Wall clock time and date at job start Wed Apr 1 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46968 * 2 1 4 4 C 1.37949 * 119.90232 * 6.81793 * 3 2 1 5 5 C 1.38259 * 120.26547 * 180.02562 * 4 3 2 6 6 C 1.38352 * 119.88203 * 359.88986 * 5 4 3 7 7 C 1.37875 * 120.08305 * 359.96365 * 6 5 4 8 8 C 1.39012 * 120.47669 * 0.29179 * 7 6 5 9 9 N 1.40038 * 110.95054 * 179.20833 * 8 7 6 10 10 C 1.46900 * 110.99653 * 140.23016 * 9 8 7 11 11 C 1.50701 * 109.47347 * 305.42674 * 10 9 8 12 12 O 1.21275 * 119.99870 * 357.19439 * 11 10 9 13 13 N 1.34773 * 119.99976 * 177.19370 * 11 10 9 14 14 C 1.46502 * 120.00087 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47026 * 89.99918 * 14 13 11 16 16 H 1.08001 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99941 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99782 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00053 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47167 * 89.99909 * 19 17 15 21 21 H 1.48503 * 109.46799 * 210.00025 * 19 17 15 22 22 H 1.48496 * 109.46979 * 329.99275 * 19 17 15 23 23 C 1.46501 * 120.00089 * 0.02562 * 13 11 10 24 24 C 1.52998 * 109.47274 * 89.99806 * 23 13 11 25 25 C 1.47200 * 109.47445 * 179.97438 * 24 23 13 26 26 N 6.83522 * 121.54487 * 159.50857 * 2 1 3 27 27 C 1.47908 * 107.87721 * 18.42184 * 9 8 7 28 28 C 1.51570 * 131.57762 * 180.29462 * 7 6 5 29 29 H 1.09000 * 109.46868 * 184.06793 * 1 2 3 30 30 H 1.09003 * 109.47451 * 304.06726 * 1 2 3 31 31 H 1.09001 * 109.47168 * 64.06708 * 1 2 3 32 32 H 1.08994 * 109.47295 * 239.99743 * 2 1 3 33 33 H 1.08999 * 109.46927 * 119.99846 * 2 1 3 34 34 H 1.08000 * 119.87100 * 0.04194 * 4 3 2 35 35 H 1.08002 * 120.06347 * 179.91124 * 5 4 3 36 36 H 1.08002 * 119.96107 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.46927 * 65.42761 * 10 9 8 38 38 H 1.09005 * 109.47171 * 185.42541 * 10 9 8 39 39 H 1.08996 * 109.47255 * 210.00094 * 14 13 11 40 40 H 1.09004 * 109.47008 * 330.00419 * 14 13 11 41 41 H 0.96998 * 120.00009 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.47190 * 210.00094 * 23 13 11 43 43 H 1.08994 * 109.46935 * 329.99770 * 23 13 11 44 44 H 1.08998 * 109.47247 * 300.00253 * 24 23 13 45 45 H 1.09008 * 109.47131 * 59.99898 * 24 23 13 46 46 H 1.09004 * 110.77546 * 214.41393 * 27 9 8 47 47 H 1.09001 * 110.78289 * 90.98367 * 27 9 8 48 48 H 1.09001 * 110.74096 * 45.71267 * 28 7 6 49 49 H 1.09004 * 110.89320 * 282.46404 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 1.1420 2.4650 0.1420 5 6 1.5946 3.7714 0.1425 6 6 2.9460 4.0329 0.0023 7 6 3.8403 2.9928 -0.1368 8 6 3.3947 1.6760 -0.1439 9 7 4.4632 0.7868 -0.3137 10 6 4.2999 -0.4005 0.5358 11 6 4.1128 0.0286 1.9683 12 8 4.1659 1.2043 2.2610 13 7 3.8863 -0.8943 2.9240 14 6 3.7049 -0.4772 4.3167 15 6 2.2436 -0.2162 4.5766 16 1 1.5221 -0.3482 3.7839 17 6 1.8276 0.1901 5.8268 18 7 0.5523 0.4174 6.0537 19 14 3.0754 0.4177 7.1981 20 1 3.5772 1.8152 7.1838 21 1 2.4304 0.1366 8.5059 22 1 4.2104 -0.5180 6.9949 23 6 3.8227 -2.3146 2.5705 24 6 5.2209 -2.9279 2.6692 25 6 5.1568 -4.3551 2.3146 26 7 5.1060 -5.4566 2.0392 27 6 5.7112 1.5081 0.0177 28 6 5.3472 2.9768 -0.2990 29 1 -0.3633 -1.0251 0.0729 30 1 -0.3634 0.5757 0.8513 31 1 -0.3633 0.4494 -0.9242 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0873 2.2612 0.2534 35 1 0.8946 4.5865 0.2524 36 1 3.3009 5.0529 0.0030 37 1 3.4265 -0.9642 0.2083 38 1 5.1877 -1.0281 0.4576 39 1 4.0569 -1.2664 4.9811 40 1 4.2750 0.4336 4.5004 41 1 0.2595 0.7028 6.9333 42 1 3.1506 -2.8300 3.2566 43 1 3.4512 -2.4189 1.5512 44 1 5.8929 -2.4125 1.9831 45 1 5.5923 -2.8235 3.6887 46 1 6.5330 1.1688 -0.6129 47 1 5.9578 1.3897 1.0729 48 1 5.8193 3.6537 0.4131 49 1 5.6311 3.2335 -1.3197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532717400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:39 Heat of formation + Delta-G solvation = 44.586666 kcal Electronic energy + Delta-G solvation = -31335.014152 eV Core-core repulsion = 27455.868325 eV Total energy + Delta-G solvation = -3879.145827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.15057 -38.97773 -37.06205 -36.51432 -35.28988 -34.48319 -32.84601 -31.38144 -31.06626 -29.34827 -28.74186 -27.89131 -26.00339 -24.17535 -23.81468 -22.48675 -22.20259 -20.77653 -19.75008 -18.66486 -17.83014 -17.04665 -16.84282 -16.43730 -15.94387 -15.43423 -15.34624 -14.87384 -14.75018 -14.72275 -14.22711 -13.91805 -13.71525 -13.69788 -13.26074 -13.06569 -12.77439 -12.64802 -12.56146 -12.41791 -12.38785 -12.10446 -11.89161 -11.77696 -11.64660 -11.50922 -11.45516 -11.33607 -11.12002 -10.95510 -10.81177 -10.61983 -10.50612 -10.39796 -10.26773 -10.01684 -9.59605 -9.17650 -8.64694 -8.20368 -7.96102 -7.31060 -6.14137 -4.13310 1.76512 1.80217 2.62166 2.71431 3.09867 3.22783 3.27809 3.31085 3.48237 3.77451 4.04685 4.27551 4.33194 4.75170 4.78708 4.79293 4.94325 4.98855 5.08779 5.13594 5.19502 5.21170 5.32820 5.36711 5.42851 5.48098 5.51325 5.58383 5.64063 5.66629 5.77805 5.86407 5.92943 5.94317 6.06240 6.11145 6.16432 6.26631 6.32194 6.41711 6.52378 6.68798 6.78058 6.80856 6.91747 7.00526 7.11737 7.16018 7.47749 7.52661 7.54204 7.98995 8.38502 8.72841 8.90048 9.45459 10.99021 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007796 B = 0.005368 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.594261 B = 5214.382702 C = 6744.550257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.089 4.089 4 C -0.095 4.095 5 C -0.142 4.142 6 C -0.091 4.091 7 C -0.122 4.122 8 C 0.116 3.884 9 N -0.456 5.456 10 C 0.006 3.994 11 C 0.479 3.521 12 O -0.513 6.513 13 N -0.590 5.590 14 C 0.216 3.784 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.894 5.894 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.115 3.885 24 C -0.050 4.050 25 C 0.215 3.785 26 N -0.440 5.440 27 C 0.042 3.958 28 C -0.076 4.076 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.031 0.969 40 H 0.037 0.963 41 H 0.264 0.736 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.105 0.652 -12.993 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.091 4.091 4 C -0.114 4.114 5 C -0.160 4.160 6 C -0.110 4.110 7 C -0.124 4.124 8 C 0.019 3.981 9 N -0.170 5.170 10 C -0.124 4.124 11 C 0.264 3.736 12 O -0.388 6.388 13 N -0.322 5.322 14 C 0.095 3.905 15 C -0.566 4.566 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.532 5.532 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.012 4.012 24 C -0.091 4.091 25 C -0.104 4.104 26 N -0.117 5.117 27 C -0.083 4.083 28 C -0.113 4.113 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.133 0.867 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.013 -0.530 -13.611 15.803 hybrid contribution 0.467 0.748 1.871 2.068 sum 8.479 0.217 -11.740 14.483 Atomic orbital electron populations 1.21820 0.95182 1.01863 1.01914 1.20650 0.96595 0.93587 1.01573 1.19128 0.90595 0.95722 1.03694 1.20835 0.99389 0.91937 0.99220 1.20876 0.95136 0.96556 1.03469 1.20228 0.92673 0.97592 1.00471 1.20235 0.95083 0.93128 1.03986 1.19116 0.90740 0.91548 0.96723 1.60981 1.02108 1.06515 1.47413 1.22866 1.05210 0.94638 0.89707 1.21248 0.77803 0.86688 0.87819 1.90750 1.49565 1.16646 1.81864 1.47949 1.69761 1.04493 1.09959 1.19711 0.98380 0.95893 0.76490 1.21255 0.91073 1.46436 0.97846 0.90609 1.24829 0.95033 0.94607 0.98322 1.69885 1.14376 1.46161 1.22772 0.86917 0.81846 0.79280 0.81992 1.20040 1.21111 1.19086 1.21360 0.94082 0.83053 1.02675 1.19875 1.01467 0.82685 1.05113 1.29042 0.93291 0.94924 0.93096 1.81249 1.08406 1.12657 1.09404 1.23291 0.91117 0.92408 1.01525 1.21152 0.92124 0.96511 1.01541 0.92625 0.91692 0.92810 0.91208 0.90536 0.85628 0.86418 0.86885 0.86650 0.87987 0.95154 0.94491 0.92564 0.88358 0.90389 0.87572 0.86656 0.89578 0.90718 0.90484 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.64 37.16 0.32 -1.73 16 2 C -0.09 -1.28 4.40 -27.88 -0.12 -1.41 16 3 C -0.09 -1.49 5.53 -104.31 -0.58 -2.06 16 4 C -0.10 -1.57 9.01 -39.68 -0.36 -1.93 16 5 C -0.14 -2.21 10.06 -39.53 -0.40 -2.61 16 6 C -0.09 -1.41 10.03 -39.67 -0.40 -1.81 16 7 C -0.12 -1.95 5.94 -104.04 -0.62 -2.57 16 8 C 0.12 1.91 3.87 -83.40 -0.32 1.59 16 9 N -0.46 -6.44 5.29 -170.38 -0.90 -7.35 16 10 C 0.01 0.07 3.93 -4.98 -0.02 0.05 16 11 C 0.48 8.15 5.49 -10.99 -0.06 8.09 16 12 O -0.51 -10.92 12.31 5.56 0.07 -10.85 16 13 N -0.59 -9.90 2.46 -175.06 -0.43 -10.33 16 14 C 0.22 4.62 4.23 -5.19 -0.02 4.59 16 15 C -0.53 -13.95 9.94 -34.44 -0.34 -14.29 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 19 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 23 C 0.11 1.40 5.19 -4.04 -0.02 1.37 16 24 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 25 C 0.21 2.37 15.44 -20.74 -0.32 2.05 16 26 N -0.44 -6.09 18.54 42.17 0.78 -5.31 16 27 C 0.04 0.54 6.32 -2.43 -0.02 0.53 16 28 C -0.08 -0.98 7.04 -26.61 -0.19 -1.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.00 6.91 -51.93 -0.36 0.64 16 31 H 0.05 0.64 8.03 -51.93 -0.42 0.23 16 32 H 0.07 0.90 7.60 -51.93 -0.39 0.50 16 33 H 0.08 1.24 5.72 -51.93 -0.30 0.94 16 34 H 0.13 1.88 5.85 -52.49 -0.31 1.57 16 35 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.12 1.41 3.80 -51.93 -0.20 1.21 16 38 H 0.10 0.98 7.29 -51.93 -0.38 0.60 16 39 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 40 H 0.04 0.87 6.85 -51.93 -0.36 0.51 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.08 0.80 6.36 -51.93 -0.33 0.47 16 44 H 0.11 0.73 7.30 -51.93 -0.38 0.35 16 45 H 0.12 1.00 8.14 -51.92 -0.42 0.58 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.08 6.05 -51.93 -0.31 0.76 16 48 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -34.17 387.49 -9.34 -43.51 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.07 Total: 4.27 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.74 Total: -9.96 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.22 Total: -48.68 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.17 -9.34 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532717400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.096 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds