Wall clock time and date at job start Wed Apr 1 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46968 * 2 1 4 4 C 1.37949 * 119.90232 * 6.81793 * 3 2 1 5 5 C 1.38259 * 120.26547 * 180.02562 * 4 3 2 6 6 C 1.38352 * 119.88203 * 359.88986 * 5 4 3 7 7 C 1.37875 * 120.08305 * 359.96365 * 6 5 4 8 8 C 1.39012 * 120.47669 * 0.29179 * 7 6 5 9 9 N 1.40038 * 110.95054 * 179.20833 * 8 7 6 10 10 C 1.46900 * 110.99653 * 140.23016 * 9 8 7 11 11 C 1.50701 * 109.47347 * 305.42674 * 10 9 8 12 12 O 1.21275 * 119.99870 * 357.19439 * 11 10 9 13 13 N 1.34773 * 119.99976 * 177.19370 * 11 10 9 14 14 C 1.46502 * 120.00087 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47026 * 89.99918 * 14 13 11 16 16 H 1.08001 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99941 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99782 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00053 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47167 * 89.99909 * 19 17 15 21 21 H 1.48503 * 109.46799 * 210.00025 * 19 17 15 22 22 H 1.48496 * 109.46979 * 329.99275 * 19 17 15 23 23 C 1.46501 * 120.00089 * 0.02562 * 13 11 10 24 24 C 1.52998 * 109.47274 * 89.99806 * 23 13 11 25 25 C 1.47200 * 109.47445 * 179.97438 * 24 23 13 26 26 N 6.83522 * 121.54487 * 159.50857 * 2 1 3 27 27 C 1.47908 * 107.87721 * 18.42184 * 9 8 7 28 28 C 1.51570 * 131.57762 * 180.29462 * 7 6 5 29 29 H 1.09000 * 109.46868 * 184.06793 * 1 2 3 30 30 H 1.09003 * 109.47451 * 304.06726 * 1 2 3 31 31 H 1.09001 * 109.47168 * 64.06708 * 1 2 3 32 32 H 1.08994 * 109.47295 * 239.99743 * 2 1 3 33 33 H 1.08999 * 109.46927 * 119.99846 * 2 1 3 34 34 H 1.08000 * 119.87100 * 0.04194 * 4 3 2 35 35 H 1.08002 * 120.06347 * 179.91124 * 5 4 3 36 36 H 1.08002 * 119.96107 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.46927 * 65.42761 * 10 9 8 38 38 H 1.09005 * 109.47171 * 185.42541 * 10 9 8 39 39 H 1.08996 * 109.47255 * 210.00094 * 14 13 11 40 40 H 1.09004 * 109.47008 * 330.00419 * 14 13 11 41 41 H 0.96998 * 120.00009 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.47190 * 210.00094 * 23 13 11 43 43 H 1.08994 * 109.46935 * 329.99770 * 23 13 11 44 44 H 1.08998 * 109.47247 * 300.00253 * 24 23 13 45 45 H 1.09008 * 109.47131 * 59.99898 * 24 23 13 46 46 H 1.09004 * 110.77546 * 214.41393 * 27 9 8 47 47 H 1.09001 * 110.78289 * 90.98367 * 27 9 8 48 48 H 1.09001 * 110.74096 * 45.71267 * 28 7 6 49 49 H 1.09004 * 110.89320 * 282.46404 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 1.1420 2.4650 0.1420 5 6 1.5946 3.7714 0.1425 6 6 2.9460 4.0329 0.0023 7 6 3.8403 2.9928 -0.1368 8 6 3.3947 1.6760 -0.1439 9 7 4.4632 0.7868 -0.3137 10 6 4.2999 -0.4005 0.5358 11 6 4.1128 0.0286 1.9683 12 8 4.1659 1.2043 2.2610 13 7 3.8863 -0.8943 2.9240 14 6 3.7049 -0.4772 4.3167 15 6 2.2436 -0.2162 4.5766 16 1 1.5221 -0.3482 3.7839 17 6 1.8276 0.1901 5.8268 18 7 0.5523 0.4174 6.0537 19 14 3.0754 0.4177 7.1981 20 1 3.5772 1.8152 7.1838 21 1 2.4304 0.1366 8.5059 22 1 4.2104 -0.5180 6.9949 23 6 3.8227 -2.3146 2.5705 24 6 5.2209 -2.9279 2.6692 25 6 5.1568 -4.3551 2.3146 26 7 5.1060 -5.4566 2.0392 27 6 5.7112 1.5081 0.0177 28 6 5.3472 2.9768 -0.2990 29 1 -0.3633 -1.0251 0.0729 30 1 -0.3634 0.5757 0.8513 31 1 -0.3633 0.4494 -0.9242 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0873 2.2612 0.2534 35 1 0.8946 4.5865 0.2524 36 1 3.3009 5.0529 0.0030 37 1 3.4265 -0.9642 0.2083 38 1 5.1877 -1.0281 0.4576 39 1 4.0569 -1.2664 4.9811 40 1 4.2750 0.4336 4.5004 41 1 0.2595 0.7028 6.9333 42 1 3.1506 -2.8300 3.2566 43 1 3.4512 -2.4189 1.5512 44 1 5.8929 -2.4125 1.9831 45 1 5.5923 -2.8235 3.6887 46 1 6.5330 1.1688 -0.6129 47 1 5.9578 1.3897 1.0729 48 1 5.8193 3.6537 0.4131 49 1 5.6311 3.2335 -1.3197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532717400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:37 Heat of formation + Delta-G solvation = 23.291927 kcal Electronic energy + Delta-G solvation = -31335.937561 eV Core-core repulsion = 27455.868325 eV Total energy + Delta-G solvation = -3880.069236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.30373 -40.24651 -38.11481 -37.60588 -36.57544 -35.65227 -34.77267 -32.58515 -32.23133 -30.56122 -30.06255 -29.25474 -27.25530 -25.26218 -25.05149 -24.04133 -23.33415 -22.00350 -20.90417 -19.94192 -19.16791 -18.53380 -18.15812 -17.64766 -17.05965 -16.76939 -16.45550 -16.18846 -16.05075 -15.75577 -15.61227 -15.22788 -14.87003 -14.76704 -14.60475 -14.32854 -14.18008 -13.86497 -13.78857 -13.59103 -13.51374 -13.27569 -13.19138 -13.00898 -12.90002 -12.72873 -12.57008 -12.52296 -12.41525 -12.35210 -11.99561 -11.98372 -11.87330 -11.68298 -11.62271 -11.53028 -11.20474 -10.76695 -10.47573 -9.44462 -9.37996 -8.48348 -8.26786 -6.30019 0.56190 0.58851 1.35185 1.39127 1.45894 1.68682 1.84274 1.86867 2.28844 2.34916 2.65611 3.04475 3.09976 3.19836 3.68725 3.75545 3.76705 3.97652 4.04258 4.05157 4.08896 4.17482 4.31490 4.35582 4.38330 4.43297 4.51253 4.54081 4.60996 4.76457 4.77711 4.81012 4.85716 4.88121 4.98233 4.99328 5.04138 5.08943 5.13302 5.14746 5.21591 5.25936 5.53263 5.54659 5.62142 5.64084 5.73101 5.82056 6.01318 6.30396 6.37410 6.62759 6.69124 6.73674 7.29016 7.45013 8.89877 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007796 B = 0.005368 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.594261 B = 5214.382702 C = 6744.550257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.112 4.112 4 C -0.120 4.120 5 C -0.156 4.156 6 C -0.105 4.105 7 C -0.142 4.142 8 C 0.102 3.898 9 N -0.451 5.451 10 C 0.012 3.988 11 C 0.477 3.523 12 O -0.562 6.562 13 N -0.591 5.591 14 C 0.225 3.775 15 C -0.523 4.523 16 H 0.030 0.970 17 C 0.010 3.990 18 N -0.947 5.947 19 Si 0.938 3.062 20 H -0.283 1.283 21 H -0.285 1.285 22 H -0.227 1.227 23 C 0.108 3.892 24 C -0.036 4.036 25 C 0.244 3.756 26 N -0.490 5.490 27 C 0.043 3.957 28 C -0.075 4.075 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.264 0.736 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.336 -0.410 -14.071 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.114 4.114 4 C -0.138 4.138 5 C -0.175 4.175 6 C -0.124 4.124 7 C -0.145 4.145 8 C 0.005 3.995 9 N -0.165 5.165 10 C -0.117 4.117 11 C 0.265 3.735 12 O -0.440 6.440 13 N -0.322 5.322 14 C 0.103 3.897 15 C -0.562 4.562 16 H 0.049 0.951 17 C -0.187 4.187 18 N -0.588 5.588 19 Si 0.762 3.238 20 H -0.209 1.209 21 H -0.211 1.211 22 H -0.150 1.150 23 C -0.016 4.016 24 C -0.077 4.077 25 C -0.073 4.073 26 N -0.168 5.168 27 C -0.082 4.082 28 C -0.112 4.112 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.159 0.841 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.270 -1.648 -14.724 18.615 hybrid contribution -0.636 1.138 2.135 2.501 sum 10.634 -0.510 -12.589 16.487 Atomic orbital electron populations 1.21779 0.94879 1.02212 1.01515 1.20638 0.96915 0.92736 1.01617 1.19443 0.91276 0.96548 1.04143 1.21084 0.99875 0.92712 1.00152 1.21190 0.95979 0.96873 1.03440 1.20573 0.92691 0.98821 1.00288 1.20770 0.97014 0.93234 1.03462 1.19373 0.91162 0.92489 0.96498 1.61057 1.01839 1.06504 1.47075 1.23009 1.07703 0.94777 0.86261 1.21997 0.76388 0.85912 0.89227 1.90732 1.51653 1.18778 1.82823 1.47877 1.69565 1.06548 1.08251 1.19346 0.94371 0.96096 0.79907 1.21565 0.93216 1.45040 0.96396 0.95147 1.25782 0.96920 0.94594 1.01428 1.70062 1.16911 1.48396 1.23454 0.85859 0.80259 0.79415 0.78267 1.20916 1.21059 1.14985 1.21555 0.96156 0.80352 1.03556 1.19850 0.99744 0.81233 1.06899 1.29195 0.91760 0.94819 0.91547 1.81297 1.09939 1.14260 1.11298 1.23419 0.91369 0.92119 1.01323 1.21255 0.89936 0.97072 1.02916 0.91462 0.94487 0.91153 0.88881 0.92340 0.85415 0.84776 0.84886 0.85816 0.83461 0.92566 0.96131 0.92753 0.89820 0.88177 0.84127 0.85421 0.85849 0.92425 0.90388 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.64 71.98 0.62 -3.46 16 2 C -0.08 -2.41 4.40 29.85 0.13 -2.28 16 3 C -0.11 -3.77 5.53 -19.66 -0.11 -3.88 16 4 C -0.12 -4.11 9.01 22.21 0.20 -3.91 16 5 C -0.16 -5.02 10.06 22.30 0.22 -4.80 16 6 C -0.11 -3.28 10.03 22.21 0.22 -3.05 16 7 C -0.14 -4.47 5.94 -19.49 -0.12 -4.58 16 8 C 0.10 3.28 3.87 38.28 0.15 3.43 16 9 N -0.45 -11.53 5.29 -692.95 -3.67 -15.20 16 10 C 0.01 0.27 3.93 85.56 0.34 0.61 16 11 C 0.48 15.52 5.49 87.66 0.48 16.00 16 12 O -0.56 -23.81 12.31 -3.01 -0.04 -23.85 16 13 N -0.59 -18.87 2.46 -826.17 -2.03 -20.89 16 14 C 0.23 9.40 4.23 85.63 0.36 9.77 16 15 C -0.52 -28.39 9.94 25.60 0.25 -28.13 16 16 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 17 C 0.01 0.58 5.47 84.65 0.46 1.04 16 18 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 19 Si 0.94 42.31 27.47 68.60 1.88 44.20 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 23 C 0.11 2.35 5.19 86.38 0.45 2.80 16 24 C -0.04 -0.50 6.03 28.79 0.17 -0.33 16 25 C 0.24 4.58 15.44 89.44 1.38 5.96 16 26 N -0.49 -12.50 18.54 20.01 0.37 -12.13 16 27 C 0.04 0.96 6.32 86.65 0.55 1.51 16 28 C -0.07 -1.78 7.04 30.67 0.22 -1.56 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.21 6.91 -2.39 -0.02 1.19 16 31 H 0.07 1.68 8.03 -2.39 -0.02 1.67 16 32 H 0.09 2.23 7.60 -2.39 -0.02 2.21 16 33 H 0.06 1.91 5.72 -2.39 -0.01 1.89 16 34 H 0.13 4.11 5.85 -2.91 -0.02 4.09 16 35 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.12 2.65 3.80 -2.39 -0.01 2.64 16 38 H 0.15 1.99 7.29 -2.38 -0.02 1.98 16 39 H 0.06 2.08 7.13 -2.39 -0.02 2.06 16 40 H 0.02 0.94 6.85 -2.38 -0.02 0.93 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 43 H 0.10 1.73 6.36 -2.39 -0.02 1.72 16 44 H 0.14 1.09 7.30 -2.39 -0.02 1.07 16 45 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.06 1.52 6.05 -2.39 -0.01 1.50 16 48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -79.98 387.49 3.72 -76.26 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.92 Total: 24.70 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 5.99 Total: -14.88 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -5.03 Total: -106.43 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.20 kcal Total: -79.98 3.72 -76.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532717400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.553 kcal (2) G-P(sol) polarization free energy of solvation -79.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds