Wall clock time and date at job start Wed Apr 1 2020 00:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34852 * 125.77451 * 2 1 4 4 C 1.50697 * 125.95995 * 0.02562 * 3 2 1 5 5 N 1.46895 * 109.47058 * 95.28745 * 4 3 2 6 6 C 1.46902 * 111.00117 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47422 * 182.23379 * 6 5 4 8 8 C 1.50705 * 115.54915 * 65.03885 * 7 6 5 9 9 H 1.08005 * 119.99814 * 265.93217 * 8 7 6 10 10 C 1.37876 * 119.99979 * 85.92651 * 8 7 6 11 11 N 1.31511 * 120.00099 * 354.15416 * 10 8 7 12 12 Si 1.86805 * 119.99850 * 174.14978 * 10 8 7 13 13 H 1.48494 * 109.46909 * 90.00281 * 12 10 8 14 14 H 1.48499 * 109.46818 * 210.00274 * 12 10 8 15 15 H 1.48496 * 109.47163 * 330.00342 * 12 10 8 16 16 C 1.52995 * 117.49812 * 279.37511 * 7 6 5 17 17 C 1.52990 * 117.50167 * 210.71053 * 7 6 5 18 18 C 1.41448 * 108.08105 * 180.27588 * 3 2 1 19 19 O 1.21788 * 126.18096 * 179.77173 * 18 3 2 20 20 N 1.34860 * 107.62707 * 359.75413 * 18 3 2 21 21 C 1.39841 * 126.16658 * 180.02562 * 20 18 3 22 22 C 1.38894 * 120.07764 * 131.42340 * 21 20 18 23 23 C 1.38105 * 119.92918 * 179.72302 * 22 21 20 24 24 C 1.38284 * 120.07283 * 0.54958 * 23 22 21 25 25 C 1.38287 * 120.14597 * 359.72120 * 24 23 22 26 26 C 1.38115 * 120.06976 * 0.02562 * 25 24 23 27 27 N 1.36606 * 125.78057 * 179.86049 * 2 1 3 28 28 C 1.46502 * 125.91486 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.47234 * 180.16516 * 1 2 3 30 30 H 1.09002 * 109.47108 * 300.16694 * 1 2 3 31 31 H 1.09001 * 109.47395 * 60.16305 * 1 2 3 32 32 H 1.08998 * 109.47327 * 215.29167 * 4 3 2 33 33 H 1.09004 * 109.46754 * 335.29235 * 4 3 2 34 34 H 1.00898 * 111.00050 * 303.95536 * 5 4 3 35 35 H 1.08998 * 109.46615 * 302.23209 * 6 5 4 36 36 H 1.08999 * 109.47323 * 62.23311 * 6 5 4 37 37 H 0.97001 * 120.00383 * 179.97438 * 11 10 8 38 38 H 1.08993 * 117.50173 * 359.97438 * 16 7 6 39 39 H 1.09006 * 117.50056 * 145.01929 * 16 7 6 40 40 H 1.09003 * 117.50126 * 214.97686 * 17 7 6 41 41 H 1.09002 * 117.50228 * 359.97438 * 17 7 6 42 42 H 1.08001 * 120.03173 * 359.97073 * 22 21 20 43 43 H 1.08003 * 119.96457 * 180.26980 * 23 22 21 44 44 H 1.08001 * 119.93058 * 179.70151 * 24 23 22 45 45 H 1.07992 * 119.96677 * 180.02562 * 25 24 23 46 46 H 1.07996 * 120.03272 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47656 * 174.45926 * 28 27 2 48 48 H 1.08999 * 109.46765 * 54.45188 * 28 27 2 49 49 H 1.09002 * 109.46834 * 294.46115 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2953 1.0941 0.0000 4 6 1.8230 2.5251 0.0005 5 7 1.7912 3.0297 1.3797 6 6 1.3338 4.4252 1.4194 7 6 1.3671 4.9320 2.8626 8 6 2.7349 5.0212 3.4888 9 1 3.1132 4.1996 4.0790 10 6 3.5034 6.1516 3.3082 11 7 3.0938 7.1026 2.4975 12 14 5.1265 6.3322 4.2152 13 1 6.2205 5.7587 3.3911 14 1 5.3967 7.7710 4.4645 15 1 5.0524 5.6107 5.5110 16 6 0.1972 4.5512 3.7722 17 6 0.3361 5.9886 3.2642 18 6 3.6429 0.6642 -0.0065 19 8 4.6265 1.3822 -0.0122 20 7 3.6413 -0.6844 -0.0047 21 6 4.7693 -1.5109 -0.0091 22 6 4.8651 -2.5627 0.8931 23 6 5.9778 -3.3805 0.8823 24 6 7.0012 -3.1464 -0.0178 25 6 6.9116 -2.0968 -0.9136 26 6 5.7991 -1.2783 -0.9115 27 7 2.3057 -1.1082 0.0027 28 6 1.8456 -2.4991 0.0066 29 1 -0.3633 -1.0276 0.0030 30 1 -0.3633 0.5164 0.8885 31 1 -0.3634 0.5113 -0.8914 32 1 2.5054 3.1332 -0.5932 33 1 0.8224 2.5776 -0.4287 34 1 1.2155 2.4441 1.9659 35 1 1.9897 5.0401 0.8032 36 1 0.3149 4.4846 1.0369 37 1 3.6343 7.8981 2.3707 38 1 -0.5963 3.9400 3.3423 39 1 0.4169 4.3657 4.8236 40 1 0.6469 6.7480 3.9817 41 1 -0.3658 6.3230 2.5002 42 1 4.0683 -2.7431 1.5995 43 1 6.0509 -4.2012 1.5806 44 1 7.8725 -3.7845 -0.0209 45 1 7.7123 -1.9168 -1.6155 46 1 5.7296 -0.4589 -1.6117 47 1 2.7024 -3.1656 -0.0911 48 1 1.1639 -2.6586 -0.8289 49 1 1.3278 -2.7079 0.9428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430022158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:20 Heat of formation + Delta-G solvation = 88.725486 kcal Electronic energy + Delta-G solvation = -29668.887119 eV Core-core repulsion = 25791.655295 eV Total energy + Delta-G solvation = -3877.231824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.97808 -40.03562 -38.78072 -38.44129 -36.41116 -34.72346 -33.88650 -33.17231 -32.00864 -31.53707 -29.35893 -27.93148 -27.37581 -26.15596 -24.57993 -23.76669 -23.41397 -22.76407 -21.34224 -20.99605 -20.76083 -19.01635 -18.09966 -17.46244 -17.43501 -17.07296 -16.62407 -16.33506 -16.09687 -15.73536 -15.43218 -15.28372 -15.03472 -15.01744 -14.79953 -14.55577 -14.41855 -14.15391 -13.97604 -13.84797 -13.61722 -13.34049 -13.18931 -12.98831 -12.91484 -12.66235 -12.57598 -12.56961 -12.53406 -12.33511 -12.05517 -11.95918 -11.32922 -11.03734 -10.74295 -10.70611 -10.34906 -10.07247 -9.88598 -9.49672 -8.90977 -8.66200 -8.04288 -6.08624 -0.08286 0.26194 0.48326 0.68781 1.34780 1.40425 1.46405 2.10907 2.43813 2.46225 2.76944 3.26006 3.47549 3.55372 3.76018 3.83787 3.85676 3.88642 4.11543 4.14252 4.31815 4.36351 4.37899 4.41130 4.44948 4.47324 4.56611 4.62712 4.67575 4.74921 4.77071 4.83331 4.85282 4.92584 5.00627 5.04185 5.06227 5.09465 5.15607 5.27750 5.31965 5.34246 5.39848 5.43146 5.70476 5.78779 5.84743 5.91711 6.14828 6.37894 6.45172 6.59380 6.91014 6.95495 7.22097 7.55681 9.04732 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003244 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.579985 B = 8629.941527 C =10280.238463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.226 3.774 3 C -0.347 4.347 4 C 0.165 3.835 5 N -0.682 5.682 6 C 0.126 3.874 7 C 0.020 3.980 8 C -0.479 4.479 9 H 0.039 0.961 10 C 0.021 3.979 11 N -0.910 5.910 12 Si 0.937 3.063 13 H -0.293 1.293 14 H -0.277 1.277 15 H -0.268 1.268 16 C -0.181 4.181 17 C -0.162 4.162 18 C 0.517 3.483 19 O -0.596 6.596 20 N -0.382 5.382 21 C 0.123 3.877 22 C -0.134 4.134 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.104 4.104 26 C -0.135 4.135 27 N -0.383 5.383 28 C 0.084 3.916 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.337 0.663 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.149 0.851 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.115 0.885 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 -30.066 -8.188 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 C -0.359 4.359 4 C 0.036 3.964 5 N -0.314 5.314 6 C -0.003 4.003 7 C 0.020 3.980 8 C -0.517 4.517 9 H 0.057 0.943 10 C -0.178 4.178 11 N -0.550 5.550 12 Si 0.764 3.236 13 H -0.220 1.220 14 H -0.202 1.202 15 H -0.192 1.192 16 C -0.218 4.218 17 C -0.201 4.201 18 C 0.319 3.681 19 O -0.478 6.478 20 N -0.194 5.194 21 C 0.033 3.967 22 C -0.154 4.154 23 C -0.115 4.115 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.156 4.156 27 N -0.177 5.177 28 C -0.054 4.054 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.157 0.843 43 H 0.184 0.816 44 H 0.181 0.819 45 H 0.167 0.833 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.133 0.867 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.785 -29.687 -8.252 31.182 hybrid contribution 0.716 1.107 0.097 1.322 sum -4.069 -28.581 -8.154 29.998 Atomic orbital electron populations 1.20943 0.81922 1.06707 1.05890 1.21362 0.95286 0.83229 0.89418 1.19943 0.91885 0.96479 1.27634 1.19691 0.98053 0.88937 0.89740 1.60076 1.59224 1.02485 1.09578 1.21151 0.94518 0.88216 0.96441 1.18875 0.89299 0.98511 0.91359 1.20544 1.00713 1.00244 1.30180 0.94321 1.25530 1.00089 0.96191 0.95973 1.70090 1.39082 1.08790 1.36991 0.85896 0.81227 0.77156 0.79359 1.22031 1.20213 1.19227 1.22972 1.01877 0.97658 0.99332 1.22417 1.03359 0.91589 1.02689 1.17461 0.91684 0.79757 0.79238 1.90825 1.42156 1.57415 1.57404 1.45716 0.96629 1.05898 1.71111 1.17850 0.86393 0.94352 0.98110 1.21340 1.01087 0.95898 0.97102 1.21473 0.91884 0.99303 0.98791 1.21681 0.99871 0.97273 0.94554 1.21351 0.96489 0.94460 0.99924 1.21172 0.95809 1.00448 0.98159 1.46799 0.92299 1.07290 1.71273 1.22566 1.01911 0.74626 1.06312 0.86833 0.88029 0.87282 0.95106 0.92282 0.84429 0.95399 0.96324 0.93613 0.88398 0.90882 0.92666 0.90620 0.84284 0.81610 0.81923 0.83322 0.88189 0.89002 0.86667 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.67 71.23 0.69 -0.30 16 2 C 0.23 5.02 6.94 41.04 0.28 5.30 16 3 C -0.35 -12.11 5.64 -19.85 -0.11 -12.22 16 4 C 0.17 6.34 5.97 85.56 0.51 6.85 16 5 N -0.68 -30.12 6.38 -517.95 -3.31 -33.42 16 6 C 0.13 6.08 5.51 86.30 0.48 6.55 16 7 C 0.02 1.05 1.54 -52.93 -0.08 0.97 16 8 C -0.48 -28.90 8.74 25.60 0.22 -28.68 16 9 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 10 C 0.02 1.27 5.39 84.65 0.46 1.73 16 11 N -0.91 -56.88 12.88 21.45 0.28 -56.60 16 12 Si 0.94 49.38 29.54 68.60 2.03 51.40 16 13 H -0.29 -15.99 7.11 99.48 0.71 -15.28 16 14 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 15 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 16 C -0.18 -7.76 9.96 30.62 0.30 -7.46 16 17 C -0.16 -7.87 9.37 30.62 0.29 -7.58 16 18 C 0.52 21.93 7.68 85.02 0.65 22.59 16 19 O -0.60 -32.27 17.32 -4.63 -0.08 -32.35 16 20 N -0.38 -12.00 3.65 -311.55 -1.14 -13.14 16 21 C 0.12 3.45 5.72 38.18 0.22 3.67 16 22 C -0.13 -2.66 8.25 22.40 0.18 -2.47 16 23 C -0.10 -1.37 10.04 22.25 0.22 -1.15 16 24 C -0.12 -1.67 10.04 22.29 0.22 -1.45 16 25 C -0.10 -2.08 10.04 22.25 0.22 -1.85 16 26 C -0.13 -3.83 9.29 22.40 0.21 -3.62 16 27 N -0.38 -7.97 4.05 -355.12 -1.44 -9.41 16 28 C 0.08 0.66 9.84 127.77 1.26 1.92 16 29 H 0.11 0.28 7.39 -2.39 -0.02 0.27 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.78 7.71 -2.38 -0.02 1.76 16 34 H 0.34 13.08 8.75 -89.70 -0.78 12.29 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.02 0.79 8.09 -2.39 -0.02 0.77 16 37 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 40 H 0.05 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.14 2.26 7.53 -2.91 -0.02 2.24 16 43 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 45 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.10 3.35 7.92 -2.91 -0.02 3.32 16 47 H 0.09 0.74 6.13 -2.39 -0.01 0.73 16 48 H 0.12 0.24 8.13 -2.39 -0.02 0.22 16 49 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -93.72 410.01 2.74 -90.99 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.16 Total: 19.75 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 6.23 Total: -17.21 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -5.60 Total: -112.57 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.08 Total: -32.35 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.03 Total: 51.40 kcal Total: -93.72 2.74 -90.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430022158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.712 kcal (2) G-P(sol) polarization free energy of solvation -93.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds