400 3.3423 39 1 0.4169 4.3657 4.8236 40 1 0.6469 6.7480 3.9817 41 1 -0.3658 6.3230 2.5002 42 1 4.0683 -2.7431 1.5995 43 1 6.0509 -4.2012 1.5806 44 1 7.8725 -3.7845 -0.0209 45 1 7.7123 -1.9168 -1.6155 46 1 5.7296 -0.4589 -1.6117 47 1 2.7024 -3.1656 -0.0911 48 1 1.1639 -2.6586 -0.8289 49 1 1.3278 -2.7079 0.9428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430022158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:22 Heat of formation + Delta-G solvation = 114.052244 kcal Electronic energy + Delta-G solvation = -29667.788868 eV Core-core repulsion = 25791.655295 eV Total energy + Delta-G solvation = -3876.133573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.87335 -39.18308 -37.14002 -36.91621 -35.03206 -33.50786 -32.16574 -31.64263 -31.17753 -30.72247 -28.26864 -26.79600 -25.50816 -24.74206 -23.19745 -22.88504 -22.31119 -20.91835 -20.19757 -19.89004 -18.83502 -18.00415 -16.66968 -16.42238 -16.18522 -15.79651 -15.21267 -14.82923 -14.63014 -14.53285 -14.25092 -14.03563 -13.76989 -13.74246 -13.52989 -13.32961 -13.22665 -13.21331 -13.04986 -12.87089 -12.61535 -12.26322 -11.88527 -11.68253 -11.34347 -11.26066 -11.15773 -11.01645 -10.75086 -10.52498 -10.30252 -10.04623 -9.98699 -9.51918 -9.28889 -9.25036 -8.64961 -8.54583 -8.19232 -7.93319 -7.53305 -7.24460 -5.78605 -3.78843 0.79338 1.07862 1.47046 1.68867 3.32982 3.40210 3.49293 3.55855 3.58945 3.67993 4.38967 4.44092 4.61569 4.64758 4.64920 4.78146 4.84656 4.87337 5.03003 5.09907 5.18168 5.19390 5.29158 5.31939 5.40730 5.52125 5.59055 5.64185 5.69667 5.76475 5.94765 6.04467 6.10672 6.17386 6.21380 6.28221 6.34715 6.48820 6.49602 6.63119 6.66573 6.80052 6.84713 7.06757 7.17644 7.24597 7.42688 7.60383 7.76917 8.14924 8.18881 8.40841 8.50379 8.73394 9.19341 9.83988 11.31495 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003244 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.579985 B = 8629.941527 C =10280.238463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.182 3.818 3 C -0.285 4.285 4 C 0.151 3.849 5 N -0.661 5.661 6 C 0.109 3.891 7 C 0.055 3.945 8 C -0.466 4.466 9 H 0.057 0.943 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.886 3.114 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.276 1.276 16 C -0.217 4.217 17 C -0.158 4.158 18 C 0.547 3.453 19 O -0.515 6.515 20 N -0.378 5.378 21 C 0.159 3.841 22 C -0.134 4.134 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.100 4.100 26 C -0.106 4.106 27 N -0.402 5.402 28 C 0.101 3.899 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.325 0.675 35 H 0.076 0.924 36 H -0.008 1.008 37 H 0.256 0.744 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -25.354 -9.016 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.068 3.932 3 C -0.298 4.298 4 C 0.021 3.979 5 N -0.291 5.291 6 C -0.020 4.020 7 C 0.054 3.946 8 C -0.504 4.504 9 H 0.076 0.924 10 C -0.133 4.133 11 N -0.525 5.525 12 Si 0.714 3.286 13 H -0.206 1.206 14 H -0.216 1.216 15 H -0.201 1.201 16 C -0.254 4.254 17 C -0.196 4.196 18 C 0.345 3.655 19 O -0.389 6.389 20 N -0.193 5.193 21 C 0.068 3.932 22 C -0.155 4.155 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.118 4.118 26 C -0.127 4.127 27 N -0.198 5.198 28 C -0.040 4.040 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.010 0.990 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.403 -24.862 -9.089 26.580 hybrid contribution -0.009 -0.068 0.392 0.398 sum -2.412 -24.930 -8.697 26.514 Atomic orbital electron populations 1.20642 0.86317 1.03606 1.04905 1.20736 0.93356 0.84648 0.94447 1.20245 0.92173 0.95984 1.21383 1.19941 0.97473 0.88478 0.91987 1.60247 1.58423 1.03287 1.07143 1.21547 0.94335 0.87570 0.98535 1.18818 0.89949 0.96103 0.89741 1.20288 0.98637 1.01014 1.30499 0.92441 1.24896 0.97319 0.96035 0.95055 1.70003 1.38074 1.08475 1.35942 0.86689 0.84880 0.76677 0.80323 1.20648 1.21554 1.20123 1.22985 1.03275 0.99167 1.00017 1.22499 1.03356 0.91142 1.02587 1.16968 0.91290 0.78469 0.78773 1.90916 1.39982 1.55162 1.52840 1.45789 0.94463 1.06507 1.72562 1.17490 0.86383 0.93064 0.96259 1.21139 0.99766 0.96797 0.97773 1.20999 0.93162 0.99271 0.98846 1.21224 0.98908 0.98153 0.96102 1.21066 0.97181 0.94532 0.99053 1.21159 0.94005 1.00092 0.97400 1.46072 0.93967 1.05258 1.74541 1.21951 1.00928 0.77984 1.03157 0.90931 0.88744 0.88898 0.90525 0.95859 0.85813 0.90581 0.98999 0.93465 0.92325 0.90676 0.90116 0.92215 0.85702 0.85342 0.85532 0.85106 0.85066 0.89402 0.90123 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.67 36.00 0.35 -0.38 16 2 C 0.18 2.20 6.94 -81.67 -0.57 1.63 16 3 C -0.28 -4.77 5.64 -104.60 -0.59 -5.36 16 4 C 0.15 2.76 5.97 -4.98 -0.03 2.73 16 5 N -0.66 -14.14 6.38 -115.06 -0.73 -14.88 16 6 C 0.11 2.56 5.51 -3.82 -0.02 2.54 16 7 C 0.05 1.40 1.54 -155.67 -0.24 1.16 16 8 C -0.47 -13.59 8.74 -34.44 -0.30 -13.89 16 9 H 0.06 1.73 7.82 -52.48 -0.41 1.31 16 10 C 0.07 2.01 5.39 -17.82 -0.10 1.92 16 11 N -0.89 -26.62 12.88 55.43 0.71 -25.91 16 12 Si 0.89 23.16 29.54 -169.99 -5.02 18.14 16 13 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 16 C -0.22 -4.85 9.96 -26.70 -0.27 -5.11 16 17 C -0.16 -3.84 9.37 -26.70 -0.25 -4.09 16 18 C 0.55 10.61 7.68 -15.00 -0.12 10.49 16 19 O -0.51 -12.31 17.32 5.11 0.09 -12.22 16 20 N -0.38 -5.73 3.65 -12.49 -0.05 -5.78 16 21 C 0.16 2.16 5.72 -83.72 -0.48 1.68 16 22 C -0.13 -1.45 8.25 -39.39 -0.33 -1.77 16 23 C -0.10 -0.91 10.04 -39.61 -0.40 -1.31 16 24 C -0.13 -1.08 10.04 -39.55 -0.40 -1.48 16 25 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 26 C -0.11 -1.38 9.29 -39.38 -0.37 -1.74 16 27 N -0.40 -4.60 4.05 -63.60 -0.26 -4.85 16 28 C 0.10 0.63 9.84 59.85 0.59 1.21 16 29 H 0.07 0.34 7.39 -51.93 -0.38 -0.04 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.02 0.36 7.71 -51.93 -0.40 -0.04 16 34 H 0.33 6.38 8.75 -39.29 -0.34 6.04 16 35 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 36 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.13 1.19 7.53 -52.49 -0.40 0.79 16 43 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.13 1.85 7.92 -52.49 -0.42 1.43 16 47 H 0.09 0.52 6.13 -51.93 -0.32 0.20 16 48 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 49 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 410.01 15.07 6.18 6.18 Total: -1.00 -37.44 410.01 -10.70 -48.14 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.72 Total: 4.36 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.90 Total: -13.18 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.32 Total: -51.42 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.44 -10.70 -48.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430022158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.192 kcal (2) G-P(sol) polarization free energy of solvation -37.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds